Wall clock time and date at job start Tue Mar 31 2020 20:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00137 * 2 1 4 4 H 1.48504 * 109.47470 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47406 * 300.00602 * 3 2 1 6 6 H 1.48502 * 109.47104 * 60.00400 * 3 2 1 7 7 C 1.37886 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00149 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99552 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47054 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47318 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47294 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47526 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99883 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00282 * 179.97438 * 13 12 11 16 16 N 1.40103 * 119.99965 * 180.02562 * 15 13 12 17 17 C 1.34775 * 119.99970 * 180.02562 * 16 15 13 18 18 O 1.21279 * 120.00113 * 359.97438 * 17 16 15 19 19 C 1.50706 * 120.00139 * 180.02562 * 17 16 15 20 20 O 1.42893 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.35956 * 117.00026 * 179.97438 * 20 19 17 22 22 C 1.38657 * 120.06128 * 359.97438 * 21 20 19 23 23 C 1.38184 * 119.96964 * 180.02562 * 22 21 20 24 24 C 1.38265 * 120.09281 * 359.97438 * 23 22 21 25 25 C 1.38248 * 120.12705 * 0.02562 * 24 23 22 26 26 C 1.38332 * 120.03366 * 359.97438 * 25 24 23 27 27 F 1.35103 * 120.05240 * 180.02562 * 26 25 24 28 28 H 0.96993 * 119.99978 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47712 * 59.99909 * 9 7 2 30 30 H 1.09009 * 109.46775 * 299.99757 * 9 7 2 31 31 H 1.09004 * 109.46911 * 59.99637 * 10 9 7 32 32 H 1.08998 * 109.46650 * 299.99765 * 10 9 7 33 33 H 1.08996 * 109.47392 * 59.99785 * 11 10 9 34 34 H 1.09001 * 109.46980 * 300.00069 * 11 10 9 35 35 H 1.09007 * 109.47421 * 59.99909 * 12 11 10 36 36 H 1.09001 * 109.47165 * 299.99958 * 12 11 10 37 37 H 0.97000 * 119.99831 * 0.02562 * 15 13 12 38 38 H 0.97000 * 120.00204 * 359.97438 * 16 15 13 39 39 H 1.08994 * 109.46839 * 59.99224 * 19 17 16 40 40 H 1.09001 * 109.46752 * 299.99815 * 19 17 16 41 41 H 1.08004 * 120.01774 * 0.03769 * 22 21 20 42 42 H 1.08000 * 119.95526 * 180.27319 * 23 22 21 43 43 H 1.08001 * 119.93128 * 179.97438 * 24 23 22 44 44 H 1.07998 * 119.98480 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4745 -6.1500 -0.0005 13 6 1.7211 -7.4551 0.0007 14 8 0.5082 -7.4552 0.0025 15 7 2.3950 -8.6223 -0.0001 16 7 1.6945 -9.8357 0.0006 17 6 2.3683 -11.0028 0.0003 18 8 3.5811 -11.0029 -0.0010 19 6 1.6148 -12.3080 0.0004 20 8 2.5434 -13.3941 -0.0006 21 6 2.0238 -14.6504 -0.0001 22 6 0.6494 -14.8336 0.0018 23 6 0.1233 -16.1114 0.0029 24 6 0.9656 -17.2079 0.0014 25 6 2.3365 -17.0298 -0.0005 26 6 2.8688 -15.7530 -0.0015 27 9 4.2085 -15.5785 -0.0039 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5568 -0.8902 30 1 0.6247 -2.5571 0.8898 31 1 2.8720 -3.6044 0.8895 32 1 2.8719 -3.6044 -0.8905 33 1 0.8534 -5.0452 -0.8896 34 1 0.8540 -5.0446 0.8903 35 1 3.1019 -6.0923 0.8890 36 1 3.1005 -6.0924 -0.8910 37 1 3.3650 -8.6223 -0.0011 38 1 0.7245 -9.8357 0.0020 39 1 0.9879 -12.3656 -0.8893 40 1 0.9885 -12.3658 0.8906 41 1 -0.0097 -13.9780 0.0023 42 1 -0.9473 -16.2538 -0.0001 43 1 0.5516 -18.2054 0.0027 44 1 2.9923 -17.8879 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805152666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:22 Heat of formation + Delta-G solvation = -135.387506 kcal Electronic energy + Delta-G solvation = -26705.896804 eV Core-core repulsion = 22345.081781 eV Total energy + Delta-G solvation = -4360.815023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.85296 -41.76326 -41.04145 -40.07719 -38.36363 -36.84791 -36.35973 -34.63660 -33.21903 -31.70660 -31.55397 -30.95000 -29.03793 -27.31222 -24.50373 -23.88134 -23.46381 -22.64239 -21.91796 -21.37564 -19.78168 -19.05427 -18.63799 -18.38548 -18.04065 -17.75092 -17.63047 -17.05152 -16.94857 -16.58341 -16.49597 -16.05095 -15.81348 -15.65125 -15.35119 -15.27966 -15.14647 -14.54101 -14.20990 -13.87293 -13.74821 -13.60579 -13.37422 -13.31436 -12.86566 -12.69178 -12.56242 -12.32408 -12.22094 -12.18462 -12.15059 -12.14155 -11.52954 -11.36372 -11.34977 -11.19647 -10.93111 -10.53935 -9.95237 -9.59423 -9.28220 -8.17901 -6.29226 0.12192 0.23772 0.45972 1.06255 1.41541 1.41630 1.55165 1.55969 1.93507 2.42639 2.60050 2.85019 3.15371 3.24311 3.31214 3.73984 3.79281 3.87928 3.98315 4.00007 4.03052 4.15791 4.27512 4.33655 4.49053 4.62033 4.68506 4.84489 4.88959 4.95888 5.08497 5.20768 5.25990 5.33367 5.36865 5.43467 5.45033 5.51663 5.59719 5.68334 5.81202 5.90705 6.15799 6.27448 6.34725 6.70020 6.89700 7.17212 7.40426 8.94352 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.044030 B = 0.001291 C = 0.001256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.779496 B =21683.566488 C =22282.993525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.098 4.098 11 C -0.095 4.095 12 C -0.120 4.120 13 C 0.521 3.479 14 O -0.571 6.571 15 N -0.521 5.521 16 N -0.512 5.512 17 C 0.516 3.484 18 O -0.562 6.562 19 C 0.051 3.949 20 O -0.318 6.318 21 C 0.076 3.924 22 C -0.181 4.181 23 C -0.083 4.083 24 C -0.124 4.124 25 C -0.119 4.119 26 C 0.029 3.971 27 F -0.155 7.155 28 H 0.262 0.738 29 H -0.013 1.013 30 H -0.013 1.013 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.439 0.561 38 H 0.442 0.558 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.169 0.831 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.500 -38.726 0.004 38.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.136 4.136 11 C -0.133 4.133 12 C -0.160 4.160 13 C 0.310 3.690 14 O -0.448 6.448 15 N -0.271 5.271 16 N -0.262 5.262 17 C 0.302 3.698 18 O -0.438 6.438 19 C -0.028 4.028 20 O -0.232 6.232 21 C 0.030 3.970 22 C -0.200 4.200 23 C -0.101 4.101 24 C -0.142 4.142 25 C -0.138 4.138 26 C 0.010 3.990 27 F -0.134 7.134 28 H 0.071 0.929 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.283 0.717 38 H 0.286 0.714 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.186 0.814 42 H 0.184 0.816 43 H 0.182 0.818 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.625 -38.560 0.002 38.565 hybrid contribution 0.352 1.273 0.001 1.321 sum 0.977 -37.287 0.003 37.300 Atomic orbital electron populations 1.70122 1.07956 1.27615 1.52013 1.26030 0.95736 1.03525 0.94848 0.85386 0.79228 0.78703 0.77646 1.18236 1.20542 1.20532 1.21806 0.93747 0.92352 1.50037 0.91710 1.19068 0.94716 0.93632 0.94522 1.21462 0.97897 0.92771 1.01451 1.21258 0.97352 0.92994 1.01691 1.21664 0.99138 0.87673 1.07561 1.21523 0.88250 0.84592 0.74637 1.90728 1.15427 1.87462 1.51205 1.45140 1.09511 0.95909 1.76573 1.44618 1.09643 0.96342 1.75613 1.20754 0.88098 0.84519 0.76399 1.90793 1.15365 1.87259 1.50423 1.22542 0.90823 0.81277 1.08121 1.86127 1.35585 1.12154 1.89308 1.19281 0.93494 0.83016 1.01176 1.21591 0.91346 1.01219 1.05822 1.21533 1.02182 0.90829 0.95587 1.21409 0.91344 1.01375 1.00115 1.21341 0.97864 0.94105 1.00469 1.17613 0.76480 0.93638 1.11301 1.91461 1.30948 1.96362 1.94635 0.92893 0.99462 0.99474 0.92039 0.92032 0.93201 0.93195 0.85674 0.85665 0.71683 0.71368 0.84521 0.84513 0.81355 0.81566 0.81802 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 13.29 21.45 0.28 -57.76 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -30.92 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 0.95 4.97 29.85 0.15 1.09 16 10 C -0.10 -3.80 5.15 30.59 0.16 -3.65 16 11 C -0.09 -3.09 4.50 30.59 0.14 -2.95 16 12 C -0.12 -2.57 5.70 29.85 0.17 -2.40 16 13 C 0.52 12.13 7.95 87.66 0.70 12.83 16 14 O -0.57 -17.53 15.82 -3.05 -0.05 -17.58 16 15 N -0.52 -9.79 6.26 -173.53 -1.09 -10.88 16 16 N -0.51 -8.21 6.26 -173.53 -1.09 -9.29 16 17 C 0.52 9.10 8.02 87.66 0.70 9.80 16 18 O -0.56 -15.40 16.34 16.01 0.26 -15.13 16 19 C 0.05 0.51 5.22 71.24 0.37 0.88 16 20 O -0.32 -6.14 9.53 -74.02 -0.71 -6.84 16 21 C 0.08 1.19 6.69 22.53 0.15 1.34 16 22 C -0.18 -1.34 9.04 22.36 0.20 -1.13 16 23 C -0.08 -0.37 10.04 22.26 0.22 -0.15 16 24 C -0.12 -0.70 10.04 22.28 0.22 -0.47 16 25 C -0.12 -1.29 10.02 22.29 0.22 -1.07 16 26 C 0.03 0.53 7.31 22.45 0.16 0.69 16 27 F -0.16 -3.77 17.11 44.97 0.77 -3.00 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H -0.01 -0.77 8.14 -2.38 -0.02 -0.78 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.44 7.27 8.00 -213.32 -1.71 5.56 16 38 H 0.44 5.42 8.00 -213.32 -1.71 3.71 16 39 H 0.14 0.40 7.66 -2.39 -0.02 0.38 16 40 H 0.14 0.40 7.66 -2.39 -0.02 0.38 16 41 H 0.17 0.11 6.30 -2.91 -0.02 0.09 16 42 H 0.17 -0.30 8.06 -2.91 -0.02 -0.33 16 43 H 0.16 -0.06 8.06 -2.91 -0.02 -0.08 16 44 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -86.97 387.60 2.32 -84.65 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -2.37 Total: 5.03 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 4.27 Total: -15.65 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -1.89 Total: -77.93 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.49 Total: -39.55 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.77 Total: -3.00 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -86.97 2.32 -84.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805152666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.733 kcal (2) G-P(sol) polarization free energy of solvation -86.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds