Wall clock time and date at job start Tue Mar 31 2020 20:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99879 * 2 1 4 4 H 1.48505 * 109.47218 * 269.99980 * 3 2 1 5 5 H 1.48493 * 109.47362 * 30.00293 * 3 2 1 6 6 H 1.48506 * 109.47140 * 150.00456 * 3 2 1 7 7 C 1.37883 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99359 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99953 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46615 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99415 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00115 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.99873 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.47301 * 180.02562 * 13 11 10 15 15 C 1.40022 * 119.99821 * 180.02562 * 14 13 11 16 16 C 1.38657 * 120.09875 * 0.02562 * 15 14 13 17 17 C 1.38269 * 119.99773 * 179.97438 * 16 15 14 18 18 N 1.48015 * 119.90063 * 180.02562 * 17 16 15 19 19 O 1.21796 * 119.99844 * 359.97438 * 18 17 16 20 20 O 1.21797 * 119.99518 * 180.02562 * 18 17 16 21 21 C 1.38255 * 120.19644 * 359.97438 * 17 16 15 22 22 C 1.38270 * 120.18933 * 0.02562 * 21 17 16 23 23 C 1.38658 * 119.99908 * 359.97438 * 22 21 17 24 24 N 1.40026 * 120.09511 * 180.27871 * 23 22 21 25 25 C 1.46503 * 119.99826 * 359.72093 * 24 23 22 26 26 C 1.52994 * 109.46859 * 179.97438 * 25 24 23 27 27 O 1.42898 * 109.47353 * 65.00479 * 26 25 24 28 28 H 0.96999 * 119.99755 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46949 * 60.00415 * 9 7 2 30 30 H 1.09001 * 109.47130 * 299.99878 * 9 7 2 31 31 H 0.96990 * 120.00490 * 0.02562 * 10 9 7 32 32 H 1.09005 * 109.47142 * 60.00051 * 13 11 10 33 33 H 1.09005 * 109.47411 * 300.00391 * 13 11 10 34 34 H 0.97000 * 119.99946 * 0.02562 * 14 13 11 35 35 H 1.07997 * 120.00158 * 359.95686 * 16 15 14 36 36 H 1.08001 * 119.90464 * 179.97438 * 21 17 16 37 37 H 1.07997 * 119.99807 * 179.97438 * 22 21 17 38 38 H 0.97001 * 119.99912 * 179.72655 * 24 23 22 39 39 H 1.08997 * 109.47472 * 300.00411 * 25 24 23 40 40 H 1.09003 * 109.46565 * 60.00109 * 25 24 23 41 41 H 1.09001 * 109.47240 * 185.00269 * 26 25 24 42 42 H 1.08999 * 109.47904 * 305.00435 * 26 25 24 43 43 H 0.96693 * 114.00419 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5614 -5.1049 -0.0006 13 6 2.7330 -6.0288 -0.0022 14 7 2.0005 -7.2975 -0.0023 15 6 2.7006 -8.5101 -0.0023 16 6 4.0872 -8.5125 -0.0018 17 6 4.7765 -9.7111 -0.0013 18 7 6.2566 -9.7111 -0.0001 19 8 6.8656 -8.6563 0.0000 20 8 6.8655 -10.7659 -0.0001 21 6 4.0872 -10.9096 -0.0009 22 6 2.7046 -10.9165 -0.0014 23 6 2.0053 -9.7192 -0.0019 24 7 0.6050 -9.7238 0.0034 25 6 -0.1232 -10.9950 0.0033 26 6 -1.6283 -10.7204 0.0103 27 8 -1.9999 -10.0719 -1.2076 28 1 -0.4850 0.8401 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 3.1566 -3.4355 -0.0021 32 1 3.3603 -5.9711 0.8874 33 1 3.3591 -5.9711 -0.8926 34 1 1.0305 -7.2975 -0.0023 35 1 4.6288 -7.5781 -0.0020 36 1 4.6304 -11.8431 -0.0009 37 1 2.1693 -11.8545 -0.0015 38 1 0.1173 -8.8854 0.0071 39 1 0.1386 -11.5638 -0.8889 40 1 0.1455 -11.5677 0.8910 41 1 -2.1691 -11.6626 0.0998 42 1 -1.8765 -10.0774 0.8546 43 1 -2.9427 -9.8673 -1.2726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795051219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:13 Heat of formation + Delta-G solvation = -85.730674 kcal Electronic energy + Delta-G solvation = -28239.592517 eV Core-core repulsion = 23900.850738 eV Total energy + Delta-G solvation = -4338.741779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.02611 -41.28077 -40.48000 -38.33094 -37.48353 -36.68405 -36.29954 -36.06863 -34.42038 -32.12724 -31.48665 -29.78770 -29.40527 -27.74696 -26.40108 -24.86051 -24.04164 -22.83321 -22.39935 -21.53137 -20.43374 -19.60458 -19.17206 -18.67597 -18.42681 -18.39453 -17.89879 -17.45775 -17.10250 -16.80652 -16.37492 -16.32905 -15.86654 -15.49223 -15.24003 -15.08579 -14.96231 -14.64720 -14.40091 -14.11114 -14.00079 -13.92511 -13.73347 -13.42336 -12.96851 -12.73676 -12.68549 -12.44794 -12.26135 -12.25283 -12.14431 -12.10005 -11.67077 -11.51624 -11.23302 -11.00249 -10.98469 -10.83204 -9.93006 -9.48941 -8.31950 -8.17188 -6.47845 -0.99110 0.24007 0.57870 0.64588 1.43081 1.44289 1.55587 1.57366 1.82816 2.17680 2.36432 2.49773 2.64688 3.03750 3.32261 3.49846 3.73245 3.86576 3.90844 3.99879 4.04847 4.22775 4.26395 4.30831 4.42685 4.53250 4.56829 4.73607 4.83046 4.88173 4.97250 5.05767 5.20674 5.21281 5.41665 5.53300 5.59783 5.74816 5.81377 6.10775 6.28284 6.54166 6.62574 6.71076 6.77962 6.81973 7.19234 7.34602 8.79989 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009122 B = 0.002627 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.615246 B =10654.351115 C =13633.561510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.267 3.733 10 N -0.700 5.700 11 C 0.494 3.506 12 O -0.593 6.593 13 C 0.117 3.883 14 N -0.735 5.735 15 C 0.150 3.850 16 C -0.113 4.113 17 C -0.080 4.080 18 N 0.045 4.955 19 O -0.214 6.214 20 O -0.188 6.188 21 C -0.040 4.040 22 C -0.159 4.159 23 C 0.216 3.784 24 N -0.726 5.726 25 C 0.114 3.886 26 C 0.059 3.941 27 O -0.598 6.598 28 H 0.269 0.731 29 H -0.009 1.009 30 H -0.008 1.008 31 H 0.412 0.588 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.405 0.595 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.401 0.599 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 -26.529 1.167 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.180 1.180 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.281 3.719 12 O -0.475 6.475 13 C -0.011 4.011 14 N -0.371 5.371 15 C 0.044 3.956 16 C -0.140 4.140 17 C -0.167 4.167 18 N 0.553 4.447 19 O -0.419 6.419 20 O -0.400 6.400 21 C -0.062 4.062 22 C -0.183 4.183 23 C 0.105 3.895 24 N -0.354 5.354 25 C -0.009 4.009 26 C -0.019 4.019 27 O -0.407 6.407 28 H 0.078 0.922 29 H 0.009 0.991 30 H 0.010 0.990 31 H 0.248 0.752 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.244 0.756 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.195 0.805 38 H 0.237 0.763 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.253 -26.600 1.058 26.622 hybrid contribution -0.375 1.803 0.061 1.843 sum -0.628 -24.797 1.119 24.830 Atomic orbital electron populations 1.70120 1.08169 1.28570 1.49982 1.26012 0.95750 1.03773 0.93873 0.85201 0.78562 0.77190 0.78572 1.19705 1.21002 1.17977 1.21628 0.94393 0.90593 1.52863 0.89769 1.18573 0.88576 0.84010 0.94402 1.46118 1.11618 1.05282 1.71954 1.21098 0.89616 0.85149 0.76036 1.90624 1.18880 1.85163 1.52877 1.21110 0.93176 0.81202 1.05618 1.44112 1.08489 1.01026 1.83447 1.17017 0.89986 0.85214 1.03374 1.20038 0.91881 0.97889 1.04159 1.20557 0.76939 0.97338 1.21873 1.43836 1.04771 0.99736 0.96405 1.94512 1.70276 1.21052 1.56093 1.94456 1.70190 1.20851 1.54537 1.20831 0.94198 0.96496 0.94686 1.20607 0.91969 0.97215 1.08555 1.17966 0.84800 0.92335 0.94421 1.44975 1.01598 1.09841 1.79012 1.21827 0.90192 0.85226 1.03654 1.22535 0.94331 0.98392 0.86610 1.86484 1.32464 1.81730 1.39987 0.92240 0.99124 0.99026 0.75192 0.86872 0.87085 0.75622 0.83264 0.81783 0.80544 0.76328 0.90444 0.87658 0.89172 0.92723 0.75151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 13.29 21.45 0.28 -54.46 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.98 41.57 29.54 68.60 2.03 43.59 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.56 -29.31 9.28 25.60 0.24 -29.08 16 8 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 9 C 0.27 13.95 5.43 85.63 0.46 14.42 16 10 N -0.70 -27.25 5.55 -466.79 -2.59 -29.84 16 11 C 0.49 17.68 7.90 87.66 0.69 18.37 16 12 O -0.59 -26.08 15.67 -3.03 -0.05 -26.13 16 13 C 0.12 2.81 5.40 85.63 0.46 3.27 16 14 N -0.74 -17.30 5.70 -342.55 -1.95 -19.25 16 15 C 0.15 3.12 6.67 38.23 0.26 3.37 16 16 C -0.11 -2.48 8.82 22.38 0.20 -2.28 16 17 C -0.08 -1.79 6.85 36.39 0.25 -1.54 16 18 N 0.04 1.24 4.45 -46.44 -0.21 1.04 16 19 O -0.21 -6.58 18.44 18.89 0.35 -6.23 16 20 O -0.19 -5.28 18.44 18.89 0.35 -4.93 16 21 C -0.04 -0.66 9.55 22.28 0.21 -0.44 16 22 C -0.16 -2.03 9.31 22.38 0.21 -1.83 16 23 C 0.22 3.61 6.67 38.23 0.26 3.87 16 24 N -0.73 -10.54 5.68 -338.84 -1.92 -12.46 16 25 C 0.11 0.93 5.30 86.38 0.46 1.39 16 26 C 0.06 0.45 7.18 71.98 0.52 0.97 16 27 O -0.60 -7.81 13.60 -148.98 -2.03 -9.84 16 28 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 29 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 31 H 0.41 13.08 8.32 -92.72 -0.77 12.31 16 32 H 0.11 2.26 7.95 -2.38 -0.02 2.24 16 33 H 0.11 2.26 7.96 -2.38 -0.02 2.24 16 34 H 0.41 10.45 5.62 -92.71 -0.52 9.93 16 35 H 0.15 3.21 6.28 -2.91 -0.02 3.19 16 36 H 0.16 2.09 7.60 -2.91 -0.02 2.07 16 37 H 0.18 1.03 6.74 -2.91 -0.02 1.01 16 38 H 0.40 7.06 6.65 -92.71 -0.62 6.44 16 39 H 0.08 0.62 7.96 -2.39 -0.02 0.60 16 40 H 0.11 0.36 7.95 -2.39 -0.02 0.34 16 41 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.40 2.31 9.12 -74.06 -0.68 1.63 16 Total: -1.00 -76.28 376.11 -2.54 -78.82 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -1.47 Total: 28.43 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 4.67 Total: 11.27 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -6.39 Total: -114.98 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -1.38 Total: -47.13 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -76.28 -2.54 -78.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795051219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.909 kcal (2) G-P(sol) polarization free energy of solvation -76.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds