Wall clock time and date at job start Tue Mar 31 2020 20:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86801 * 120.00050 * 2 1 4 4 H 1.48500 * 109.47182 * 274.98821 * 3 2 1 5 5 H 1.48501 * 109.47124 * 34.98130 * 3 2 1 6 6 H 1.48495 * 109.47263 * 154.98360 * 3 2 1 7 7 C 1.38636 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99608 * 4.99692 * 7 2 1 9 9 O 1.34798 * 119.99751 * 185.00215 * 7 2 1 10 10 C 1.35788 * 116.99639 * 185.46700 * 9 7 2 11 11 C 1.38735 * 120.08654 * 5.88844 * 10 9 7 12 12 C 1.38345 * 119.97768 * 179.97438 * 11 10 9 13 13 F 1.35096 * 119.92596 * 179.97438 * 12 11 10 14 14 C 1.38550 * 120.14887 * 0.02562 * 12 11 10 15 15 C 1.38194 * 120.17210 * 359.74861 * 14 12 11 16 16 C 1.38689 * 120.02484 * 0.50224 * 15 14 12 17 17 N 1.40136 * 120.07562 * 179.77133 * 16 15 14 18 18 C 1.34779 * 120.00248 * 325.52226 * 17 16 15 19 19 O 1.21591 * 119.99549 * 4.58103 * 18 17 16 20 20 N 1.34774 * 119.99992 * 184.58141 * 18 17 16 21 21 C 1.46496 * 120.00150 * 4.28561 * 20 18 17 22 22 C 1.52997 * 109.46999 * 269.99771 * 21 20 18 23 23 O 1.42900 * 109.47201 * 65.00194 * 22 21 20 24 24 C 1.46504 * 119.99651 * 184.28504 * 20 18 17 25 25 C 1.53775 * 113.61527 * 53.09480 * 24 20 18 26 26 C 1.53775 * 87.17469 * 220.05926 * 25 24 20 27 27 C 1.53784 * 87.08102 * 25.39239 * 26 25 24 28 28 H 0.97008 * 119.99735 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.01256 * 359.95957 * 11 10 9 30 30 H 1.07996 * 119.90746 * 180.02562 * 14 12 11 31 31 H 1.08007 * 119.98687 * 180.25276 * 15 14 12 32 32 H 0.97003 * 120.00076 * 145.52293 * 17 16 15 33 33 H 1.09000 * 109.47079 * 30.00223 * 21 20 18 34 34 H 1.08997 * 109.47066 * 149.99876 * 21 20 18 35 35 H 1.09002 * 109.47037 * 185.00032 * 22 21 20 36 36 H 1.09000 * 109.47398 * 305.00000 * 22 21 20 37 37 H 0.96696 * 114.00481 * 179.97438 * 23 22 21 38 38 H 1.08998 * 112.90765 * 184.34643 * 24 20 18 39 39 H 1.08999 * 113.61706 * 105.46777 * 25 24 20 40 40 H 1.09000 * 113.61682 * 334.65063 * 25 24 20 41 41 H 1.09009 * 113.61370 * 139.93868 * 26 25 24 42 42 H 1.08999 * 113.62070 * 270.84132 * 26 25 24 43 43 H 1.09001 * 113.60861 * 89.11447 * 27 26 25 44 44 H 1.08997 * 113.61388 * 219.93291 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.3918 2.1073 -1.3948 5 1 1.5038 2.6200 0.8027 6 1 3.5960 1.4121 0.5920 7 6 2.0089 -1.2006 -0.0005 8 1 1.4720 -2.1340 -0.0824 9 8 3.3531 -1.2028 0.1013 10 6 3.9785 -2.4019 -0.0201 11 6 3.2519 -3.5341 -0.3594 12 6 3.8915 -4.7546 -0.4829 13 9 3.1829 -5.8565 -0.8128 14 6 5.2569 -4.8496 -0.2680 15 6 5.9874 -3.7250 0.0657 16 6 5.3527 -2.4988 0.1966 17 7 6.0917 -1.3586 0.5396 18 6 7.1431 -1.4635 1.3763 19 8 7.5018 -2.5574 1.7677 20 7 7.7967 -0.3558 1.7792 21 6 7.3083 0.9675 1.3840 22 6 7.9574 1.3763 0.0602 23 8 7.5274 0.4899 -0.9749 24 6 8.9958 -0.4753 2.6125 25 6 10.0657 -1.4088 2.0222 26 6 10.2992 -1.9213 3.4531 27 6 8.8535 -1.4944 3.7577 28 1 -0.4850 0.8401 0.0004 29 1 2.1873 -3.4627 -0.5268 30 1 5.7522 -5.8043 -0.3658 31 1 7.0524 -3.8018 0.2286 32 1 5.8465 -0.4939 0.1749 33 1 6.2256 0.9338 1.2627 34 1 7.5651 1.6946 2.1543 35 1 7.6633 2.3958 -0.1891 36 1 9.0419 1.3241 0.1560 37 1 7.9002 0.6902 -1.8443 38 1 9.3875 0.4900 2.9333 39 1 10.9220 -0.8811 1.6022 40 1 9.6622 -2.1644 1.3481 41 1 10.4578 -2.9983 3.5107 42 1 11.0478 -1.3522 4.0041 43 1 8.1172 -2.2731 3.5584 44 1 8.7309 -1.0372 4.7394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784450458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:23 Heat of formation + Delta-G solvation = -101.432837 kcal Electronic energy + Delta-G solvation = -30729.834381 eV Core-core repulsion = 26370.491743 eV Total energy + Delta-G solvation = -4359.342638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.84457 -42.09611 -40.88566 -39.02892 -38.09541 -37.81605 -35.72193 -35.00094 -34.45893 -31.22464 -30.26728 -29.73708 -27.33910 -26.44372 -25.97996 -24.23646 -23.73383 -23.09981 -21.30750 -20.67415 -20.10962 -19.57428 -18.67449 -18.50495 -18.01088 -17.35098 -17.01829 -16.79943 -16.63485 -16.50026 -16.07734 -15.87436 -15.61458 -15.48611 -15.25020 -15.03764 -14.86900 -14.42934 -14.24028 -13.95437 -13.84565 -13.70037 -13.57787 -13.31909 -13.10113 -12.88712 -12.54350 -12.46284 -12.37544 -12.13062 -12.03389 -11.65820 -11.35695 -11.33057 -11.08392 -10.92886 -10.85384 -10.48878 -9.65217 -9.53552 -8.72222 -8.51930 -6.25187 0.19601 0.41921 1.31028 1.37100 1.51934 1.63169 2.10144 2.26838 2.64296 2.80604 2.91308 3.00023 3.38570 3.41389 3.77094 3.82493 3.93068 4.00439 4.08099 4.11717 4.15721 4.27003 4.32316 4.45930 4.57356 4.60431 4.67952 4.85217 4.86449 4.93439 5.01647 5.09559 5.15118 5.18459 5.21588 5.26987 5.32872 5.42519 5.52909 5.66560 5.83922 5.92090 5.95519 6.12547 6.80040 6.88329 7.00398 7.42871 7.60365 8.59273 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009569 B = 0.005018 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.268548 B = 5578.704963 C = 7637.488129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.249 1.249 7 C -0.401 4.401 8 H 0.077 0.923 9 O -0.221 6.221 10 C 0.134 3.866 11 C -0.255 4.255 12 C 0.114 3.886 13 F -0.146 7.146 14 C -0.191 4.191 15 C -0.052 4.052 16 C 0.095 3.905 17 N -0.660 5.660 18 C 0.709 3.291 19 O -0.600 6.600 20 N -0.608 5.608 21 C 0.091 3.909 22 C 0.058 3.942 23 O -0.595 6.595 24 C 0.139 3.861 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.168 4.168 28 H 0.286 0.714 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.413 0.587 33 H 0.058 0.942 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.396 0.604 38 H 0.146 0.854 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.849 5.842 2.486 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.477 4.477 8 H 0.094 0.906 9 O -0.128 6.128 10 C 0.081 3.919 11 C -0.276 4.276 12 C 0.094 3.906 13 F -0.125 7.125 14 C -0.211 4.211 15 C -0.073 4.073 16 C -0.001 4.001 17 N -0.309 5.309 18 C 0.412 3.588 19 O -0.481 6.481 20 N -0.342 5.342 21 C -0.032 4.032 22 C -0.021 4.021 23 O -0.404 6.404 24 C 0.036 3.964 25 C -0.183 4.183 26 C -0.163 4.163 27 C -0.206 4.206 28 H 0.096 0.904 29 H 0.144 0.856 30 H 0.177 0.823 31 H 0.174 0.826 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.151 0.849 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.246 0.754 38 H 0.164 0.836 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.662 5.200 3.320 23.487 hybrid contribution -0.958 0.675 -0.917 1.488 sum 21.703 5.876 2.403 22.613 Atomic orbital electron populations 1.69755 1.07197 1.29803 1.49164 1.25349 0.95878 1.02405 0.95068 0.85189 0.79432 0.76848 0.79238 1.18890 1.19526 1.17247 1.20638 0.77944 0.96235 1.52910 0.90580 1.83525 1.21458 1.26211 1.81571 1.18891 0.90278 0.85851 0.96832 1.20951 1.01523 0.92223 1.12936 1.17471 0.90316 0.81682 1.01126 1.91423 1.79118 1.51734 1.90248 1.20930 0.91035 1.00896 1.08259 1.20889 1.00845 0.89372 0.96195 1.16894 0.86349 0.89084 1.07755 1.42464 1.30553 1.10109 1.47726 1.15897 0.79560 0.84762 0.78605 1.90753 1.69124 1.26473 1.61721 1.47045 1.29314 1.04276 1.53587 1.22049 0.98908 0.84869 0.97411 1.22763 0.98898 0.93353 0.87098 1.86458 1.74298 1.57785 1.21819 1.22885 0.83111 0.99924 0.90467 1.23228 0.98327 0.99255 0.97466 1.22582 0.96280 1.01091 0.96364 1.23582 0.98889 1.00191 0.97985 0.90447 0.85622 0.82314 0.82619 0.74746 0.92314 0.84911 0.90508 0.91486 0.75407 0.83602 0.89974 0.91915 0.92355 0.87904 0.90254 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.76 13.96 21.61 0.30 -53.46 16 2 C 0.01 0.67 5.49 84.83 0.47 1.14 16 3 Si 0.97 42.17 28.62 68.60 1.96 44.14 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.40 -23.03 9.89 67.91 0.67 -22.36 16 8 H 0.08 4.69 5.53 -2.91 -0.02 4.67 16 9 O -0.22 -11.47 8.15 -22.84 -0.19 -11.65 16 10 C 0.13 6.33 6.66 22.68 0.15 6.49 16 11 C -0.26 -11.94 9.11 22.41 0.20 -11.73 16 12 C 0.11 4.64 7.29 22.37 0.16 4.80 16 13 F -0.15 -5.75 17.26 44.97 0.78 -4.97 16 14 C -0.19 -6.80 10.02 22.33 0.22 -6.58 16 15 C -0.05 -1.95 8.70 22.37 0.19 -1.76 16 16 C 0.10 3.95 6.33 38.22 0.24 4.19 16 17 N -0.66 -24.26 4.48 -316.70 -1.42 -25.68 16 18 C 0.71 23.66 7.21 179.05 1.29 24.95 16 19 O -0.60 -22.16 9.45 -4.00 -0.04 -22.20 16 20 N -0.61 -14.74 2.71 -812.47 -2.20 -16.94 16 21 C 0.09 1.72 5.72 86.38 0.49 2.21 16 22 C 0.06 0.85 7.39 71.98 0.53 1.38 16 23 O -0.59 -12.24 11.32 -148.98 -1.69 -13.92 16 24 C 0.14 2.62 4.42 45.57 0.20 2.82 16 25 C -0.14 -2.82 7.43 31.12 0.23 -2.59 16 26 C -0.13 -2.25 8.08 31.12 0.25 -2.00 16 27 C -0.17 -3.77 7.38 31.18 0.23 -3.54 16 28 H 0.29 15.26 8.31 -92.70 -0.77 14.49 16 29 H 0.13 6.37 5.72 -2.91 -0.02 6.36 16 30 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 31 H 0.16 5.55 6.17 -2.91 -0.02 5.53 16 32 H 0.41 14.98 5.10 -92.71 -0.47 14.50 16 33 H 0.06 1.48 6.63 -2.39 -0.02 1.46 16 34 H 0.13 1.50 7.98 -2.39 -0.02 1.48 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.40 4.85 9.12 -74.06 -0.68 4.18 16 38 H 0.15 1.60 7.98 -2.39 -0.02 1.58 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.70 6.47 -2.39 -0.02 1.68 16 41 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 2.50 5.44 -2.39 -0.01 2.49 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -71.00 359.77 2.99 -68.01 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.07 Total: 39.24 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.55 Total: -2.56 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -3.32 Total: -96.08 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -1.91 Total: -47.77 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.78 Total: -4.97 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.96 Total: 44.14 kcal Total: -71.00 2.99 -68.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784450458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.424 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds