Wall clock time and date at job start Tue Mar 31 2020 20:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86805 * 119.99540 * 2 1 4 4 H 1.48503 * 109.47152 * 269.99829 * 3 2 1 5 5 H 1.48497 * 109.47214 * 29.99970 * 3 2 1 6 6 H 1.48504 * 109.47273 * 150.00028 * 3 2 1 7 7 C 1.38651 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00211 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00088 * 180.02562 * 7 2 1 10 10 C 1.35754 * 116.99935 * 185.05715 * 9 7 2 11 11 C 1.38882 * 120.06744 * 174.18760 * 10 9 7 12 12 C 1.38103 * 119.92876 * 179.79047 * 11 10 9 13 13 C 1.38296 * 120.06830 * 0.48814 * 12 11 10 14 14 C 1.50705 * 119.92847 * 179.76335 * 13 12 11 15 15 C 1.50703 * 109.47024 * 269.97747 * 14 13 12 16 16 O 1.21282 * 120.00279 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99693 * 180.02562 * 15 14 13 18 18 C 1.46499 * 120.00022 * 180.02562 * 17 15 14 19 19 H 1.09002 * 115.55000 * 350.71637 * 18 17 15 20 20 C 1.52997 * 117.50065 * 136.39250 * 18 17 15 21 21 C 1.53002 * 60.00183 * 107.48696 * 20 18 17 22 22 H 1.08995 * 117.50159 * 252.51083 * 21 20 18 23 23 C 1.50702 * 117.49618 * 107.48757 * 21 20 18 24 24 C 1.38680 * 120.41496 * 171.09889 * 23 21 20 25 25 C 1.38624 * 118.41457 * 179.78051 * 24 23 21 26 26 C 1.38226 * 119.16510 * 0.52085 * 25 24 23 27 27 N 1.31851 * 120.76187 * 359.71569 * 26 25 24 28 28 C 1.31884 * 121.72592 * 0.02562 * 27 26 25 29 29 C 1.38303 * 120.14133 * 359.74607 * 13 12 11 30 30 C 1.38099 * 120.06394 * 0.02562 * 29 13 12 31 31 H 0.97002 * 120.00417 * 0.02562 * 1 2 3 32 32 H 1.08004 * 120.03720 * 0.03026 * 11 10 9 33 33 H 1.08007 * 119.96358 * 180.23093 * 12 11 10 34 34 H 1.08997 * 109.46902 * 29.98188 * 14 13 12 35 35 H 1.09002 * 109.46642 * 149.97898 * 14 13 12 36 36 H 0.97001 * 119.99831 * 359.97438 * 17 15 14 37 37 H 1.08999 * 117.49931 * 214.98060 * 20 18 17 38 38 H 1.09004 * 117.50069 * 359.97438 * 20 18 17 39 39 H 1.07999 * 120.78805 * 0.02830 * 24 23 21 40 40 H 1.08006 * 120.41355 * 180.26375 * 25 24 23 41 41 H 1.07997 * 119.61665 * 179.70358 * 26 25 24 42 42 H 1.08001 * 119.61591 * 179.97438 * 28 27 26 43 43 H 1.07996 * 119.96552 * 180.02562 * 29 13 12 44 44 H 1.08007 * 120.03117 * 179.97438 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5470 1.4404 0.7000 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9736 -2.4055 -0.1051 11 6 5.3549 -2.4715 -0.2326 12 6 5.9794 -3.6990 -0.3359 13 6 5.2299 -4.8611 -0.3228 14 6 5.9142 -6.1986 -0.4412 15 6 6.0197 -6.5819 -1.8948 16 8 5.5827 -5.8417 -2.7504 17 7 6.5996 -7.7474 -2.2440 18 6 6.7027 -8.1198 -3.6570 19 1 6.1523 -7.4854 -4.3518 20 6 8.0311 -8.7074 -4.1377 21 6 6.8045 -9.6099 -3.9892 22 1 6.7948 -10.3130 -3.1565 23 6 6.1359 -10.0884 -5.2522 24 6 5.1389 -11.0509 -5.1974 25 6 4.5488 -11.4576 -6.3840 26 6 4.9781 -10.9022 -7.5748 27 7 5.9324 -9.9926 -7.5893 28 6 6.5126 -9.5783 -6.4798 29 6 3.8536 -4.7985 -0.2008 30 6 3.2237 -3.5743 -0.0923 31 1 -0.4851 0.8400 -0.0004 32 1 5.9405 -1.5642 -0.2469 33 1 7.0540 -3.7511 -0.4314 34 1 6.9126 -6.1354 -0.0086 35 1 5.3342 -6.9518 0.0921 36 1 6.9494 -8.3392 -1.5596 37 1 8.3544 -8.4599 -5.1487 38 1 8.8285 -8.8165 -3.4026 39 1 4.8270 -11.4706 -4.2525 40 1 3.7663 -12.2020 -6.3785 41 1 4.5267 -11.2172 -8.5040 42 1 7.2913 -8.8317 -6.5313 43 1 3.2711 -5.7078 -0.1904 44 1 2.1489 -3.5260 0.0025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798270576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:13 Heat of formation + Delta-G solvation = 2.443282 kcal Electronic energy + Delta-G solvation = -26646.115413 eV Core-core repulsion = 22722.046407 eV Total energy + Delta-G solvation = -3924.069006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.45607 -41.05690 -40.44560 -38.66002 -37.98757 -34.54625 -34.44334 -33.32402 -32.82333 -31.80695 -31.39082 -28.45344 -26.82971 -25.40694 -24.50134 -23.72319 -23.39346 -22.19063 -21.80389 -21.27745 -19.82247 -19.11870 -18.41819 -17.84408 -17.73353 -16.94398 -16.76506 -16.37045 -16.10337 -15.91277 -15.70440 -15.53221 -15.26845 -15.11299 -14.87259 -14.75476 -14.35768 -14.21534 -14.07318 -13.96854 -13.73532 -13.12829 -13.04241 -12.87092 -12.65380 -12.52256 -12.49411 -12.39860 -12.30291 -11.93479 -11.72828 -11.28424 -11.00029 -10.85850 -10.70537 -10.41014 -10.11726 -9.78670 -9.47954 -8.98194 -8.51219 -6.23735 0.09194 0.32443 0.58748 0.61646 1.29319 1.34276 1.50547 1.66982 2.12488 2.27089 2.68609 2.77828 3.04333 3.11248 3.18672 3.46864 3.69516 3.75044 3.83109 3.86292 4.00582 4.04187 4.05909 4.09687 4.14388 4.19073 4.39594 4.48861 4.57740 4.59716 4.71214 4.76551 4.82635 4.89719 4.95094 5.00197 5.05644 5.20837 5.25791 5.32323 5.37567 5.53927 5.56761 5.73960 5.76218 5.79529 5.91098 6.25137 6.62284 6.83000 7.00876 7.36558 7.57926 8.60607 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.016302 B = 0.001914 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.117017 B =14626.588685 C =15466.967312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.117 3.883 11 C -0.194 4.194 12 C -0.059 4.059 13 C -0.138 4.138 14 C -0.077 4.077 15 C 0.513 3.487 16 O -0.581 6.581 17 N -0.688 5.688 18 C 0.076 3.924 19 H 0.102 0.898 20 C -0.166 4.166 21 C -0.107 4.107 22 H 0.145 0.855 23 C -0.111 4.111 24 C -0.075 4.075 25 C -0.168 4.168 26 C 0.075 3.925 27 N -0.516 5.516 28 C 0.078 3.922 29 C -0.066 4.066 30 C -0.240 4.240 31 H 0.285 0.715 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.422 0.578 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.159 0.841 40 H 0.163 0.837 41 H 0.173 0.827 42 H 0.159 0.841 43 H 0.133 0.867 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.766 -27.797 -5.414 33.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.214 4.214 12 C -0.077 4.077 13 C -0.139 4.139 14 C -0.116 4.116 15 C 0.302 3.698 16 O -0.459 6.459 17 N -0.340 5.340 18 C -0.030 4.030 19 H 0.120 0.880 20 C -0.205 4.205 21 C -0.127 4.127 22 H 0.163 0.837 23 C -0.113 4.113 24 C -0.101 4.101 25 C -0.188 4.188 26 C -0.082 4.082 27 N -0.225 5.225 28 C -0.078 4.078 29 C -0.084 4.084 30 C -0.259 4.259 31 H 0.094 0.906 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.261 0.739 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.177 0.823 40 H 0.181 0.819 41 H 0.190 0.810 42 H 0.176 0.824 43 H 0.151 0.849 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.610 -26.570 -6.782 33.140 hybrid contribution -0.926 0.326 0.716 1.215 sum 17.684 -26.244 -6.066 32.222 Atomic orbital electron populations 1.69729 1.06886 1.29599 1.50278 1.25313 0.95950 1.02240 0.95557 0.85194 0.78842 0.77301 0.79201 1.19330 1.18875 1.18599 1.20705 0.78179 0.96084 1.52622 0.90379 1.83508 1.21179 1.27476 1.83260 1.19698 0.93322 0.85077 0.95125 1.20526 0.90570 0.99921 1.10334 1.20970 1.00460 0.90208 0.96043 1.19327 0.92771 0.95292 1.06500 1.20563 1.04822 0.94533 0.91716 1.21250 0.76022 0.80472 0.92098 1.90770 1.48796 1.52620 1.53747 1.45210 1.60590 1.21226 1.06929 1.21579 1.02213 0.94666 0.84579 0.88042 1.23744 0.91639 1.00813 1.04259 1.21518 1.01148 0.93157 0.96844 0.83728 1.20277 0.98029 0.98061 0.94941 1.21825 0.93446 0.94702 1.00136 1.22498 1.01591 1.01804 0.92897 1.23237 0.92982 0.92266 0.99707 1.67684 1.09778 1.12896 1.32148 1.22917 0.98585 0.98544 0.87770 1.20926 0.94858 0.96084 0.96495 1.21255 1.00043 0.93423 1.11185 0.90559 0.85428 0.82743 0.84312 0.85263 0.73934 0.87499 0.85340 0.82341 0.81915 0.80983 0.82350 0.84923 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.92 13.96 21.61 0.30 -56.62 16 2 C 0.01 0.45 5.49 84.83 0.47 0.91 16 3 Si 0.97 47.10 28.62 68.60 1.96 49.07 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.40 -24.62 9.95 67.92 0.68 -23.94 16 8 H 0.08 5.05 5.44 -2.91 -0.02 5.04 16 9 O -0.25 -14.08 8.59 -22.78 -0.20 -14.28 16 10 C 0.12 5.79 6.65 22.58 0.15 5.94 16 11 C -0.19 -7.86 9.99 22.39 0.22 -7.64 16 12 C -0.06 -1.87 9.69 22.25 0.22 -1.66 16 13 C -0.14 -4.12 4.38 -19.83 -0.09 -4.21 16 14 C -0.08 -1.33 5.83 29.10 0.17 -1.16 16 15 C 0.51 11.32 7.82 87.66 0.69 12.00 16 16 O -0.58 -20.42 15.60 -3.03 -0.05 -20.47 16 17 N -0.69 -9.03 5.57 -442.53 -2.46 -11.49 16 18 C 0.08 1.15 6.07 44.99 0.27 1.43 16 19 H 0.10 2.38 7.40 -2.39 -0.02 2.36 16 20 C -0.17 -1.50 9.79 30.59 0.30 -1.20 16 21 C -0.11 -1.04 5.99 -11.54 -0.07 -1.11 16 22 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 23 C -0.11 -1.58 5.62 -19.77 -0.11 -1.69 16 24 C -0.08 -0.90 9.89 22.47 0.22 -0.68 16 25 C -0.17 -1.99 10.11 22.36 0.23 -1.77 16 26 C 0.07 1.17 11.18 84.69 0.95 2.11 16 27 N -0.52 -10.74 10.36 -195.85 -2.03 -12.77 16 28 C 0.08 1.40 10.47 84.67 0.89 2.29 16 29 C -0.07 -2.38 9.69 22.25 0.22 -2.17 16 30 C -0.24 -11.23 9.17 22.39 0.21 -11.02 16 31 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16 32 H 0.13 4.77 8.06 -2.91 -0.02 4.74 16 33 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.14 1.31 8.08 -2.39 -0.02 1.29 16 35 H 0.13 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.42 1.86 8.83 -92.71 -0.82 1.04 16 37 H 0.11 0.99 6.20 -2.39 -0.01 0.98 16 38 H 0.13 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 40 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 41 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.16 2.43 6.04 -2.91 -0.02 2.42 16 43 H 0.13 4.03 8.06 -2.91 -0.02 4.00 16 44 H 0.11 5.39 5.64 -2.91 -0.02 5.38 16 Total: -1.00 -85.91 380.46 3.36 -82.55 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.23 Total: 17.56 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 5.59 Total: -33.56 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -4.19 Total: -80.88 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.24 Total: -34.74 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 1.96 Total: 49.07 kcal Total: -85.91 3.36 -82.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798270576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.996 kcal (2) G-P(sol) polarization free energy of solvation -85.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds