Wall clock time and date at job start Tue Mar 31 2020 20:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00457 * 2 1 4 4 H 1.48500 * 109.47049 * 270.00067 * 3 2 1 5 5 H 1.48504 * 109.46918 * 29.99329 * 3 2 1 6 6 H 1.48500 * 109.47437 * 149.99322 * 3 2 1 7 7 C 1.37879 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00010 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99912 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47097 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46986 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46983 * 180.02562 * 11 10 9 13 13 C 1.50692 * 109.46866 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00392 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.40112 * 119.99742 * 180.02562 * 15 13 12 17 17 C 1.34779 * 119.99742 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99998 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99838 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.46892 * 179.97438 * 19 17 16 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 17 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 0.97003 * 120.00374 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46854 * 60.00611 * 9 7 2 30 30 H 1.08995 * 109.47483 * 300.00100 * 9 7 2 31 31 H 1.09005 * 109.46544 * 60.00698 * 10 9 7 32 32 H 1.08995 * 109.47261 * 300.00512 * 10 9 7 33 33 H 1.08997 * 109.47251 * 60.00522 * 11 10 9 34 34 H 1.09003 * 109.47185 * 299.99944 * 11 10 9 35 35 H 1.08997 * 109.47025 * 59.99986 * 12 11 10 36 36 H 1.08995 * 109.46939 * 300.00072 * 12 11 10 37 37 H 0.96993 * 120.00233 * 0.02562 * 15 13 12 38 38 H 0.96993 * 120.00020 * 359.97438 * 16 15 13 39 39 H 1.09005 * 109.46403 * 60.00348 * 19 17 16 40 40 H 1.08995 * 109.47035 * 300.00415 * 19 17 16 41 41 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 43 43 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 44 44 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7002 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 -0.0001 12 6 2.4743 -6.1501 0.0005 13 6 1.7208 -7.4551 -0.0007 14 8 0.5080 -7.4551 -0.0016 15 7 2.3947 -8.6223 -0.0010 16 7 1.6941 -9.8357 -0.0027 17 6 2.3680 -11.0029 -0.0024 18 8 3.5808 -11.0029 -0.0011 19 6 1.6145 -12.3080 -0.0037 20 8 2.5430 -13.3941 -0.0037 21 6 2.0234 -14.6503 -0.0042 22 6 0.6484 -14.8328 -0.0108 23 6 0.1216 -16.1099 -0.0061 24 6 0.9656 -17.2075 -0.0061 25 9 0.4492 -18.4559 -0.0076 26 6 2.3383 -17.0269 -0.0049 27 6 2.8678 -15.7508 -0.0042 28 1 -0.4851 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8898 30 1 0.6239 -2.5567 0.8902 31 1 2.8717 -3.6044 0.8906 32 1 2.8719 -3.6044 -0.8894 33 1 0.8538 -5.0446 -0.8903 34 1 0.8531 -5.0451 0.8897 35 1 3.1003 -6.0924 0.8910 36 1 3.1016 -6.0923 -0.8889 37 1 3.3646 -8.6223 0.0001 38 1 0.7242 -9.8356 -0.0033 39 1 0.9888 -12.3653 -0.8944 40 1 0.9868 -12.3660 0.8856 41 1 -0.0101 -13.9768 -0.0159 42 1 -0.9489 -16.2523 -0.0071 43 1 2.9955 -17.8839 -0.0045 44 1 3.9386 -15.6101 -0.0037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805150568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:18 Heat of formation + Delta-G solvation = -135.699028 kcal Electronic energy + Delta-G solvation = -26414.074807 eV Core-core repulsion = 22053.246275 eV Total energy + Delta-G solvation = -4360.828531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.83287 -41.74538 -41.07978 -40.06836 -38.16100 -36.82179 -36.33427 -34.62828 -33.19162 -32.29131 -31.42321 -30.64482 -28.91443 -27.29102 -24.51709 -24.09356 -23.32441 -22.60420 -21.90676 -21.36443 -19.64970 -19.01069 -18.66695 -18.39587 -18.28291 -17.62337 -17.61420 -16.98358 -16.88751 -16.54348 -16.49108 -15.89364 -15.88509 -15.62639 -15.31499 -15.16925 -14.70327 -14.52601 -14.34976 -14.01043 -13.86570 -13.60614 -13.41267 -13.38939 -13.29946 -12.83245 -12.51666 -12.34493 -12.14732 -12.12280 -12.00172 -11.94556 -11.48405 -11.33966 -11.33620 -11.19238 -10.91735 -10.52736 -10.20267 -9.55994 -9.17774 -8.17197 -6.28673 0.13949 0.16525 0.50340 1.10350 1.42021 1.43456 1.54522 1.58859 2.01914 2.43238 2.54003 2.91458 3.16073 3.31000 3.35971 3.68401 3.79685 3.81530 3.98475 4.03831 4.04714 4.16207 4.17076 4.30313 4.54406 4.63427 4.69784 4.85859 4.89542 4.89795 5.10343 5.13643 5.17102 5.21756 5.34592 5.38478 5.47456 5.54919 5.60360 5.68282 5.81965 5.91307 6.20503 6.28016 6.38265 6.73308 6.90173 7.20257 7.41036 8.94836 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.052244 B = 0.001211 C = 0.001186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.816575 B =23111.254918 C =23610.716275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.098 4.098 11 C -0.095 4.095 12 C -0.119 4.119 13 C 0.521 3.479 14 O -0.572 6.572 15 N -0.521 5.521 16 N -0.515 5.515 17 C 0.517 3.483 18 O -0.560 6.560 19 C 0.049 3.951 20 O -0.311 6.311 21 C 0.110 3.890 22 C -0.177 4.177 23 C -0.113 4.113 24 C 0.039 3.961 25 F -0.151 7.151 26 C -0.113 4.113 27 C -0.131 4.131 28 H 0.262 0.738 29 H -0.014 1.014 30 H -0.013 1.013 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.440 0.560 38 H 0.441 0.559 39 H 0.135 0.865 40 H 0.135 0.865 41 H 0.170 0.830 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 -36.352 -0.013 36.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.136 4.136 11 C -0.133 4.133 12 C -0.160 4.160 13 C 0.309 3.691 14 O -0.449 6.449 15 N -0.271 5.271 16 N -0.264 5.264 17 C 0.304 3.696 18 O -0.436 6.436 19 C -0.030 4.030 20 O -0.224 6.224 21 C 0.065 3.935 22 C -0.196 4.196 23 C -0.131 4.131 24 C 0.020 3.980 25 F -0.130 7.130 26 C -0.132 4.132 27 C -0.149 4.149 28 H 0.071 0.929 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.284 0.716 38 H 0.285 0.715 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.188 0.812 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.874 -36.244 -0.009 36.451 hybrid contribution -0.325 0.813 -0.010 0.876 sum 3.549 -35.431 -0.020 35.608 Atomic orbital electron populations 1.70116 1.07976 1.27674 1.51954 1.26025 0.95722 1.03520 0.94832 0.85442 0.78731 0.78367 0.78472 1.19808 1.21000 1.18423 1.21780 0.93755 0.92359 1.50149 0.91681 1.19062 0.94718 0.93649 0.94479 1.21462 0.97882 0.92755 1.01463 1.21263 0.97378 0.93050 1.01647 1.21657 0.99103 0.87677 1.07575 1.21510 0.88231 0.84649 0.74661 1.90730 1.15494 1.87476 1.51227 1.45117 1.09499 0.95921 1.76539 1.44658 1.09668 0.96411 1.75680 1.20748 0.88116 0.84433 0.76333 1.90785 1.15187 1.87251 1.50408 1.22519 0.90961 0.81500 1.07987 1.86110 1.35203 1.12071 1.88987 1.19193 0.92729 0.83912 0.97680 1.21439 0.93432 0.98981 1.05714 1.21231 1.01461 0.90841 0.99609 1.17914 0.92658 0.79707 1.07742 1.91479 1.87525 1.39517 1.94468 1.21155 0.93529 0.98278 1.00212 1.20481 1.01071 0.89365 1.04000 0.92902 0.99529 0.99503 0.92017 0.92008 0.93248 0.93252 0.85640 0.85648 0.71621 0.71472 0.84743 0.84737 0.81244 0.82461 0.82497 0.83477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.28 21.45 0.28 -57.58 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 0.96 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.74 5.15 30.60 0.16 -3.59 16 11 C -0.10 -3.05 4.50 30.60 0.14 -2.91 16 12 C -0.12 -2.46 5.70 29.85 0.17 -2.29 16 13 C 0.52 11.62 7.95 87.65 0.70 12.32 16 14 O -0.57 -17.17 15.82 -3.04 -0.05 -17.22 16 15 N -0.52 -9.02 6.26 -173.53 -1.09 -10.11 16 16 N -0.51 -7.41 6.26 -173.53 -1.09 -8.49 16 17 C 0.52 7.76 8.02 87.66 0.70 8.47 16 18 O -0.56 -13.41 16.34 16.00 0.26 -13.15 16 19 C 0.05 0.36 5.22 71.24 0.37 0.73 16 20 O -0.31 -4.39 9.67 -73.96 -0.72 -5.11 16 21 C 0.11 1.29 6.69 22.50 0.15 1.44 16 22 C -0.18 -1.30 9.04 22.36 0.20 -1.10 16 23 C -0.11 -1.00 10.02 22.30 0.22 -0.78 16 24 C 0.04 0.48 7.30 22.37 0.16 0.64 16 25 F -0.15 -2.26 17.27 44.97 0.78 -1.48 16 26 C -0.11 -1.21 10.02 22.30 0.22 -0.99 16 27 C -0.13 -1.53 9.99 22.36 0.22 -1.30 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 34 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.13 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.44 6.50 8.00 -213.32 -1.71 4.80 16 38 H 0.44 4.91 8.00 -213.32 -1.71 3.20 16 39 H 0.14 0.12 7.65 -2.38 -0.02 0.10 16 40 H 0.14 0.12 7.67 -2.39 -0.02 0.10 16 41 H 0.17 0.10 6.30 -2.91 -0.02 0.08 16 42 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -82.24 387.79 2.31 -79.92 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -2.37 Total: 5.65 kcal Atomic # 6 Polarization: -22.84 SS G_CDS: 4.27 Total: -18.57 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -1.89 Total: -76.19 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.50 Total: -35.48 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -82.24 2.31 -79.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805150568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.775 kcal (2) G-P(sol) polarization free energy of solvation -82.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds