Wall clock time and date at job start Tue Mar 31 2020 21:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00267 * 2 1 4 4 C 1.52997 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.52998 * 113.28471 * 313.06603 * 4 3 2 6 6 C 1.53495 * 114.20821 * 179.97438 * 4 3 2 7 7 N 1.47067 * 87.98968 * 220.14966 * 6 4 3 8 8 C 1.34767 * 136.05879 * 207.08951 * 7 6 4 9 9 O 1.21594 * 120.00293 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00454 * 180.02562 * 8 7 6 11 11 C 1.40130 * 120.00585 * 185.66159 * 10 8 7 12 12 C 1.38695 * 120.07546 * 33.99115 * 11 10 8 13 13 C 1.38201 * 120.01948 * 180.25661 * 12 11 10 14 14 C 1.38536 * 120.17566 * 359.49094 * 13 12 11 15 15 F 1.35105 * 119.92724 * 180.23421 * 14 13 12 16 16 C 1.38349 * 120.15337 * 0.25022 * 14 13 12 17 17 C 1.38735 * 119.97251 * 0.02562 * 16 14 13 18 18 O 1.35783 * 120.08513 * 179.97438 * 17 16 14 19 19 C 1.34806 * 117.00095 * 354.12013 * 18 17 16 20 20 H 1.08000 * 119.99855 * 354.47368 * 19 18 17 21 21 C 1.38637 * 120.00068 * 174.48289 * 19 18 17 22 22 N 1.31569 * 119.99914 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99728 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47706 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47282 * 119.99998 * 23 21 19 26 26 H 1.48502 * 109.47081 * 239.99475 * 23 21 19 27 27 C 1.47069 * 87.88103 * 27.34553 * 7 6 4 28 28 H 1.08997 * 109.47379 * 300.01107 * 1 2 3 29 29 H 1.09007 * 109.46678 * 60.00096 * 1 2 3 30 30 H 1.08996 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47411 * 59.99187 * 3 2 1 32 32 H 1.09003 * 109.46863 * 299.99588 * 3 2 1 33 33 H 1.09000 * 109.46622 * 286.93342 * 5 4 3 34 34 H 1.08997 * 109.47115 * 46.92803 * 5 4 3 35 35 H 1.08998 * 109.47306 * 166.93098 * 5 4 3 36 36 H 1.09003 * 113.46668 * 105.36527 * 6 4 3 37 37 H 1.09003 * 113.52080 * 334.94402 * 6 4 3 38 38 H 0.97007 * 119.99346 * 5.65268 * 10 8 7 39 39 H 1.08004 * 119.99029 * 359.97438 * 12 11 10 40 40 H 1.07998 * 119.90945 * 179.76204 * 13 12 11 41 41 H 1.07999 * 120.01095 * 179.97438 * 16 14 13 42 42 H 0.97000 * 119.99736 * 180.02562 * 22 21 19 43 43 H 1.08997 * 113.46923 * 87.44219 * 27 7 6 44 44 H 1.09002 * 113.46535 * 217.87735 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0622 0.1804 1.0278 6 6 4.2735 2.5305 0.0001 7 7 5.2341 1.9445 -0.9469 8 6 6.5282 2.1449 -1.2652 9 8 7.1700 3.0027 -0.6900 10 7 7.1109 1.3952 -2.2217 11 6 8.4842 1.5205 -2.4707 12 6 9.3575 1.7938 -1.4285 13 6 10.7110 1.9224 -1.6763 14 6 11.2011 1.7686 -2.9629 15 9 12.5259 1.8906 -3.1986 16 6 10.3372 1.4905 -4.0070 17 6 8.9766 1.3657 -3.7663 18 8 8.1265 1.0934 -4.7895 19 6 8.6496 1.0765 -6.0318 20 1 9.6796 1.3612 -6.1879 21 6 7.8653 0.6938 -7.1091 22 7 6.6106 0.3466 -6.9188 23 14 8.5901 0.6711 -8.8305 24 1 10.0101 1.1021 -8.7757 25 1 8.5110 -0.7052 -9.3828 26 1 7.8250 1.5987 -9.7020 27 6 4.1591 1.0480 -1.3982 28 1 -0.3634 0.5140 0.8898 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.9632 0.5993 2.0292 34 1 3.4865 -0.7428 0.9616 35 1 5.1120 -0.0307 0.8243 36 1 4.7141 2.7843 0.9642 37 1 3.6889 3.3470 -0.4239 38 1 6.5796 0.7687 -2.7377 39 1 8.9791 1.9107 -0.4237 40 1 11.3890 2.1391 -0.8640 41 1 10.7217 1.3714 -5.0092 42 1 6.0620 0.0784 -7.6725 43 1 3.5438 1.4730 -2.1912 44 1 4.5024 0.0387 -1.6254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788635070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:53 Heat of formation + Delta-G solvation = -92.493215 kcal Electronic energy + Delta-G solvation = -29211.258817 eV Core-core repulsion = 24852.303830 eV Total energy + Delta-G solvation = -4358.954987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.83707 -42.09883 -41.09470 -39.77339 -38.33712 -37.87514 -35.56713 -34.32588 -32.97874 -31.12248 -30.07548 -28.36581 -27.84478 -27.35431 -27.11016 -26.03901 -24.07023 -23.19215 -21.39518 -20.16492 -19.79705 -19.60164 -18.92902 -18.29300 -17.45189 -17.20611 -17.07314 -16.94775 -16.79970 -16.58387 -16.26221 -15.99506 -15.73252 -15.47720 -15.25296 -14.91498 -14.84354 -14.78176 -14.26011 -14.04022 -13.98023 -13.78146 -13.41526 -13.09899 -13.05255 -12.70639 -12.69460 -12.63611 -12.38111 -12.28200 -12.13334 -11.89622 -11.68441 -11.39808 -11.29262 -11.08768 -10.84496 -10.49791 -9.85279 -9.57048 -8.74841 -8.52669 -6.18586 0.17994 0.43843 1.32221 1.36375 1.42048 1.52577 1.97126 2.12850 2.65249 2.72872 2.76717 3.03926 3.15188 3.30378 3.43259 3.74922 3.90805 3.99433 4.08416 4.14183 4.28902 4.34158 4.47388 4.48172 4.54033 4.56404 4.63251 4.66737 4.72530 4.76152 4.90240 4.92231 4.95681 4.99609 5.01900 5.11754 5.20183 5.27383 5.32908 5.39680 5.54443 5.91740 6.01162 6.10628 6.30744 6.83420 6.91913 7.39149 7.61603 8.68449 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.003327 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.904159 B = 8413.714934 C =10879.873772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.082 3.918 4 C -0.077 4.077 5 C -0.115 4.115 6 C 0.136 3.864 7 N -0.666 5.666 8 C 0.732 3.268 9 O -0.614 6.614 10 N -0.665 5.665 11 C 0.081 3.919 12 C -0.052 4.052 13 C -0.200 4.200 14 C 0.123 3.877 15 F -0.143 7.143 16 C -0.261 4.261 17 C 0.130 3.870 18 O -0.204 6.204 19 C -0.415 4.415 20 H 0.099 0.901 21 C -0.009 4.009 22 N -0.905 5.905 23 Si 1.013 2.987 24 H -0.257 1.257 25 H -0.266 1.266 26 H -0.269 1.269 27 C 0.101 3.899 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.410 0.590 39 H 0.146 0.854 40 H 0.160 0.840 41 H 0.137 0.863 42 H 0.275 0.725 43 H 0.095 0.905 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.872 -0.039 13.665 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C 0.005 3.995 4 C -0.078 4.078 5 C -0.172 4.172 6 C 0.014 3.986 7 N -0.404 5.404 8 C 0.436 3.564 9 O -0.495 6.495 10 N -0.311 5.311 11 C -0.015 4.015 12 C -0.072 4.072 13 C -0.219 4.219 14 C 0.103 3.897 15 F -0.122 7.122 16 C -0.282 4.282 17 C 0.076 3.924 18 O -0.109 6.109 19 C -0.491 4.491 20 H 0.116 0.884 21 C -0.209 4.209 22 N -0.542 5.542 23 Si 0.833 3.167 24 H -0.180 1.180 25 H -0.191 1.191 26 H -0.194 1.194 27 C -0.021 4.021 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.245 0.755 39 H 0.164 0.836 40 H 0.178 0.822 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.504 0.323 13.910 17.434 hybrid contribution 0.195 -0.093 -1.549 1.564 sum -10.309 0.230 12.361 16.097 Atomic orbital electron populations 1.22889 0.79621 1.03573 1.00866 1.87857 1.21115 1.28146 1.95614 1.22345 0.89895 0.85021 1.02232 1.22136 0.94290 0.96200 0.95207 1.21362 0.99778 0.98502 0.97593 1.23103 0.86208 0.96040 0.93293 1.48563 1.06436 1.42149 1.43234 1.15234 0.80687 0.80509 0.80000 1.90858 1.63584 1.37289 1.57724 1.42174 1.07348 1.43380 1.38231 1.16910 0.83186 1.11000 0.90385 1.20684 0.91339 0.97281 0.97932 1.20839 0.95810 1.09922 0.95379 1.17411 0.76861 1.01434 0.94008 1.91432 1.31693 1.93607 1.95453 1.20922 0.92487 1.14266 1.00494 1.19138 0.89532 0.95973 0.87760 1.83916 1.34480 1.78343 1.14207 1.21784 0.99105 1.47741 0.80480 0.88400 1.26399 0.95757 0.95151 1.03555 1.70130 1.07572 1.42840 1.33661 0.84603 0.78659 0.78759 0.74727 1.18031 1.19105 1.19388 1.23451 0.86013 0.94819 0.97860 0.92781 0.93475 0.89087 0.90417 0.91622 0.90660 0.90941 0.94146 0.89646 0.87943 0.75454 0.83640 0.82237 0.84506 0.91598 0.88715 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.72 9.62 -148.98 -1.43 -8.15 16 3 C 0.08 1.09 5.52 71.98 0.40 1.49 16 4 C -0.08 -1.35 1.35 -51.76 -0.07 -1.42 16 5 C -0.12 -2.08 9.13 71.98 0.66 -1.42 16 6 C 0.14 2.72 7.77 83.17 0.65 3.37 16 7 N -0.67 -19.23 3.49 -875.84 -3.06 -22.29 16 8 C 0.73 27.92 8.52 179.06 1.53 29.44 16 9 O -0.61 -26.53 14.87 -4.01 -0.06 -26.59 16 10 N -0.67 -27.08 5.21 -316.70 -1.65 -28.73 16 11 C 0.08 3.54 6.29 38.22 0.24 3.78 16 12 C -0.05 -2.01 8.65 22.37 0.19 -1.82 16 13 C -0.20 -7.17 10.02 22.33 0.22 -6.95 16 14 C 0.12 4.87 7.29 22.37 0.16 5.03 16 15 F -0.14 -5.31 17.26 44.97 0.78 -4.53 16 16 C -0.26 -11.77 9.11 22.42 0.20 -11.57 16 17 C 0.13 6.33 6.66 22.68 0.15 6.48 16 18 O -0.20 -11.40 9.30 -22.87 -0.21 -11.61 16 19 C -0.42 -23.03 9.44 67.92 0.64 -22.39 16 20 H 0.10 5.12 5.30 -2.91 -0.02 5.10 16 21 C -0.01 -0.49 5.49 84.83 0.47 -0.02 16 22 N -0.91 -51.50 13.67 21.61 0.30 -51.21 16 23 Si 1.01 41.27 29.55 68.60 2.03 43.29 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 26 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 27 C 0.10 2.33 7.42 83.26 0.62 2.95 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.77 7.90 -2.39 -0.02 0.75 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 1.33 7.26 -2.39 -0.02 1.31 16 35 H 0.04 0.89 7.93 -2.39 -0.02 0.87 16 36 H 0.09 1.68 8.12 -2.39 -0.02 1.66 16 37 H 0.10 1.67 8.11 -2.39 -0.02 1.65 16 38 H 0.41 16.60 8.27 -92.70 -0.77 15.83 16 39 H 0.15 5.45 6.48 -2.91 -0.02 5.44 16 40 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.14 6.24 5.72 -2.91 -0.02 6.22 16 42 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 43 H 0.09 2.04 7.94 -2.39 -0.02 2.02 16 44 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 Total: -1.00 -70.12 376.20 4.27 -65.84 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.28 Total: 35.48 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 7.31 Total: 8.49 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -4.41 Total: -102.23 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.71 Total: -46.35 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.53 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -70.12 4.27 -65.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788635070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.650 kcal (2) G-P(sol) polarization free energy of solvation -70.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds