Wall clock time and date at job start Tue Mar 31 2020 20:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 120.00050 * 2 1 4 4 H 1.48500 * 109.47182 * 274.98821 * 3 2 1 5 5 H 1.48501 * 109.47124 * 34.98130 * 3 2 1 6 6 H 1.48495 * 109.47263 * 154.98360 * 3 2 1 7 7 C 1.38636 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99608 * 4.99692 * 7 2 1 9 9 O 1.34798 * 119.99751 * 185.00215 * 7 2 1 10 10 C 1.35788 * 116.99639 * 185.46700 * 9 7 2 11 11 C 1.38735 * 120.08654 * 5.88844 * 10 9 7 12 12 C 1.38345 * 119.97768 * 179.97438 * 11 10 9 13 13 F 1.35096 * 119.92596 * 179.97438 * 12 11 10 14 14 C 1.38550 * 120.14887 * 0.02562 * 12 11 10 15 15 C 1.38194 * 120.17210 * 359.74861 * 14 12 11 16 16 C 1.38689 * 120.02484 * 0.50224 * 15 14 12 17 17 N 1.40136 * 120.07562 * 179.77133 * 16 15 14 18 18 C 1.34779 * 120.00248 * 325.52226 * 17 16 15 19 19 O 1.21591 * 119.99549 * 4.58103 * 18 17 16 20 20 N 1.34774 * 119.99992 * 184.58141 * 18 17 16 21 21 C 1.46496 * 120.00150 * 4.28561 * 20 18 17 22 22 C 1.52997 * 109.46999 * 269.99771 * 21 20 18 23 23 O 1.42900 * 109.47201 * 65.00194 * 22 21 20 24 24 C 1.46504 * 119.99651 * 184.28504 * 20 18 17 25 25 C 1.53775 * 113.61527 * 53.09480 * 24 20 18 26 26 C 1.53775 * 87.17469 * 220.05926 * 25 24 20 27 27 C 1.53784 * 87.08102 * 25.39239 * 26 25 24 28 28 H 0.97008 * 119.99735 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.01256 * 359.95957 * 11 10 9 30 30 H 1.07996 * 119.90746 * 180.02562 * 14 12 11 31 31 H 1.08007 * 119.98687 * 180.25276 * 15 14 12 32 32 H 0.97003 * 120.00076 * 145.52293 * 17 16 15 33 33 H 1.09000 * 109.47079 * 30.00223 * 21 20 18 34 34 H 1.08997 * 109.47066 * 149.99876 * 21 20 18 35 35 H 1.09002 * 109.47037 * 185.00032 * 22 21 20 36 36 H 1.09000 * 109.47398 * 305.00000 * 22 21 20 37 37 H 0.96696 * 114.00481 * 179.97438 * 23 22 21 38 38 H 1.08998 * 112.90765 * 184.34643 * 24 20 18 39 39 H 1.08999 * 113.61706 * 105.46777 * 25 24 20 40 40 H 1.09000 * 113.61682 * 334.65063 * 25 24 20 41 41 H 1.09009 * 113.61370 * 139.93868 * 26 25 24 42 42 H 1.08999 * 113.62070 * 270.84132 * 26 25 24 43 43 H 1.09001 * 113.60861 * 89.11447 * 27 26 25 44 44 H 1.08997 * 113.61388 * 219.93291 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.3918 2.1073 -1.3948 5 1 1.5038 2.6200 0.8027 6 1 3.5960 1.4121 0.5920 7 6 2.0089 -1.2006 -0.0005 8 1 1.4720 -2.1340 -0.0824 9 8 3.3531 -1.2028 0.1013 10 6 3.9785 -2.4019 -0.0201 11 6 3.2519 -3.5341 -0.3594 12 6 3.8915 -4.7546 -0.4829 13 9 3.1829 -5.8565 -0.8128 14 6 5.2569 -4.8496 -0.2680 15 6 5.9874 -3.7250 0.0657 16 6 5.3527 -2.4988 0.1966 17 7 6.0917 -1.3586 0.5396 18 6 7.1431 -1.4635 1.3763 19 8 7.5018 -2.5574 1.7677 20 7 7.7967 -0.3558 1.7792 21 6 7.3083 0.9675 1.3840 22 6 7.9574 1.3763 0.0602 23 8 7.5274 0.4899 -0.9749 24 6 8.9958 -0.4753 2.6125 25 6 10.0657 -1.4088 2.0222 26 6 10.2992 -1.9213 3.4531 27 6 8.8535 -1.4944 3.7577 28 1 -0.4850 0.8401 0.0004 29 1 2.1873 -3.4627 -0.5268 30 1 5.7522 -5.8043 -0.3658 31 1 7.0524 -3.8018 0.2286 32 1 5.8465 -0.4939 0.1749 33 1 6.2256 0.9338 1.2627 34 1 7.5651 1.6946 2.1543 35 1 7.6633 2.3958 -0.1891 36 1 9.0419 1.3241 0.1560 37 1 7.9002 0.6902 -1.8443 38 1 9.3875 0.4900 2.9333 39 1 10.9220 -0.8811 1.6022 40 1 9.6622 -2.1644 1.3481 41 1 10.4578 -2.9983 3.5107 42 1 11.0478 -1.3522 4.0041 43 1 8.1172 -2.2731 3.5584 44 1 8.7309 -1.0372 4.7394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784450458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:24 Heat of formation + Delta-G solvation = -81.077852 kcal Electronic energy + Delta-G solvation = -30728.951722 eV Core-core repulsion = 26370.491743 eV Total energy + Delta-G solvation = -4358.459979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.20571 -40.84956 -39.30606 -37.73901 -37.23741 -36.26521 -34.61207 -33.65796 -32.45333 -29.54759 -29.21621 -28.30362 -25.55306 -25.42180 -24.92929 -23.23354 -22.21071 -21.51943 -20.24455 -19.41767 -18.27023 -17.94080 -17.67808 -17.34091 -16.75933 -15.92880 -15.56995 -15.42788 -15.23911 -15.11707 -14.91588 -14.46729 -14.08782 -14.03804 -13.71054 -13.55384 -13.40498 -13.22296 -13.02366 -12.83362 -12.53722 -12.34359 -12.28141 -12.03243 -11.72415 -11.58897 -11.33048 -11.18066 -10.88210 -10.70788 -10.49414 -10.46737 -10.41313 -10.16768 -9.69422 -9.60154 -9.16843 -8.95707 -8.55645 -7.87015 -7.09449 -6.50437 -4.16278 1.86078 2.11366 2.77893 3.11138 3.14813 3.24878 3.43064 4.03646 4.11627 4.13629 4.34467 4.62298 4.64769 4.69040 4.82409 4.88717 4.90229 4.97621 5.05435 5.07335 5.16636 5.26871 5.37240 5.59680 5.62162 5.68491 5.76789 5.87415 5.93254 6.03945 6.10866 6.15247 6.25814 6.32708 6.58382 6.76628 6.86494 6.91620 6.95650 7.16786 7.20560 7.48037 7.53780 7.72701 7.92881 8.26002 8.83249 8.90564 9.41364 10.57065 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009569 B = 0.005018 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.268548 B = 5578.704963 C = 7637.488129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.108 0.892 9 O -0.209 6.209 10 C 0.161 3.839 11 C -0.245 4.245 12 C 0.124 3.876 13 F -0.150 7.150 14 C -0.220 4.220 15 C -0.053 4.053 16 C 0.086 3.914 17 N -0.656 5.656 18 C 0.716 3.284 19 O -0.580 6.580 20 N -0.616 5.616 21 C 0.101 3.899 22 C 0.055 3.945 23 O -0.564 6.564 24 C 0.139 3.861 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.158 4.158 28 H 0.280 0.720 29 H 0.148 0.852 30 H 0.123 0.877 31 H 0.144 0.856 32 H 0.412 0.588 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.381 0.619 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.097 0.903 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.011 4.137 1.934 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.463 4.463 8 H 0.125 0.875 9 O -0.114 6.114 10 C 0.107 3.893 11 C -0.266 4.266 12 C 0.104 3.896 13 F -0.129 7.129 14 C -0.240 4.240 15 C -0.074 4.074 16 C -0.009 4.009 17 N -0.304 5.304 18 C 0.419 3.581 19 O -0.459 6.459 20 N -0.351 5.351 21 C -0.023 4.023 22 C -0.024 4.024 23 O -0.370 6.370 24 C 0.035 3.965 25 C -0.184 4.184 26 C -0.174 4.174 27 C -0.196 4.196 28 H 0.091 0.909 29 H 0.165 0.835 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.251 0.749 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.228 0.772 38 H 0.122 0.878 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.138 0.862 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 18.770 3.496 2.768 19.293 hybrid contribution 0.087 1.423 -0.775 1.622 sum 18.857 4.918 1.993 19.590 Atomic orbital electron populations 1.69659 1.05566 1.28534 1.47347 1.24467 0.95026 0.98735 0.95679 0.86177 0.80409 0.81706 0.78629 1.19915 1.20677 1.18423 1.20755 0.76756 0.96826 1.51989 0.87506 1.83577 1.22933 1.25369 1.79525 1.18571 0.89208 0.86200 0.95343 1.20954 1.02286 0.90992 1.12392 1.17456 0.89574 0.82269 1.00335 1.91416 1.79021 1.52242 1.90245 1.20546 0.92092 0.99580 1.11796 1.20683 1.00316 0.89814 0.96591 1.16700 0.87060 0.87684 1.09501 1.42408 1.30194 1.10770 1.47064 1.15676 0.79806 0.83812 0.78798 1.90760 1.68691 1.25232 1.61244 1.46939 1.29361 1.04466 1.54332 1.21730 1.00312 0.85429 0.94877 1.22707 0.98162 0.92838 0.88710 1.86505 1.73485 1.56635 1.20356 1.22526 0.84149 0.98248 0.91567 1.23343 0.97648 0.99844 0.97605 1.22575 0.96846 1.01304 0.96694 1.23680 0.98637 1.00553 0.96773 0.90946 0.83489 0.85921 0.83815 0.74886 0.89528 0.88607 0.92718 0.93285 0.77184 0.87751 0.92351 0.88471 0.91164 0.90932 0.86180 0.92430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.54 13.96 55.48 0.77 -23.76 16 2 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.27 28.62 -169.99 -4.87 15.40 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.55 9.89 30.88 0.31 -10.24 16 8 H 0.11 3.03 5.53 -52.49 -0.29 2.73 16 9 O -0.21 -5.23 8.15 0.02 0.00 -5.23 16 10 C 0.16 3.69 6.66 -38.94 -0.26 3.43 16 11 C -0.25 -5.49 9.11 -39.36 -0.36 -5.84 16 12 C 0.12 2.51 7.29 -39.43 -0.29 2.23 16 13 F -0.15 -2.97 17.26 2.25 0.04 -2.93 16 14 C -0.22 -4.09 10.02 -39.48 -0.40 -4.49 16 15 C -0.05 -1.02 8.70 -39.43 -0.34 -1.36 16 16 C 0.09 1.77 6.33 -83.44 -0.53 1.24 16 17 N -0.66 -12.15 4.48 -14.07 -0.06 -12.21 16 18 C 0.72 12.24 7.21 -86.92 -0.63 11.61 16 19 O -0.58 -10.80 9.45 5.29 0.05 -10.75 16 20 N -0.62 -8.15 2.71 -170.77 -0.46 -8.62 16 21 C 0.10 1.10 5.72 -4.05 -0.02 1.08 16 22 C 0.06 0.50 7.39 37.16 0.27 0.78 16 23 O -0.56 -6.36 11.32 -35.23 -0.40 -6.76 16 24 C 0.14 1.55 4.42 -67.03 -0.30 1.25 16 25 C -0.15 -1.63 7.43 -25.92 -0.19 -1.82 16 26 C -0.14 -1.41 8.08 -25.92 -0.21 -1.62 16 27 C -0.16 -1.93 7.38 -25.83 -0.19 -2.12 16 28 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.15 3.43 5.72 -52.48 -0.30 3.13 16 30 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.14 2.66 6.17 -52.48 -0.32 2.34 16 32 H 0.41 7.52 5.10 -40.82 -0.21 7.32 16 33 H 0.09 1.16 6.63 -51.93 -0.34 0.82 16 34 H 0.10 0.76 7.98 -51.93 -0.41 0.35 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.38 2.70 9.12 45.56 0.42 3.12 16 38 H 0.10 0.87 7.98 -51.93 -0.41 0.45 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 1.37 6.47 -51.93 -0.34 1.04 16 41 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.12 1.90 5.44 -51.93 -0.28 1.62 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -30.71 359.77 -7.32 -38.03 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -4.59 Total: 15.62 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.23 Total: -4.23 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.25 Total: -44.59 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.35 Total: -22.73 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.87 Total: 15.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.71 -7.32 -38.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784450458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.044 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds