Wall clock time and date at job start Tue Mar 31 2020 21:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.78118 * 2 1 4 4 C 1.54320 * 110.71905 * 123.23611 * 2 1 3 5 5 N 1.47024 * 107.27469 * 140.55888 * 4 2 1 6 6 C 1.34778 * 125.65111 * 181.02840 * 5 4 2 7 7 O 1.21587 * 120.00047 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99712 * 179.97438 * 6 5 4 9 9 C 1.40138 * 119.99750 * 185.52272 * 8 6 5 10 10 C 1.38694 * 120.07169 * 24.75000 * 9 8 6 11 11 C 1.38199 * 120.01951 * 179.97438 * 10 9 8 12 12 C 1.38552 * 120.17421 * 0.02562 * 11 10 9 13 13 F 1.35095 * 119.92279 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.14934 * 0.02562 * 12 11 10 15 15 C 1.38739 * 119.98016 * 359.72055 * 14 12 11 16 16 O 1.35775 * 120.09012 * 180.27480 * 15 14 12 17 17 C 1.34801 * 117.00095 * 5.23457 * 16 15 14 18 18 H 1.08005 * 120.00244 * 354.97303 * 17 16 15 19 19 C 1.38637 * 120.00113 * 174.97605 * 17 16 15 20 20 N 1.31569 * 120.00266 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00002 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46917 * 89.99942 * 21 19 17 23 23 H 1.48499 * 109.47147 * 209.99782 * 21 19 17 24 24 H 1.48500 * 109.47313 * 330.00405 * 21 19 17 25 25 C 1.47423 * 108.69712 * 1.28714 * 5 4 2 26 26 C 1.55126 * 104.72522 * 335.55284 * 25 5 4 27 27 H 1.09000 * 110.93874 * 155.29192 * 26 25 5 28 28 O 1.42904 * 111.19531 * 279.19036 * 26 25 5 29 29 H 1.08991 * 109.47690 * 298.21640 * 1 2 3 30 30 H 1.09005 * 109.46888 * 58.22248 * 1 2 3 31 31 H 1.09003 * 109.46845 * 178.21487 * 1 2 3 32 32 H 1.08995 * 109.47270 * 181.78406 * 3 2 1 33 33 H 1.08997 * 109.46839 * 301.78409 * 3 2 1 34 34 H 1.09004 * 109.46756 * 61.77764 * 3 2 1 35 35 H 1.09003 * 109.88563 * 21.14009 * 4 2 1 36 36 H 1.09002 * 110.01551 * 260.05096 * 4 2 1 37 37 H 0.96994 * 120.00128 * 5.80230 * 8 6 5 38 38 H 1.07997 * 119.99295 * 359.97218 * 10 9 8 39 39 H 1.07999 * 119.91706 * 180.02562 * 11 10 9 40 40 H 1.08004 * 120.00928 * 180.02562 * 14 12 11 41 41 H 0.96995 * 120.00222 * 179.97438 * 20 19 17 42 42 H 1.08996 * 110.37212 * 94.48553 * 25 5 4 43 43 H 1.09011 * 110.36746 * 216.80722 * 25 5 4 44 44 H 0.96696 * 114.00000 * 292.19357 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7911 1.2073 5 7 3.2445 -1.5507 0.7392 6 6 3.9922 -2.3836 1.4900 7 8 3.7189 -2.5562 2.6621 8 7 5.0430 -3.0251 0.9415 9 6 5.7497 -3.9777 1.6878 10 6 5.1287 -4.6387 2.7371 11 6 5.8265 -5.5783 3.4720 12 6 7.1471 -5.8626 3.1642 13 9 7.8246 -6.7816 3.8864 14 6 7.7738 -5.2067 2.1198 15 6 7.0777 -4.2661 1.3744 16 8 7.6889 -3.6251 0.3454 17 6 8.9371 -4.0250 0.0302 18 1 9.4368 -4.7648 0.6380 19 6 9.5794 -3.4865 -1.0741 20 7 8.9705 -2.5856 -1.8149 21 14 11.3093 -4.0401 -1.5104 22 1 11.2394 -5.2045 -2.4295 23 1 12.0322 -2.9267 -2.1761 24 1 12.0315 -4.4293 -0.2726 25 6 3.4666 -1.2455 -0.6859 26 6 2.0790 -0.7955 -1.2137 27 1 2.1844 -0.1521 -2.0872 28 8 1.2481 -1.9205 -1.5070 29 1 -0.3634 0.4858 0.9054 30 1 -0.3633 0.5412 -0.8737 31 1 -0.3633 -1.0272 -0.0320 32 1 3.1620 1.4058 -0.0320 33 1 1.6956 1.9622 -0.8735 34 1 1.7473 1.9426 0.9055 35 1 1.3129 -1.4758 1.5776 36 1 2.3734 -0.1043 1.9997 37 1 5.3125 -2.8246 0.0316 38 1 4.0995 -4.4192 2.9799 39 1 5.3411 -6.0924 4.2885 40 1 8.8032 -5.4304 1.8815 41 1 9.4201 -2.2086 -2.5873 42 1 4.1947 -0.4415 -0.7928 43 1 3.8032 -2.1362 -1.2167 44 1 1.5515 -2.4483 -2.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000790511695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:58 Heat of formation + Delta-G solvation = -113.186615 kcal Electronic energy + Delta-G solvation = -29843.633128 eV Core-core repulsion = 25483.780808 eV Total energy + Delta-G solvation = -4359.852320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.21188 -40.69124 -39.50159 -38.31872 -36.33284 -35.49132 -34.20006 -33.50799 -32.40571 -29.43963 -29.05561 -28.45519 -27.36896 -26.11745 -25.46800 -23.25875 -22.33301 -21.54496 -19.75577 -19.42005 -18.33232 -18.24370 -17.67222 -17.23562 -16.44705 -15.96775 -15.42036 -15.24585 -15.17493 -14.94032 -14.68727 -14.32176 -14.27781 -14.05940 -13.68635 -13.56550 -13.51712 -13.19046 -12.96576 -12.67209 -12.49139 -12.40854 -12.27337 -12.16409 -11.97251 -11.65609 -11.39630 -11.27807 -11.12747 -10.98337 -10.72621 -10.60919 -10.55515 -10.36945 -9.82814 -9.77168 -9.45784 -8.96486 -8.53770 -7.83655 -7.01507 -6.61152 -4.18390 1.88329 2.14567 2.74629 3.05615 3.07265 3.11450 3.43045 3.77615 3.84284 4.11543 4.28372 4.34899 4.40466 4.65425 4.87732 4.94313 4.96356 4.97158 5.14072 5.21777 5.40277 5.41828 5.47412 5.53387 5.60161 5.62180 5.75162 5.76489 5.78252 5.91612 5.95580 6.03132 6.14462 6.20605 6.34149 6.62503 6.73092 6.93230 6.95987 7.09047 7.19860 7.31478 7.42195 7.68967 7.83617 8.20929 8.82649 8.86120 9.47209 10.56261 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.003656 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.726914 B = 7657.804763 C = 9809.572809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.140 4.140 4 C 0.141 3.859 5 N -0.629 5.629 6 C 0.722 3.278 7 O -0.581 6.581 8 N -0.661 5.661 9 C 0.085 3.915 10 C -0.063 4.063 11 C -0.222 4.222 12 C 0.122 3.878 13 F -0.152 7.152 14 C -0.255 4.255 15 C 0.153 3.847 16 O -0.173 6.173 17 C -0.391 4.391 18 H 0.094 0.906 19 C 0.043 3.957 20 N -0.863 5.863 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.266 1.266 25 C 0.066 3.934 26 C 0.100 3.900 27 H 0.080 0.920 28 O -0.551 6.551 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.412 0.588 38 H 0.149 0.851 39 H 0.123 0.877 40 H 0.143 0.857 41 H 0.271 0.729 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.125 5.270 -1.748 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.070 4.070 3 C -0.197 4.197 4 C 0.018 3.982 5 N -0.367 5.367 6 C 0.425 3.575 7 O -0.459 6.459 8 N -0.308 5.308 9 C -0.011 4.011 10 C -0.084 4.084 11 C -0.243 4.243 12 C 0.102 3.898 13 F -0.131 7.131 14 C -0.276 4.276 15 C 0.097 3.903 16 O -0.076 6.076 17 C -0.467 4.467 18 H 0.111 0.889 19 C -0.162 4.162 20 N -0.497 5.497 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.058 4.058 26 C 0.040 3.960 27 H 0.098 0.902 28 O -0.357 6.357 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.167 0.833 39 H 0.141 0.859 40 H 0.160 0.840 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.628 5.649 -0.706 14.770 hybrid contribution 1.754 -0.554 -1.076 2.131 sum -11.874 5.095 -1.782 13.044 Atomic orbital electron populations 1.21603 0.92407 1.03017 1.01515 1.21668 0.97109 0.94813 0.93428 1.21839 1.01550 0.93725 1.02560 1.21831 0.86869 0.93913 0.95596 1.47333 1.31420 1.47407 1.10540 1.15330 0.79799 0.78358 0.84032 1.90848 1.72754 1.67921 1.14418 1.42257 1.30392 1.40569 1.17544 1.16729 0.88595 0.96654 0.99074 1.20823 1.00613 0.93283 0.93677 1.20505 0.93578 1.04927 1.05242 1.17450 0.90548 0.89773 0.91993 1.91404 1.80410 1.64461 1.76820 1.20819 1.02592 1.03904 1.00237 1.18697 0.89259 0.92098 0.90246 1.83905 1.29749 1.52013 1.41926 1.21343 0.88174 1.25120 1.12022 0.88855 1.25255 1.00138 0.95955 0.94809 1.70000 1.37823 1.25827 1.16069 0.85688 0.80041 0.78440 0.79218 1.19769 1.20200 1.19062 1.23129 0.98271 1.01776 0.82641 1.22958 0.88460 0.87808 0.96747 0.90225 1.86490 1.52437 1.41714 1.55049 0.92559 0.92364 0.91184 0.91901 0.91961 0.91529 0.91229 0.91538 0.75174 0.83335 0.85944 0.83956 0.91922 0.90180 0.90185 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 8.20 37.16 0.30 -0.77 16 2 C -0.07 -0.65 0.86 -152.68 -0.13 -0.78 16 3 C -0.14 -1.10 8.44 37.16 0.31 -0.78 16 4 C 0.14 1.77 6.04 -3.06 -0.02 1.75 16 5 N -0.63 -9.25 3.32 -176.10 -0.59 -9.84 16 6 C 0.72 13.50 8.30 -86.92 -0.72 12.78 16 7 O -0.58 -12.33 13.83 5.29 0.07 -12.25 16 8 N -0.66 -12.90 5.24 -14.07 -0.07 -12.98 16 9 C 0.08 1.82 6.45 -83.43 -0.54 1.29 16 10 C -0.06 -1.28 8.72 -39.43 -0.34 -1.62 16 11 C -0.22 -4.28 10.02 -39.48 -0.40 -4.67 16 12 C 0.12 2.50 7.29 -39.43 -0.29 2.22 16 13 F -0.15 -2.97 17.26 2.25 0.04 -2.93 16 14 C -0.25 -5.65 9.14 -39.36 -0.36 -6.01 16 15 C 0.15 3.58 6.66 -38.94 -0.26 3.32 16 16 O -0.17 -4.52 9.17 0.06 0.00 -4.52 16 17 C -0.39 -10.28 9.49 30.88 0.29 -9.99 16 18 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -23.20 13.67 55.48 0.76 -22.44 16 21 Si 0.94 19.59 29.55 -169.99 -5.02 14.57 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 C 0.07 0.76 5.97 -2.41 -0.01 0.75 16 26 C 0.10 0.92 3.66 -24.47 -0.09 0.83 16 27 H 0.08 0.58 8.04 -51.93 -0.42 0.16 16 28 O -0.55 -5.30 12.12 -35.23 -0.43 -5.73 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.69 7.30 -51.93 -0.38 0.31 16 32 H 0.06 0.55 7.42 -51.93 -0.39 0.16 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.93 7.82 -51.93 -0.41 0.53 16 36 H 0.07 0.84 7.85 -51.93 -0.41 0.44 16 37 H 0.41 7.80 6.88 -40.82 -0.28 7.52 16 38 H 0.15 2.98 5.78 -52.49 -0.30 2.68 16 39 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.14 3.14 5.63 -52.48 -0.30 2.84 16 41 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 43 H 0.08 0.93 7.38 -51.92 -0.38 0.55 16 44 H 0.38 2.35 9.12 45.56 0.42 2.76 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -31.29 365.27 -6.84 -38.14 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -4.76 Total: 13.17 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.34 Total: -0.69 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.10 Total: -45.26 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.35 Total: -22.50 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.29 -6.84 -38.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790511695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.050 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds