Wall clock time and date at job start Tue Mar 31 2020 21:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00267 * 2 1 4 4 C 1.52997 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.52998 * 113.28471 * 313.06603 * 4 3 2 6 6 C 1.53495 * 114.20821 * 179.97438 * 4 3 2 7 7 N 1.47067 * 87.98968 * 220.14966 * 6 4 3 8 8 C 1.34767 * 136.05879 * 207.08951 * 7 6 4 9 9 O 1.21594 * 120.00293 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00454 * 180.02562 * 8 7 6 11 11 C 1.40130 * 120.00585 * 185.66159 * 10 8 7 12 12 C 1.38695 * 120.07546 * 33.99115 * 11 10 8 13 13 C 1.38201 * 120.01948 * 180.25661 * 12 11 10 14 14 C 1.38536 * 120.17566 * 359.49094 * 13 12 11 15 15 F 1.35105 * 119.92724 * 180.23421 * 14 13 12 16 16 C 1.38349 * 120.15337 * 0.25022 * 14 13 12 17 17 C 1.38735 * 119.97251 * 0.02562 * 16 14 13 18 18 O 1.35783 * 120.08513 * 179.97438 * 17 16 14 19 19 C 1.34806 * 117.00095 * 354.12013 * 18 17 16 20 20 H 1.08000 * 119.99855 * 354.47368 * 19 18 17 21 21 C 1.38637 * 120.00068 * 174.48289 * 19 18 17 22 22 N 1.31569 * 119.99914 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99728 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47706 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47282 * 119.99998 * 23 21 19 26 26 H 1.48502 * 109.47081 * 239.99475 * 23 21 19 27 27 C 1.47069 * 87.88103 * 27.34553 * 7 6 4 28 28 H 1.08997 * 109.47379 * 300.01107 * 1 2 3 29 29 H 1.09007 * 109.46678 * 60.00096 * 1 2 3 30 30 H 1.08996 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47411 * 59.99187 * 3 2 1 32 32 H 1.09003 * 109.46863 * 299.99588 * 3 2 1 33 33 H 1.09000 * 109.46622 * 286.93342 * 5 4 3 34 34 H 1.08997 * 109.47115 * 46.92803 * 5 4 3 35 35 H 1.08998 * 109.47306 * 166.93098 * 5 4 3 36 36 H 1.09003 * 113.46668 * 105.36527 * 6 4 3 37 37 H 1.09003 * 113.52080 * 334.94402 * 6 4 3 38 38 H 0.97007 * 119.99346 * 5.65268 * 10 8 7 39 39 H 1.08004 * 119.99029 * 359.97438 * 12 11 10 40 40 H 1.07998 * 119.90945 * 179.76204 * 13 12 11 41 41 H 1.07999 * 120.01095 * 179.97438 * 16 14 13 42 42 H 0.97000 * 119.99736 * 180.02562 * 22 21 19 43 43 H 1.08997 * 113.46923 * 87.44219 * 27 7 6 44 44 H 1.09002 * 113.46535 * 217.87735 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0622 0.1804 1.0278 6 6 4.2735 2.5305 0.0001 7 7 5.2341 1.9445 -0.9469 8 6 6.5282 2.1449 -1.2652 9 8 7.1700 3.0027 -0.6900 10 7 7.1109 1.3952 -2.2217 11 6 8.4842 1.5205 -2.4707 12 6 9.3575 1.7938 -1.4285 13 6 10.7110 1.9224 -1.6763 14 6 11.2011 1.7686 -2.9629 15 9 12.5259 1.8906 -3.1986 16 6 10.3372 1.4905 -4.0070 17 6 8.9766 1.3657 -3.7663 18 8 8.1265 1.0934 -4.7895 19 6 8.6496 1.0765 -6.0318 20 1 9.6796 1.3612 -6.1879 21 6 7.8653 0.6938 -7.1091 22 7 6.6106 0.3466 -6.9188 23 14 8.5901 0.6711 -8.8305 24 1 10.0101 1.1021 -8.7757 25 1 8.5110 -0.7052 -9.3828 26 1 7.8250 1.5987 -9.7020 27 6 4.1591 1.0480 -1.3982 28 1 -0.3634 0.5140 0.8898 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.9632 0.5993 2.0292 34 1 3.4865 -0.7428 0.9616 35 1 5.1120 -0.0307 0.8243 36 1 4.7141 2.7843 0.9642 37 1 3.6889 3.3470 -0.4239 38 1 6.5796 0.7687 -2.7377 39 1 8.9791 1.9107 -0.4237 40 1 11.3890 2.1391 -0.8640 41 1 10.7217 1.3714 -5.0092 42 1 6.0620 0.0784 -7.6725 43 1 3.5438 1.4730 -2.1912 44 1 4.5024 0.0387 -1.6254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788635070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:54 Heat of formation + Delta-G solvation = -72.456667 kcal Electronic energy + Delta-G solvation = -29210.389967 eV Core-core repulsion = 24852.303830 eV Total energy + Delta-G solvation = -4358.086137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.22263 -40.90243 -39.59089 -38.34313 -37.47208 -36.22201 -33.97545 -32.39685 -31.95022 -29.42570 -28.55902 -27.71563 -26.78198 -26.15871 -25.52561 -25.21496 -22.39502 -21.55422 -20.03490 -18.81434 -18.32245 -18.11728 -17.43746 -16.81337 -16.58849 -16.25667 -16.10156 -15.50751 -15.25085 -15.02772 -14.89703 -14.52790 -14.26276 -13.95117 -13.87635 -13.58166 -13.52553 -13.34123 -13.21797 -13.07486 -12.42646 -12.30319 -12.12283 -11.97203 -11.82570 -11.62275 -11.58613 -11.36904 -11.13692 -10.97595 -10.70029 -10.51191 -10.50780 -9.96500 -9.82655 -9.76386 -9.47089 -8.95622 -8.64674 -7.85758 -7.05842 -6.59365 -4.16621 1.86777 2.14176 2.59287 3.06375 3.08761 3.14144 3.34060 3.51395 3.85559 4.02308 4.16967 4.37276 4.62854 4.76369 4.81418 4.88951 4.96751 5.03105 5.06843 5.13567 5.18225 5.25405 5.33963 5.39320 5.41075 5.48553 5.59598 5.69593 5.75695 5.76962 5.77958 5.92757 6.05974 6.19215 6.26615 6.56609 6.76307 6.85670 6.93781 6.94373 7.09501 7.22385 7.47567 7.67454 7.85018 8.25794 8.85746 8.88916 9.48932 10.57967 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.003327 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.904159 B = 8413.714934 C =10879.873772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.080 3.920 4 C -0.097 4.097 5 C -0.118 4.118 6 C 0.139 3.861 7 N -0.662 5.662 8 C 0.737 3.263 9 O -0.582 6.582 10 N -0.661 5.661 11 C 0.083 3.917 12 C -0.051 4.051 13 C -0.226 4.226 14 C 0.127 3.873 15 F -0.152 7.152 16 C -0.256 4.256 17 C 0.157 3.843 18 O -0.169 6.169 19 C -0.390 4.390 20 H 0.094 0.906 21 C 0.043 3.957 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.109 3.891 28 H 0.039 0.961 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.411 0.589 39 H 0.136 0.864 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.271 0.729 43 H 0.086 0.914 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.567 -0.567 12.497 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.002 3.998 4 C -0.098 4.098 5 C -0.176 4.176 6 C 0.015 3.985 7 N -0.402 5.402 8 C 0.441 3.559 9 O -0.460 6.460 10 N -0.308 5.308 11 C -0.012 4.012 12 C -0.072 4.072 13 C -0.246 4.246 14 C 0.107 3.893 15 F -0.130 7.130 16 C -0.277 4.277 17 C 0.101 3.899 18 O -0.072 6.072 19 C -0.466 4.466 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.014 4.014 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.247 0.753 39 H 0.154 0.846 40 H 0.141 0.859 41 H 0.161 0.839 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.168 -0.204 12.691 16.263 hybrid contribution 0.088 0.052 -1.433 1.437 sum -10.080 -0.152 11.258 15.112 Atomic orbital electron populations 1.22743 0.81036 1.02820 0.99929 1.87897 1.19525 1.27476 1.95389 1.22336 0.91685 0.85044 1.00687 1.22283 0.92917 0.97338 0.97248 1.21391 1.01156 0.98297 0.96712 1.22793 0.87109 0.94786 0.93803 1.48418 1.07208 1.41621 1.42954 1.15106 0.79362 0.80980 0.80488 1.90906 1.62248 1.36092 1.56708 1.42132 1.07789 1.43054 1.37790 1.16620 0.81917 1.12030 0.90650 1.20493 0.91101 0.97633 0.97974 1.20440 0.95762 1.13325 0.95064 1.17433 0.76687 1.01175 0.93983 1.91410 1.32482 1.93685 1.95456 1.20847 0.92513 1.14375 0.99997 1.18794 0.88948 0.94785 0.87402 1.83941 1.33380 1.76147 1.13760 1.21391 0.98599 1.46861 0.79780 0.88815 1.25279 0.95431 0.95870 0.99649 1.70021 1.06100 1.41014 1.32269 0.85621 0.79152 0.78391 0.80190 1.18944 1.20016 1.20069 1.23189 0.86770 0.95625 0.95862 0.94188 0.93992 0.89607 0.92615 0.92545 0.92248 0.90899 0.92113 0.90020 0.90037 0.75326 0.84647 0.85921 0.83931 0.91926 0.89618 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.53 9.62 -35.23 -0.34 -3.87 16 3 C 0.08 0.63 5.52 37.16 0.21 0.83 16 4 C -0.10 -0.92 1.35 -153.86 -0.21 -1.13 16 5 C -0.12 -1.14 9.13 37.16 0.34 -0.80 16 6 C 0.14 1.51 7.77 -8.51 -0.07 1.44 16 7 N -0.66 -9.66 3.49 -190.80 -0.67 -10.33 16 8 C 0.74 13.92 8.52 -86.93 -0.74 13.18 16 9 O -0.58 -12.59 14.87 5.28 0.08 -12.52 16 10 N -0.66 -13.07 5.21 -14.08 -0.07 -13.15 16 11 C 0.08 1.79 6.29 -83.44 -0.52 1.26 16 12 C -0.05 -1.02 8.65 -39.43 -0.34 -1.36 16 13 C -0.23 -4.31 10.02 -39.48 -0.40 -4.70 16 14 C 0.13 2.60 7.29 -39.43 -0.29 2.31 16 15 F -0.15 -2.95 17.26 2.25 0.04 -2.91 16 16 C -0.26 -5.72 9.11 -39.36 -0.36 -6.08 16 17 C 0.16 3.71 6.66 -38.94 -0.26 3.45 16 18 O -0.17 -4.51 9.30 0.01 0.00 -4.51 16 19 C -0.39 -10.44 9.44 30.88 0.29 -10.15 16 20 H 0.09 2.37 5.30 -52.49 -0.28 2.09 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 22 N -0.86 -23.64 13.67 55.48 0.76 -22.88 16 23 Si 0.94 19.90 29.55 -169.99 -5.02 14.87 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 27 C 0.11 1.28 7.42 -8.37 -0.06 1.21 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 7.26 -51.93 -0.38 0.33 16 35 H 0.06 0.68 7.93 -51.93 -0.41 0.27 16 36 H 0.08 0.88 8.12 -51.93 -0.42 0.45 16 37 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.41 7.90 8.27 -40.82 -0.34 7.56 16 39 H 0.14 2.62 6.48 -52.48 -0.34 2.29 16 40 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 41 H 0.14 3.17 5.72 -52.49 -0.30 2.87 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.09 0.95 7.94 -51.93 -0.41 0.54 16 44 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -31.65 376.20 -6.75 -38.40 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.80 Total: 9.42 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.39 Total: 1.81 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.02 Total: -46.36 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.26 Total: -20.90 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.65 -6.75 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788635070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.055 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds