Wall clock time and date at job start Tue Mar 31 2020 20:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00457 * 2 1 4 4 H 1.48500 * 109.47049 * 270.00067 * 3 2 1 5 5 H 1.48504 * 109.46918 * 29.99329 * 3 2 1 6 6 H 1.48500 * 109.47437 * 149.99322 * 3 2 1 7 7 C 1.37879 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46986 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.46866 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00392 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.40112 * 119.99742 * 180.02562 * 15 13 12 17 17 C 1.34779 * 119.99742 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99998 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99838 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.46892 * 179.97438 * 19 17 16 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 17 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46854 * 60.00611 * 9 7 2 30 30 H 1.08995 * 109.47483 * 300.00100 * 9 7 2 31 31 H 1.09005 * 109.46544 * 60.00698 * 10 9 7 32 32 H 1.08995 * 109.47261 * 300.00512 * 10 9 7 33 33 H 1.08997 * 109.47251 * 60.00522 * 11 10 9 34 34 H 1.09003 * 109.47185 * 299.99944 * 11 10 9 35 35 H 1.08997 * 109.47025 * 59.99986 * 12 11 10 36 36 H 1.08995 * 109.46939 * 300.00072 * 12 11 10 37 37 H 0.96993 * 120.00233 * 0.02562 * 15 13 12 38 38 H 0.96993 * 120.00020 * 359.97438 * 16 15 13 39 39 H 1.09005 * 109.46403 * 60.00348 * 19 17 16 40 40 H 1.08995 * 109.47035 * 300.00415 * 19 17 16 41 41 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 43 43 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 44 44 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4551 -0.0007 14 8 0.5080 -7.4551 -0.0016 15 7 2.3947 -8.6223 -0.0010 16 7 1.6941 -9.8357 -0.0027 17 6 2.3680 -11.0029 -0.0024 18 8 3.5808 -11.0029 -0.0011 19 6 1.6145 -12.3080 -0.0037 20 8 2.5430 -13.3941 -0.0037 21 6 2.0234 -14.6503 -0.0042 22 6 0.6484 -14.8328 -0.0108 23 6 0.1216 -16.1099 -0.0061 24 6 0.9656 -17.2075 -0.0061 25 9 0.4492 -18.4559 -0.0076 26 6 2.3383 -17.0269 -0.0049 27 6 2.8678 -15.7508 -0.0042 28 1 -0.4851 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8898 30 1 0.6239 -2.5567 0.8902 31 1 2.8717 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 0.8538 -5.0446 -0.8903 34 1 0.8531 -5.0451 0.8897 35 1 3.1003 -6.0924 0.8910 36 1 3.1016 -6.0923 -0.8889 37 1 3.3646 -8.6223 0.0001 38 1 0.7242 -9.8356 -0.0033 39 1 0.9888 -12.3653 -0.8944 40 1 0.9868 -12.3660 0.8856 41 1 -0.0101 -13.9768 -0.0159 42 1 -0.9489 -16.2523 -0.0071 43 1 2.9955 -17.8839 -0.0045 44 1 3.9386 -15.6101 -0.0037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805150568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:19 Heat of formation + Delta-G solvation = -111.620610 kcal Electronic energy + Delta-G solvation = -26413.030688 eV Core-core repulsion = 22053.246275 eV Total energy + Delta-G solvation = -4359.784413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.32801 -41.13568 -40.41089 -39.27231 -37.68790 -35.78363 -34.94106 -32.83826 -32.28595 -31.83567 -30.45012 -29.65702 -28.27355 -25.65178 -23.87000 -23.00750 -22.56644 -21.87365 -20.68061 -20.05926 -19.19411 -18.26017 -18.02325 -17.77582 -17.12851 -17.02282 -16.23532 -16.09668 -16.08889 -15.94516 -15.37390 -15.12591 -15.03541 -14.51445 -14.30162 -14.14124 -14.11659 -13.88812 -13.60166 -13.03305 -12.93794 -12.69737 -12.44805 -11.80069 -11.69094 -11.68213 -11.55420 -11.54335 -11.02659 -10.69673 -10.62113 -10.55615 -10.48007 -10.20581 -9.82459 -9.66787 -9.29539 -9.03235 -8.77952 -8.72853 -8.33127 -5.97986 -4.00584 0.52074 0.59540 1.15839 1.79403 2.44573 2.51768 2.94513 3.32577 3.38884 3.41913 3.50686 3.74244 3.96208 4.10657 4.12154 4.25920 4.29928 4.46999 4.50318 4.65627 4.68266 4.92021 5.15098 5.21383 5.24139 5.37736 5.48637 5.54673 5.55637 5.68353 6.01939 6.03695 6.16264 6.22223 6.27763 6.45761 6.62799 6.75539 6.93276 7.10716 7.15640 7.43198 7.70592 7.85468 8.01115 8.02974 8.44607 9.07043 9.63435 11.13316 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.052244 B = 0.001211 C = 0.001186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.816575 B =23111.254918 C =23610.716275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.516 3.484 14 O -0.533 6.533 15 N -0.528 5.528 16 N -0.519 5.519 17 C 0.515 3.485 18 O -0.516 6.516 19 C 0.051 3.949 20 O -0.285 6.285 21 C 0.121 3.879 22 C -0.182 4.182 23 C -0.111 4.111 24 C 0.060 3.940 25 F -0.140 7.140 26 C -0.112 4.112 27 C -0.117 4.117 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.433 0.567 38 H 0.433 0.567 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -35.906 -0.009 36.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.169 4.169 13 C 0.304 3.696 14 O -0.407 6.407 15 N -0.280 5.280 16 N -0.268 5.268 17 C 0.299 3.701 18 O -0.389 6.389 19 C -0.029 4.029 20 O -0.197 6.197 21 C 0.075 3.925 22 C -0.201 4.201 23 C -0.130 4.130 24 C 0.041 3.959 25 F -0.119 7.119 26 C -0.130 4.130 27 C -0.136 4.136 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.275 0.725 38 H 0.275 0.725 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.816 -35.770 -0.004 35.881 hybrid contribution 0.024 0.714 -0.011 0.715 sum 2.840 -35.056 -0.015 35.171 Atomic orbital electron populations 1.69967 1.06064 1.26544 1.50884 1.25028 0.94825 0.99229 0.95387 0.86616 0.79849 0.83579 0.78073 1.20698 1.21244 1.19896 1.21280 0.93014 0.91178 1.50520 0.92715 1.19096 0.94038 0.91248 0.97343 1.21663 0.99153 0.93738 1.00321 1.21500 0.96937 0.92449 1.03230 1.21799 1.00262 0.89878 1.04947 1.21607 0.88896 0.83951 0.75129 1.90736 1.13899 1.86935 1.49082 1.45313 1.09104 0.95626 1.77907 1.44521 1.09231 0.97038 1.76032 1.20080 0.88507 0.83613 0.77895 1.90802 1.13148 1.86651 1.48295 1.22266 0.91635 0.84123 1.04905 1.86160 1.33633 1.11257 1.88629 1.19030 0.91903 0.84343 0.97187 1.21153 0.93798 0.98191 1.06958 1.20967 1.00599 0.91042 1.00379 1.17620 0.92009 0.79689 1.06593 1.91509 1.87376 1.38779 1.94248 1.21006 0.93458 0.97906 1.00667 1.20324 1.00661 0.89060 1.03533 0.93032 0.96572 0.96549 0.93272 0.93280 0.91546 0.91552 0.88280 0.88290 0.72486 0.72475 0.87981 0.87969 0.84203 0.84191 0.83796 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.28 55.43 0.74 -26.34 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.16 5.15 -26.73 -0.14 -2.30 16 11 C -0.10 -1.67 4.50 -26.73 -0.12 -1.79 16 12 C -0.13 -1.46 5.70 -27.88 -0.16 -1.62 16 13 C 0.52 6.15 7.95 -10.99 -0.09 6.06 16 14 O -0.53 -8.15 15.82 5.56 0.09 -8.06 16 15 N -0.53 -5.06 6.26 31.22 0.20 -4.87 16 16 N -0.52 -4.23 6.26 31.22 0.20 -4.04 16 17 C 0.51 4.32 8.02 -10.98 -0.09 4.23 16 18 O -0.52 -6.41 16.34 -14.36 -0.23 -6.64 16 19 C 0.05 0.25 5.22 36.01 0.19 0.44 16 20 O -0.28 -2.23 9.67 -39.50 -0.38 -2.62 16 21 C 0.12 0.80 6.69 -39.23 -0.26 0.53 16 22 C -0.18 -0.90 9.04 -39.44 -0.36 -1.25 16 23 C -0.11 -0.59 10.02 -39.53 -0.40 -0.99 16 24 C 0.06 0.39 7.30 -39.42 -0.29 0.10 16 25 F -0.14 -1.07 17.27 2.25 0.04 -1.03 16 26 C -0.11 -0.63 10.02 -39.53 -0.40 -1.02 16 27 C -0.12 -0.71 9.99 -39.44 -0.39 -1.11 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.07 1.15 8.10 -51.93 -0.42 0.72 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.43 3.63 8.00 -182.60 -1.46 2.17 16 38 H 0.43 2.85 8.00 -182.60 -1.46 1.39 16 39 H 0.10 0.24 7.65 -51.93 -0.40 -0.16 16 40 H 0.10 0.24 7.67 -51.93 -0.40 -0.16 16 41 H 0.14 0.32 6.30 -52.49 -0.33 -0.01 16 42 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 44 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -36.69 387.79 -9.82 -46.52 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -8.24 Total: -3.49 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -3.05 Total: -11.85 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 1.13 Total: -35.24 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.53 Total: -17.32 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.69 -9.82 -46.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805150568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.104 kcal (2) G-P(sol) polarization free energy of solvation -36.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds