Wall clock time and date at job start Tue Mar 31 2020 21:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.78118 * 2 1 4 4 C 1.54320 * 110.71905 * 123.23611 * 2 1 3 5 5 N 1.47024 * 107.27469 * 140.55888 * 4 2 1 6 6 C 1.34778 * 125.65111 * 181.02840 * 5 4 2 7 7 O 1.21587 * 120.00047 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99712 * 179.97438 * 6 5 4 9 9 C 1.40138 * 119.99750 * 185.52272 * 8 6 5 10 10 C 1.38694 * 120.07169 * 24.75000 * 9 8 6 11 11 C 1.38199 * 120.01951 * 179.97438 * 10 9 8 12 12 C 1.38552 * 120.17421 * 0.02562 * 11 10 9 13 13 F 1.35095 * 119.92279 * 179.97438 * 12 11 10 14 14 C 1.38342 * 120.14934 * 0.02562 * 12 11 10 15 15 C 1.38739 * 119.98016 * 359.72055 * 14 12 11 16 16 O 1.35775 * 120.09012 * 180.27480 * 15 14 12 17 17 C 1.34801 * 117.00095 * 5.23457 * 16 15 14 18 18 H 1.08005 * 120.00244 * 354.97303 * 17 16 15 19 19 C 1.38637 * 120.00113 * 174.97605 * 17 16 15 20 20 N 1.31569 * 120.00266 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00002 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46917 * 89.99942 * 21 19 17 23 23 H 1.48499 * 109.47147 * 209.99782 * 21 19 17 24 24 H 1.48500 * 109.47313 * 330.00405 * 21 19 17 25 25 C 1.47423 * 108.69712 * 1.28714 * 5 4 2 26 26 C 1.55126 * 104.72522 * 335.55284 * 25 5 4 27 27 H 1.09000 * 110.93874 * 155.29192 * 26 25 5 28 28 O 1.42904 * 111.19531 * 279.19036 * 26 25 5 29 29 H 1.08991 * 109.47690 * 298.21640 * 1 2 3 30 30 H 1.09005 * 109.46888 * 58.22248 * 1 2 3 31 31 H 1.09003 * 109.46845 * 178.21487 * 1 2 3 32 32 H 1.08995 * 109.47270 * 181.78406 * 3 2 1 33 33 H 1.08997 * 109.46839 * 301.78409 * 3 2 1 34 34 H 1.09004 * 109.46756 * 61.77764 * 3 2 1 35 35 H 1.09003 * 109.88563 * 21.14009 * 4 2 1 36 36 H 1.09002 * 110.01551 * 260.05096 * 4 2 1 37 37 H 0.96994 * 120.00128 * 5.80230 * 8 6 5 38 38 H 1.07997 * 119.99295 * 359.97218 * 10 9 8 39 39 H 1.07999 * 119.91706 * 180.02562 * 11 10 9 40 40 H 1.08004 * 120.00928 * 180.02562 * 14 12 11 41 41 H 0.96995 * 120.00222 * 179.97438 * 20 19 17 42 42 H 1.08996 * 110.37212 * 94.48553 * 25 5 4 43 43 H 1.09011 * 110.36746 * 216.80722 * 25 5 4 44 44 H 0.96696 * 114.00000 * 292.19357 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7911 1.2073 5 7 3.2445 -1.5507 0.7392 6 6 3.9922 -2.3836 1.4900 7 8 3.7189 -2.5562 2.6621 8 7 5.0430 -3.0251 0.9415 9 6 5.7497 -3.9777 1.6878 10 6 5.1287 -4.6387 2.7371 11 6 5.8265 -5.5783 3.4720 12 6 7.1471 -5.8626 3.1642 13 9 7.8246 -6.7816 3.8864 14 6 7.7738 -5.2067 2.1198 15 6 7.0777 -4.2661 1.3744 16 8 7.6889 -3.6251 0.3454 17 6 8.9371 -4.0250 0.0302 18 1 9.4368 -4.7648 0.6380 19 6 9.5794 -3.4865 -1.0741 20 7 8.9705 -2.5856 -1.8149 21 14 11.3093 -4.0401 -1.5104 22 1 11.2394 -5.2045 -2.4295 23 1 12.0322 -2.9267 -2.1761 24 1 12.0315 -4.4293 -0.2726 25 6 3.4666 -1.2455 -0.6859 26 6 2.0790 -0.7955 -1.2137 27 1 2.1844 -0.1521 -2.0872 28 8 1.2481 -1.9205 -1.5070 29 1 -0.3634 0.4858 0.9054 30 1 -0.3633 0.5412 -0.8737 31 1 -0.3633 -1.0272 -0.0320 32 1 3.1620 1.4058 -0.0320 33 1 1.6956 1.9622 -0.8735 34 1 1.7473 1.9426 0.9055 35 1 1.3129 -1.4758 1.5776 36 1 2.3734 -0.1043 1.9997 37 1 5.3125 -2.8246 0.0316 38 1 4.0995 -4.4192 2.9799 39 1 5.3411 -6.0924 4.2885 40 1 8.8032 -5.4304 1.8815 41 1 9.4201 -2.2086 -2.5873 42 1 4.1947 -0.4415 -0.7928 43 1 3.8032 -2.1362 -1.2167 44 1 1.5515 -2.4483 -2.2583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790511695.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:57 Heat of formation + Delta-G solvation = -134.471497 kcal Electronic energy + Delta-G solvation = -29844.556109 eV Core-core repulsion = 25483.780808 eV Total energy + Delta-G solvation = -4360.775301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.82928 -42.02406 -40.90597 -39.75011 -38.01727 -36.36038 -35.72013 -34.60158 -34.30585 -31.12466 -30.17467 -29.88268 -28.02441 -27.50641 -27.08617 -24.39378 -23.86768 -23.16077 -21.16664 -20.31084 -20.12886 -19.77115 -18.92422 -18.48831 -17.83889 -17.29079 -16.98463 -16.79995 -16.60489 -16.40391 -15.98033 -15.75122 -15.56668 -15.33116 -15.22522 -15.06384 -14.78155 -14.61439 -14.04050 -13.84632 -13.82494 -13.54623 -13.44972 -13.29636 -13.10684 -13.04968 -12.73690 -12.62233 -12.38174 -12.15777 -12.04739 -11.87145 -11.67309 -11.45719 -11.34424 -11.20691 -10.94288 -10.82522 -9.78400 -9.54418 -8.69882 -8.51269 -6.17079 0.19314 0.43984 1.37325 1.41739 1.44137 1.52332 1.92990 2.13915 2.68080 2.79061 3.04910 3.08830 3.15674 3.39399 3.43844 3.52023 3.87311 3.91938 4.09927 4.13550 4.24712 4.33453 4.47091 4.49010 4.54143 4.62594 4.71030 4.75956 4.85729 4.92717 4.95857 5.00396 5.06201 5.15646 5.19098 5.20865 5.28434 5.32530 5.37026 5.52035 5.53331 5.89189 5.93201 6.03839 6.75171 6.84908 6.93247 7.33758 7.61502 8.69224 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.003656 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.726914 B = 7657.804763 C = 9809.572809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.062 4.062 3 C -0.136 4.136 4 C 0.134 3.866 5 N -0.624 5.624 6 C 0.716 3.284 7 O -0.611 6.611 8 N -0.662 5.662 9 C 0.083 3.917 10 C -0.065 4.065 11 C -0.199 4.199 12 C 0.118 3.882 13 F -0.144 7.144 14 C -0.259 4.259 15 C 0.128 3.872 16 O -0.204 6.204 17 C -0.417 4.417 18 H 0.099 0.901 19 C -0.007 4.007 20 N -0.904 5.904 21 Si 1.011 2.989 22 H -0.263 1.263 23 H -0.270 1.270 24 H -0.260 1.260 25 C 0.057 3.943 26 C 0.109 3.891 27 H 0.111 0.889 28 O -0.565 6.565 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.412 0.588 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.139 0.861 41 H 0.275 0.725 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.864 5.470 -1.996 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.063 4.063 3 C -0.194 4.194 4 C 0.012 3.988 5 N -0.361 5.361 6 C 0.419 3.581 7 O -0.492 6.492 8 N -0.309 5.309 9 C -0.013 4.013 10 C -0.086 4.086 11 C -0.219 4.219 12 C 0.098 3.902 13 F -0.123 7.123 14 C -0.280 4.280 15 C 0.074 3.926 16 O -0.109 6.109 17 C -0.493 4.493 18 H 0.116 0.884 19 C -0.206 4.206 20 N -0.540 5.540 21 Si 0.831 3.169 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.184 1.184 25 C -0.066 4.066 26 C 0.050 3.950 27 H 0.128 0.872 28 O -0.373 6.373 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.156 0.844 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -14.412 5.853 -0.962 15.585 hybrid contribution 1.807 -0.663 -0.861 2.109 sum -12.605 5.190 -1.824 13.753 Atomic orbital electron populations 1.21562 0.91349 1.02339 1.02750 1.21700 0.97761 0.95165 0.91691 1.21831 1.00845 0.92760 1.03918 1.22058 0.85754 0.93684 0.97317 1.47429 1.30959 1.46027 1.11680 1.15488 0.79788 0.78827 0.84031 1.90803 1.73511 1.69149 1.15722 1.42259 1.30614 1.40548 1.17432 1.16987 0.88284 0.96782 0.99261 1.20969 1.00906 0.93345 0.93396 1.20870 0.92791 1.03341 1.04855 1.17419 0.91004 0.89960 0.91782 1.91425 1.80336 1.64049 1.76457 1.20903 1.02541 1.03857 1.00650 1.18994 0.90106 0.93072 0.90413 1.83885 1.30091 1.53536 1.43414 1.21747 0.88755 1.25883 1.12870 0.88394 1.26345 1.04152 0.95813 0.94321 1.70103 1.39745 1.27319 1.16881 0.84685 0.74823 0.78285 0.79131 1.18826 1.19452 1.18352 1.23410 1.00446 1.01872 0.80829 1.23007 0.86456 0.87978 0.97595 0.87170 1.86466 1.52580 1.42194 1.56073 0.91731 0.90697 0.92819 0.92963 0.89782 0.91002 0.92414 0.91971 0.75139 0.82852 0.82502 0.84380 0.91574 0.89789 0.90514 0.75482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 8.20 71.98 0.59 -1.21 16 2 C -0.06 -1.06 0.86 -51.00 -0.04 -1.10 16 3 C -0.14 -1.84 8.44 71.98 0.61 -1.23 16 4 C 0.13 3.34 6.04 86.73 0.52 3.86 16 5 N -0.62 -18.50 3.32 -829.31 -2.76 -21.26 16 6 C 0.72 27.28 8.30 179.05 1.49 28.76 16 7 O -0.61 -26.25 13.83 -3.99 -0.06 -26.31 16 8 N -0.66 -26.59 5.24 -316.70 -1.66 -28.25 16 9 C 0.08 3.62 6.45 38.22 0.25 3.87 16 10 C -0.07 -2.60 8.72 22.37 0.19 -2.41 16 11 C -0.20 -7.26 10.02 22.34 0.22 -7.04 16 12 C 0.12 4.71 7.29 22.37 0.16 4.87 16 13 F -0.14 -5.36 17.26 44.97 0.78 -4.59 16 14 C -0.26 -11.58 9.14 22.41 0.20 -11.38 16 15 C 0.13 6.15 6.66 22.68 0.15 6.30 16 16 O -0.20 -11.11 9.17 -22.72 -0.21 -11.31 16 17 C -0.42 -22.60 9.49 67.92 0.64 -21.95 16 18 H 0.10 5.01 5.20 -2.91 -0.02 4.99 16 19 C -0.01 -0.34 5.49 84.83 0.47 0.13 16 20 N -0.90 -49.86 13.67 21.61 0.30 -49.57 16 21 Si 1.01 40.30 29.55 68.60 2.03 42.32 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 C 0.06 1.31 5.97 86.93 0.52 1.83 16 26 C 0.11 1.81 3.66 32.06 0.12 1.93 16 27 H 0.11 1.24 8.04 -2.39 -0.02 1.22 16 28 O -0.57 -9.97 12.12 -148.98 -1.81 -11.78 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.05 0.98 7.30 -2.39 -0.02 0.97 16 32 H 0.05 0.83 7.42 -2.39 -0.02 0.81 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 1.56 7.82 -2.39 -0.02 1.54 16 36 H 0.06 1.58 7.85 -2.39 -0.02 1.56 16 37 H 0.41 16.30 6.88 -92.71 -0.64 15.67 16 38 H 0.15 6.06 5.78 -2.91 -0.02 6.04 16 39 H 0.16 4.66 8.06 -2.91 -0.02 4.64 16 40 H 0.14 6.21 5.63 -2.91 -0.02 6.19 16 41 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 42 H 0.08 1.88 7.69 -2.39 -0.02 1.86 16 43 H 0.08 1.80 7.38 -2.38 -0.02 1.78 16 44 H 0.39 4.26 9.12 -74.06 -0.68 3.59 16 Total: -1.00 -68.78 365.27 2.47 -66.32 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -0.24 Total: 39.20 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.09 Total: 5.22 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -4.12 Total: -99.07 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.07 Total: -49.40 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.78 Total: -4.59 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -68.78 2.47 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790511695.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.156 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds