Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00137 * 2 1 4 4 H 1.48504 * 109.47470 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47406 * 300.00602 * 3 2 1 6 6 H 1.48502 * 109.47104 * 60.00400 * 3 2 1 7 7 C 1.37886 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99552 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47318 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47294 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47526 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99883 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00282 * 179.97438 * 13 12 11 16 16 N 1.40103 * 119.99965 * 180.02562 * 15 13 12 17 17 C 1.34775 * 119.99970 * 180.02562 * 16 15 13 18 18 O 1.21279 * 120.00113 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00139 * 180.02562 * 17 16 15 20 20 O 1.42893 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 17 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 0.96993 * 119.99978 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47712 * 59.99909 * 9 7 2 30 30 H 1.09009 * 109.46775 * 299.99757 * 9 7 2 31 31 H 1.09004 * 109.46911 * 59.99637 * 10 9 7 32 32 H 1.08998 * 109.46650 * 299.99765 * 10 9 7 33 33 H 1.08996 * 109.47392 * 59.99785 * 11 10 9 34 34 H 1.09001 * 109.46980 * 300.00069 * 11 10 9 35 35 H 1.09007 * 109.47421 * 59.99909 * 12 11 10 36 36 H 1.09001 * 109.47165 * 299.99958 * 12 11 10 37 37 H 0.97000 * 119.99831 * 0.02562 * 15 13 12 38 38 H 0.97000 * 120.00204 * 359.97438 * 16 15 13 39 39 H 1.08994 * 109.46839 * 59.99224 * 19 17 16 40 40 H 1.09001 * 109.46752 * 299.99815 * 19 17 16 41 41 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 42 42 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 43 43 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4745 -6.1500 -0.0005 13 6 1.7211 -7.4551 0.0007 14 8 0.5082 -7.4552 0.0025 15 7 2.3950 -8.6223 -0.0001 16 7 1.6945 -9.8357 0.0006 17 6 2.3683 -11.0028 0.0003 18 8 3.5811 -11.0029 -0.0010 19 6 1.6148 -12.3080 0.0004 20 8 2.5434 -13.3941 -0.0006 21 6 2.0238 -14.6504 -0.0001 22 6 0.6494 -14.8336 0.0018 23 6 0.1233 -16.1114 0.0029 24 6 0.9656 -17.2079 0.0014 25 6 2.3365 -17.0298 -0.0005 26 6 2.8688 -15.7530 -0.0015 27 9 4.2085 -15.5785 -0.0039 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5568 -0.8902 30 1 0.6247 -2.5571 0.8898 31 1 2.8720 -3.6044 0.8895 32 1 2.8719 -3.6044 -0.8905 33 1 0.8534 -5.0452 -0.8896 34 1 0.8540 -5.0446 0.8903 35 1 3.1019 -6.0923 0.8890 36 1 3.1005 -6.0924 -0.8910 37 1 3.3650 -8.6223 -0.0011 38 1 0.7245 -9.8357 0.0020 39 1 0.9879 -12.3656 -0.8893 40 1 0.9885 -12.3658 0.8906 41 1 -0.0097 -13.9780 0.0023 42 1 -0.9473 -16.2538 -0.0001 43 1 0.5516 -18.2054 0.0027 44 1 2.9923 -17.8879 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805152666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = -109.769423 kcal Electronic energy + Delta-G solvation = -26704.785920 eV Core-core repulsion = 22345.081781 eV Total energy + Delta-G solvation = -4359.704139 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.19848 -41.07597 -40.34812 -39.25346 -37.87866 -35.76690 -34.92926 -32.82501 -32.22788 -31.31033 -30.80520 -29.72295 -28.34475 -25.64761 -23.65510 -23.07785 -22.59861 -21.85359 -20.65272 -20.04806 -19.26863 -18.23473 -17.89521 -17.53023 -17.20526 -17.01992 -16.23194 -16.12797 -16.08281 -15.79574 -15.60432 -15.08240 -14.89075 -14.87764 -14.49240 -14.11281 -14.07746 -13.67796 -13.29580 -12.96427 -12.69318 -12.44148 -12.33964 -11.86713 -11.82164 -11.79366 -11.67454 -11.57902 -11.03086 -10.67758 -10.61610 -10.52672 -10.47425 -10.18854 -9.66073 -9.56897 -9.28895 -9.01324 -8.83204 -8.74244 -8.32833 -5.97575 -4.00003 0.51241 0.63086 1.16388 1.81864 2.46292 2.47043 2.96575 3.32114 3.39592 3.43486 3.49775 3.68135 4.00019 4.13637 4.20372 4.29923 4.30739 4.47591 4.57024 4.62888 4.68044 4.85148 5.16613 5.22801 5.31514 5.38215 5.42993 5.56358 5.69779 5.76671 5.95578 6.04839 6.17589 6.24211 6.29778 6.46934 6.60582 6.76593 6.94346 7.12453 7.16785 7.45638 7.71563 7.86181 8.02712 8.03865 8.45309 9.07874 9.64019 11.13778 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.044030 B = 0.001291 C = 0.001256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.779496 B =21683.566488 C =22282.993525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.128 4.128 13 C 0.516 3.484 14 O -0.533 6.533 15 N -0.528 5.528 16 N -0.519 5.519 17 C 0.514 3.486 18 O -0.513 6.513 19 C 0.051 3.949 20 O -0.281 6.281 21 C 0.096 3.904 22 C -0.184 4.184 23 C -0.088 4.088 24 C -0.127 4.127 25 C -0.116 4.116 26 C 0.075 3.925 27 F -0.129 7.129 28 H 0.259 0.741 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.433 0.567 38 H 0.433 0.567 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 -37.527 0.002 37.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.169 4.169 13 C 0.304 3.696 14 O -0.407 6.407 15 N -0.279 5.279 16 N -0.268 5.268 17 C 0.298 3.702 18 O -0.386 6.386 19 C -0.029 4.029 20 O -0.193 6.193 21 C 0.050 3.950 22 C -0.203 4.203 23 C -0.107 4.107 24 C -0.146 4.146 25 C -0.135 4.135 26 C 0.055 3.945 27 F -0.107 7.107 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.275 0.725 38 H 0.275 0.725 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.811 -37.335 0.001 37.344 hybrid contribution 0.385 0.984 0.001 1.057 sum 1.197 -36.351 0.002 36.371 Atomic orbital electron populations 1.69978 1.06058 1.26424 1.51003 1.25035 0.94830 0.99244 0.95409 0.86559 0.80119 0.83903 0.77553 1.19746 1.21054 1.21049 1.21321 0.93057 0.91162 1.50347 0.92652 1.19104 0.94048 0.91268 0.97351 1.21662 0.99151 0.93736 1.00330 1.21494 0.96934 0.92448 1.03224 1.21800 1.00262 0.89874 1.04957 1.21605 0.88893 0.83946 0.75131 1.90735 1.13892 1.86945 1.49132 1.45311 1.09121 0.95619 1.77867 1.44505 1.09196 0.97008 1.76128 1.20058 0.88522 0.83595 0.77985 1.90814 1.13133 1.86599 1.48087 1.22280 0.91589 0.84057 1.04926 1.86201 1.33474 1.10947 1.88686 1.19041 0.92259 0.83860 0.99878 1.21222 0.92516 0.99515 1.07008 1.21066 1.00569 0.91467 0.97569 1.20996 0.92196 0.99709 1.01660 1.21087 0.96615 0.94841 1.00930 1.17025 0.77238 0.91880 1.08397 1.91546 1.28986 1.96106 1.94072 0.93095 0.96546 0.96556 0.93276 0.93272 0.91557 0.91548 0.88287 0.88280 0.72475 0.72487 0.87911 0.87909 0.84225 0.84731 0.84632 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 11 C -0.10 -1.69 4.50 -26.74 -0.12 -1.81 16 12 C -0.13 -1.50 5.70 -27.89 -0.16 -1.66 16 13 C 0.52 6.33 7.95 -10.99 -0.09 6.24 16 14 O -0.53 -8.30 15.82 5.55 0.09 -8.21 16 15 N -0.53 -5.32 6.26 31.22 0.20 -5.13 16 16 N -0.52 -4.52 6.26 31.22 0.20 -4.32 16 17 C 0.51 4.76 8.02 -10.98 -0.09 4.67 16 18 O -0.51 -6.96 16.34 -14.35 -0.23 -7.19 16 19 C 0.05 0.30 5.22 36.01 0.19 0.49 16 20 O -0.28 -2.71 9.53 -39.51 -0.38 -3.09 16 21 C 0.10 0.77 6.69 -39.18 -0.26 0.51 16 22 C -0.18 -0.92 9.04 -39.45 -0.36 -1.27 16 23 C -0.09 -0.35 10.04 -39.59 -0.40 -0.75 16 24 C -0.13 -0.52 10.04 -39.57 -0.40 -0.92 16 25 C -0.12 -0.66 10.02 -39.54 -0.40 -1.06 16 26 C 0.07 0.64 7.31 -39.30 -0.29 0.35 16 27 F -0.13 -1.41 17.11 2.25 0.04 -1.37 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 34 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.43 3.88 8.00 -182.60 -1.46 2.41 16 38 H 0.43 3.02 8.00 -182.60 -1.46 1.56 16 39 H 0.10 0.30 7.66 -51.93 -0.40 -0.10 16 40 H 0.10 0.30 7.66 -51.93 -0.40 -0.10 16 41 H 0.14 0.33 6.30 -52.48 -0.33 0.00 16 42 H 0.13 0.21 8.06 -52.49 -0.42 -0.22 16 43 H 0.14 0.22 8.06 -52.49 -0.42 -0.20 16 44 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -37.82 387.60 -9.82 -47.64 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -8.24 Total: -3.69 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -3.05 Total: -10.73 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 1.13 Total: -35.88 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.52 Total: -18.50 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.82 -9.82 -47.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805152666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.129 kcal (2) G-P(sol) polarization free energy of solvation -37.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds