Wall clock time and date at job start Tue Mar 31 2020 20:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 119.99813 * 2 1 4 4 H 1.48502 * 109.47120 * 270.00232 * 3 2 1 5 5 H 1.48496 * 109.47151 * 30.00142 * 3 2 1 6 6 H 1.48498 * 109.47130 * 150.00414 * 3 2 1 7 7 C 1.38656 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99868 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00027 * 185.06069 * 9 7 2 11 11 C 1.38903 * 120.06995 * 354.48905 * 10 9 7 12 12 C 1.38081 * 119.93350 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06367 * 359.74080 * 12 11 10 14 14 C 1.38271 * 120.14098 * 0.51210 * 13 12 11 15 15 C 1.50707 * 119.96853 * 179.76705 * 14 13 12 16 16 C 1.50698 * 109.46859 * 269.72552 * 15 14 13 17 17 O 1.21286 * 120.00254 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00034 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00422 * 180.02562 * 18 16 15 20 20 H 1.09000 * 115.55941 * 350.69219 * 19 18 16 21 21 C 1.53001 * 117.50055 * 136.38027 * 19 18 16 22 22 C 1.53000 * 117.49991 * 205.00324 * 19 18 16 23 23 H 1.08995 * 117.51822 * 359.97438 * 22 19 18 24 24 C 1.50706 * 117.50028 * 145.01825 * 22 19 18 25 25 C 1.38668 * 120.42041 * 240.01594 * 24 22 19 26 26 C 1.38627 * 118.41868 * 179.75009 * 25 24 22 27 27 C 1.38229 * 119.16267 * 0.24819 * 26 25 24 28 28 N 1.31847 * 120.76103 * 0.02562 * 27 26 25 29 29 C 1.31883 * 121.73002 * 359.97323 * 28 27 26 30 30 C 1.38122 * 120.07271 * 359.48854 * 14 13 12 31 31 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.03336 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.96501 * 179.97438 * 12 11 10 34 34 H 1.08000 * 119.92949 * 180.27893 * 13 12 11 35 35 H 1.08995 * 109.47321 * 149.72356 * 15 14 13 36 36 H 1.09002 * 109.46797 * 29.72080 * 15 14 13 37 37 H 0.97007 * 119.99591 * 0.02562 * 18 16 15 38 38 H 1.08997 * 117.49879 * 359.97438 * 21 19 18 39 39 H 1.08997 * 117.51668 * 214.97019 * 21 19 18 40 40 H 1.08000 * 120.79088 * 0.02580 * 25 24 22 41 41 H 1.08002 * 120.41808 * 180.23319 * 26 25 24 42 42 H 1.08005 * 119.61691 * 180.02562 * 27 26 25 43 43 H 1.08004 * 119.61945 * 179.97438 * 29 28 27 44 44 H 1.07996 * 120.04226 * 180.22703 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4402 0.6999 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4575 -3.4394 0.0927 12 6 4.2027 -4.5968 0.2014 13 6 3.5689 -5.8197 0.3284 14 6 2.1879 -5.8884 0.3364 15 6 1.5013 -7.2234 0.4697 16 6 1.2654 -7.8058 -0.9000 17 8 1.6193 -7.1967 -1.8873 18 7 0.6609 -9.0037 -1.0279 19 6 0.4320 -9.5702 -2.3594 20 1 0.6319 -8.9008 -3.1960 21 6 0.7351 -11.0569 -2.5562 22 6 -0.7150 -10.5709 -2.5137 23 1 -1.2993 -10.8082 -1.6246 24 6 -1.4822 -10.5556 -3.8108 25 6 -2.8448 -10.2987 -3.8176 26 6 -3.5084 -10.2895 -5.0347 27 6 -2.7957 -10.5400 -6.1923 28 7 -1.5011 -10.7860 -6.1473 29 6 -0.8375 -10.8027 -5.0078 30 6 1.4368 -4.7343 0.2280 31 1 -0.4850 0.8400 0.0004 32 1 3.9529 -2.4845 -0.0022 33 1 5.2815 -4.5467 0.1910 34 1 4.1539 -6.7231 0.4178 35 1 0.5462 -7.0916 0.9780 36 1 2.1308 -7.8994 1.0485 37 1 0.3775 -9.4907 -0.2383 38 1 1.1052 -11.6134 -1.6952 39 1 1.1341 -11.3659 -3.5223 40 1 -3.3757 -10.1059 -2.8971 41 1 -4.5688 -10.0893 -5.0779 42 1 -3.3052 -10.5343 -7.1446 43 1 0.2228 -11.0085 -5.0105 44 1 0.3582 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807992171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:37 Heat of formation + Delta-G solvation = 24.562773 kcal Electronic energy + Delta-G solvation = -26774.375926 eV Core-core repulsion = 22851.266093 eV Total energy + Delta-G solvation = -3923.109833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.76476 -39.85186 -38.84236 -37.61962 -36.36779 -33.59542 -32.65416 -32.32881 -31.90757 -30.74043 -29.15926 -27.13182 -25.22704 -24.79486 -23.85120 -22.65765 -21.61678 -21.20654 -21.08705 -20.25229 -17.76259 -17.64091 -17.10531 -16.97950 -16.76828 -16.06935 -15.46825 -15.38835 -14.93629 -14.57983 -14.38464 -14.27526 -14.19203 -13.96831 -13.45557 -13.42332 -13.37909 -13.04800 -12.62354 -12.52085 -12.33983 -12.12968 -12.01273 -11.68037 -11.48296 -11.24435 -11.08687 -10.79817 -10.75777 -10.58700 -10.41656 -10.08471 -9.84502 -9.73903 -9.41818 -9.29529 -8.79797 -8.76454 -8.03080 -7.17641 -6.40163 -3.99101 0.73113 0.95177 2.11046 2.43132 2.62426 2.97017 3.16350 3.16502 3.21313 3.33384 3.72655 4.00451 4.05892 4.28679 4.37795 4.43855 4.54853 4.55984 4.65187 4.68002 4.86063 4.92994 5.06669 5.14239 5.16913 5.23165 5.33926 5.45910 5.50399 5.57038 5.62997 5.70243 5.78526 5.80006 5.92932 5.96941 6.21530 6.29500 6.36074 6.37799 6.69549 6.95726 7.11467 7.29975 7.35380 7.41267 7.48382 7.65799 7.86954 8.05030 8.24467 9.05684 9.76778 10.78204 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.002102 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.340883 B =13320.296111 C =14757.404511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.034 4.034 15 C -0.092 4.092 16 C 0.518 3.482 17 O -0.513 6.513 18 N -0.712 5.712 19 C 0.104 3.896 20 H 0.140 0.860 21 C -0.184 4.184 22 C -0.126 4.126 23 H 0.119 0.881 24 C -0.100 4.100 25 C -0.068 4.068 26 C -0.169 4.169 27 C 0.091 3.909 28 N -0.481 5.481 29 C 0.098 3.902 30 C -0.175 4.175 31 H 0.269 0.731 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.401 0.599 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.298 -24.317 -2.544 24.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.035 4.035 15 C -0.132 4.132 16 C 0.305 3.695 17 O -0.385 6.385 18 N -0.363 5.363 19 C -0.002 4.002 20 H 0.157 0.843 21 C -0.223 4.223 22 C -0.146 4.146 23 H 0.137 0.863 24 C -0.102 4.102 25 C -0.094 4.094 26 C -0.188 4.188 27 C -0.066 4.066 28 N -0.189 5.189 29 C -0.059 4.059 30 C -0.194 4.194 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.235 0.765 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.004 -23.752 -4.062 24.284 hybrid contribution -0.235 0.689 1.162 1.371 sum -3.240 -23.063 -2.900 23.470 Atomic orbital electron populations 1.70041 1.05939 1.27546 1.46491 1.25276 0.95835 0.98779 0.96671 0.85720 0.78896 0.80153 0.78700 1.19909 1.20296 1.19219 1.21319 0.91784 0.80858 1.52712 0.89120 1.83975 1.34228 1.11377 1.78758 1.19278 0.90257 0.87974 0.92383 1.21183 0.93833 0.98991 1.10898 1.20682 0.98391 0.92329 0.97911 1.20346 0.93279 0.96932 1.10981 1.18635 0.93235 0.91688 0.99938 1.20584 1.02720 0.95964 0.93923 1.20843 0.76613 0.79883 0.92194 1.90772 1.48629 1.59241 1.39901 1.45466 1.62346 1.21351 1.07142 1.21720 0.99347 0.90841 0.88323 0.84281 1.23653 0.96373 0.97905 1.04340 1.21467 0.90788 1.05898 0.96423 0.86328 1.20066 0.94379 1.00926 0.94871 1.21442 0.93618 0.95626 0.98746 1.22168 1.01690 1.01556 0.93429 1.22806 0.90092 0.95129 0.98532 1.67712 1.09430 1.12482 1.29311 1.22712 1.00377 0.95665 0.87132 1.19942 0.99043 0.90005 1.10426 0.92110 0.85608 0.87455 0.87919 0.88121 0.88234 0.76482 0.87659 0.87495 0.84717 0.84593 0.82712 0.82721 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.87 13.67 55.48 0.76 -25.11 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 9 O -0.18 -5.29 9.76 0.06 0.00 -5.29 16 10 C 0.15 3.90 6.65 -39.10 -0.26 3.64 16 11 C -0.23 -5.23 9.17 -39.39 -0.36 -5.59 16 12 C -0.07 -1.45 10.04 -39.61 -0.40 -1.85 16 13 C -0.20 -3.55 9.70 -39.54 -0.38 -3.93 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.17 5.83 -29.03 -0.17 -1.34 16 16 C 0.52 7.21 7.82 -10.99 -0.09 7.12 16 17 O -0.51 -9.86 15.60 5.55 0.09 -9.78 16 18 N -0.71 -6.76 5.57 -53.81 -0.30 -7.06 16 19 C 0.10 0.98 6.07 -67.93 -0.41 0.57 16 20 H 0.14 1.71 7.40 -51.93 -0.38 1.33 16 21 C -0.18 -1.21 9.79 -26.73 -0.26 -1.47 16 22 C -0.13 -0.90 5.99 -91.77 -0.55 -1.45 16 23 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 24 C -0.10 -0.87 5.62 -104.48 -0.59 -1.46 16 25 C -0.07 -0.55 9.89 -39.28 -0.39 -0.94 16 26 C -0.17 -1.29 10.11 -39.44 -0.40 -1.69 16 27 C 0.09 0.80 11.18 -17.55 -0.20 0.61 16 28 N -0.48 -5.23 10.36 -13.25 -0.14 -5.37 16 29 C 0.10 0.95 10.48 -17.55 -0.18 0.76 16 30 C -0.17 -3.85 9.65 -39.39 -0.38 -4.23 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.40 2.38 8.83 -40.82 -0.36 2.02 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.64 6.20 -51.93 -0.32 0.32 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.16 0.96 8.06 -52.48 -0.42 0.53 16 43 H 0.16 1.23 6.04 -52.48 -0.32 0.91 16 44 H 0.11 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -36.75 381.58 -9.45 -46.20 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.31 Total: 6.97 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -5.28 Total: -22.26 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.32 Total: -37.54 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.09 Total: -15.07 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.75 -9.45 -46.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807992171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.766 kcal (2) G-P(sol) polarization free energy of solvation -36.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds