Wall clock time and date at job start Tue Mar 31 2020 20:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86805 * 119.99540 * 2 1 4 4 H 1.48503 * 109.47152 * 269.99829 * 3 2 1 5 5 H 1.48497 * 109.47214 * 29.99970 * 3 2 1 6 6 H 1.48504 * 109.47273 * 150.00028 * 3 2 1 7 7 C 1.38651 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00211 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00088 * 180.02562 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38882 * 120.06744 * 174.18760 * 10 9 7 12 12 C 1.38103 * 119.92876 * 179.79047 * 11 10 9 13 13 C 1.38296 * 120.06830 * 0.48814 * 12 11 10 14 14 C 1.50705 * 119.92847 * 179.76335 * 13 12 11 15 15 C 1.50703 * 109.47024 * 269.97747 * 14 13 12 16 16 O 1.21282 * 120.00279 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99693 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00022 * 180.02562 * 17 15 14 19 19 H 1.09002 * 115.55000 * 350.71637 * 18 17 15 20 20 C 1.52997 * 117.50065 * 136.39250 * 18 17 15 21 21 C 1.53002 * 60.00183 * 107.48696 * 20 18 17 22 22 H 1.08995 * 117.50159 * 252.51083 * 21 20 18 23 23 C 1.50702 * 117.49618 * 107.48757 * 21 20 18 24 24 C 1.38680 * 120.41496 * 171.09889 * 23 21 20 25 25 C 1.38624 * 118.41457 * 179.78051 * 24 23 21 26 26 C 1.38226 * 119.16510 * 0.52085 * 25 24 23 27 27 N 1.31851 * 120.76187 * 359.71569 * 26 25 24 28 28 C 1.31884 * 121.72592 * 0.02562 * 27 26 25 29 29 C 1.38303 * 120.14133 * 359.74607 * 13 12 11 30 30 C 1.38099 * 120.06394 * 0.02562 * 29 13 12 31 31 H 0.97002 * 120.00417 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.03720 * 0.03026 * 11 10 9 33 33 H 1.08007 * 119.96358 * 180.23093 * 12 11 10 34 34 H 1.08997 * 109.46902 * 29.98188 * 14 13 12 35 35 H 1.09002 * 109.46642 * 149.97898 * 14 13 12 36 36 H 0.97001 * 119.99831 * 359.97438 * 17 15 14 37 37 H 1.08999 * 117.49931 * 214.98060 * 20 18 17 38 38 H 1.09004 * 117.50069 * 359.97438 * 20 18 17 39 39 H 1.07999 * 120.78805 * 0.02830 * 24 23 21 40 40 H 1.08006 * 120.41355 * 180.26375 * 25 24 23 41 41 H 1.07997 * 119.61665 * 179.70358 * 26 25 24 42 42 H 1.08001 * 119.61591 * 179.97438 * 28 27 26 43 43 H 1.07996 * 119.96552 * 180.02562 * 29 13 12 44 44 H 1.08007 * 120.03117 * 179.97438 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4055 -0.1051 11 6 5.3549 -2.4715 -0.2326 12 6 5.9794 -3.6990 -0.3359 13 6 5.2299 -4.8611 -0.3228 14 6 5.9142 -6.1986 -0.4412 15 6 6.0197 -6.5819 -1.8948 16 8 5.5827 -5.8417 -2.7504 17 7 6.5996 -7.7474 -2.2440 18 6 6.7027 -8.1198 -3.6570 19 1 6.1523 -7.4854 -4.3518 20 6 8.0311 -8.7074 -4.1377 21 6 6.8045 -9.6099 -3.9892 22 1 6.7948 -10.3130 -3.1565 23 6 6.1359 -10.0884 -5.2522 24 6 5.1389 -11.0509 -5.1974 25 6 4.5488 -11.4576 -6.3840 26 6 4.9781 -10.9022 -7.5748 27 7 5.9324 -9.9926 -7.5893 28 6 6.5126 -9.5783 -6.4798 29 6 3.8536 -4.7985 -0.2008 30 6 3.2237 -3.5743 -0.0923 31 1 -0.4851 0.8400 -0.0004 32 1 5.9405 -1.5642 -0.2469 33 1 7.0540 -3.7511 -0.4314 34 1 6.9126 -6.1354 -0.0086 35 1 5.3342 -6.9518 0.0921 36 1 6.9494 -8.3392 -1.5596 37 1 8.3544 -8.4599 -5.1487 38 1 8.8285 -8.8165 -3.4026 39 1 4.8270 -11.4706 -4.2525 40 1 3.7663 -12.2020 -6.3785 41 1 4.5267 -11.2172 -8.5040 42 1 7.2913 -8.8317 -6.5313 43 1 3.2711 -5.7078 -0.1904 44 1 2.1489 -3.5260 0.0025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798270576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:15 Heat of formation + Delta-G solvation = 25.984441 kcal Electronic energy + Delta-G solvation = -26645.094592 eV Core-core repulsion = 22722.046407 eV Total energy + Delta-G solvation = -3923.048185 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.81795 -39.90060 -39.00605 -37.70533 -36.55019 -33.63944 -32.70172 -32.46327 -31.57259 -30.69343 -30.21183 -26.97547 -25.01905 -24.81221 -23.87927 -22.57456 -22.06866 -21.24221 -21.04118 -20.11656 -17.86675 -17.78193 -17.31099 -17.02821 -17.00050 -16.19851 -15.54919 -15.35492 -14.78989 -14.68687 -14.46087 -14.22943 -14.02419 -13.90396 -13.71597 -13.46510 -13.43643 -13.10501 -12.70168 -12.61017 -12.47933 -12.18553 -12.17954 -11.92518 -11.58780 -11.29277 -11.14341 -10.92454 -10.74079 -10.65524 -10.14233 -10.13235 -9.87596 -9.78242 -9.46570 -9.35806 -8.83800 -8.81394 -8.21282 -7.28743 -6.38972 -4.05342 0.67655 0.89429 2.15285 2.18264 2.58077 2.92604 3.24203 3.28129 3.28653 3.42537 3.67670 4.00683 4.23512 4.26287 4.32671 4.38410 4.46475 4.49864 4.59683 4.62362 4.82827 4.87457 4.90831 5.10630 5.13044 5.18438 5.21824 5.30136 5.40837 5.51940 5.55650 5.64351 5.67132 5.73851 5.77267 5.87129 6.15652 6.24686 6.30680 6.35276 6.58814 6.81729 7.04107 7.23909 7.32599 7.32982 7.60783 7.64256 7.83137 8.06686 8.20923 8.96386 9.58996 10.68710 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.001914 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.117017 B =14626.588685 C =15466.967312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.191 4.191 12 C -0.061 4.061 13 C -0.164 4.164 14 C -0.080 4.080 15 C 0.513 3.487 16 O -0.514 6.514 17 N -0.713 5.713 18 C 0.104 3.896 19 H 0.139 0.861 20 C -0.184 4.184 21 C -0.126 4.126 22 H 0.118 0.882 23 C -0.100 4.100 24 C -0.069 4.069 25 C -0.169 4.169 26 C 0.092 3.908 27 N -0.481 5.481 28 C 0.098 3.902 29 C -0.058 4.058 30 C -0.219 4.219 31 H 0.279 0.721 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.400 0.600 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.106 0.894 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.356 -24.741 -6.322 29.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.210 4.210 12 C -0.080 4.080 13 C -0.165 4.165 14 C -0.120 4.120 15 C 0.300 3.700 16 O -0.387 6.387 17 N -0.364 5.364 18 C -0.003 4.003 19 H 0.157 0.843 20 C -0.223 4.223 21 C -0.146 4.146 22 H 0.136 0.864 23 C -0.103 4.103 24 C -0.095 4.095 25 C -0.189 4.189 26 C -0.065 4.065 27 N -0.189 5.189 28 C -0.058 4.058 29 C -0.076 4.076 30 C -0.239 4.239 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.235 0.765 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.173 0.827 42 H 0.173 0.827 43 H 0.125 0.875 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.141 -23.416 -7.710 28.931 hybrid contribution -0.055 -0.206 1.091 1.112 sum 15.086 -23.622 -6.618 28.799 Atomic orbital electron populations 1.69645 1.05560 1.28455 1.48148 1.24469 0.95037 0.98836 0.95714 0.86177 0.80298 0.81413 0.78984 1.19871 1.20810 1.18365 1.20772 0.76904 0.96632 1.52099 0.87630 1.83570 1.22614 1.25780 1.80294 1.19125 0.91720 0.85480 0.92657 1.20155 0.91984 0.97755 1.11136 1.20402 0.98154 0.91365 0.98035 1.18681 0.93576 0.92489 1.11730 1.20424 1.02417 0.97155 0.91971 1.21107 0.76583 0.80055 0.92249 1.90763 1.45564 1.50314 1.52062 1.45520 1.62266 1.22336 1.06286 1.21726 0.99903 0.93469 0.85191 0.84314 1.23655 0.92065 1.02809 1.03751 1.21465 1.01791 0.94372 0.96973 0.86371 1.20068 0.97564 0.97831 0.94790 1.21433 0.93991 0.95112 0.98949 1.22165 1.01430 1.01814 0.93473 1.22812 0.93167 0.92426 0.98130 1.67722 1.08471 1.11575 1.31116 1.22719 0.97961 0.97948 0.87221 1.20564 0.93242 0.96739 0.97064 1.21224 1.01057 0.91804 1.09771 0.91079 0.86522 0.87172 0.88724 0.88745 0.76545 0.87486 0.87654 0.84763 0.84607 0.82698 0.82706 0.87544 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.81 13.96 55.48 0.77 -25.04 16 2 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 22.08 28.62 -169.99 -4.86 17.21 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.39 -11.18 9.95 30.88 0.31 -10.87 16 8 H 0.11 3.10 5.44 -52.48 -0.29 2.82 16 9 O -0.22 -5.89 8.59 0.04 0.00 -5.89 16 10 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 11 C -0.19 -3.92 9.99 -39.39 -0.39 -4.31 16 12 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 13 C -0.16 -2.71 4.38 -104.57 -0.46 -3.17 16 14 C -0.08 -0.90 5.83 -29.03 -0.17 -1.07 16 15 C 0.51 6.55 7.82 -10.98 -0.09 6.46 16 16 O -0.51 -9.32 15.60 5.56 0.09 -9.23 16 17 N -0.71 -6.12 5.57 -53.80 -0.30 -6.42 16 18 C 0.10 0.90 6.07 -67.93 -0.41 0.49 16 19 H 0.14 1.60 7.40 -51.93 -0.38 1.22 16 20 C -0.18 -1.12 9.79 -26.73 -0.26 -1.38 16 21 C -0.13 -0.82 5.99 -91.77 -0.55 -1.37 16 22 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 23 C -0.10 -0.80 5.62 -104.48 -0.59 -1.39 16 24 C -0.07 -0.50 9.89 -39.28 -0.39 -0.89 16 25 C -0.17 -1.16 10.11 -39.44 -0.40 -1.56 16 26 C 0.09 0.75 11.18 -17.55 -0.20 0.55 16 27 N -0.48 -4.97 10.36 -13.26 -0.14 -5.11 16 28 C 0.10 0.89 10.47 -17.55 -0.18 0.71 16 29 C -0.06 -1.07 9.69 -39.61 -0.38 -1.46 16 30 C -0.22 -4.89 9.17 -39.40 -0.36 -5.25 16 31 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 33 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 34 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.40 2.04 8.83 -40.82 -0.36 1.68 16 37 H 0.11 0.60 6.20 -51.93 -0.32 0.28 16 38 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.16 1.16 6.04 -52.49 -0.32 0.85 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.13 3.09 5.64 -52.48 -0.30 2.79 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -35.40 380.46 -9.29 -44.69 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.32 Total: 4.70 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -5.26 Total: -20.65 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.34 Total: -36.57 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.40 -9.29 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798270576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.672 kcal (2) G-P(sol) polarization free energy of solvation -35.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds