Wall clock time and date at job start Tue Mar 31 2020 20:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 119.99813 * 2 1 4 4 H 1.48502 * 109.47120 * 270.00232 * 3 2 1 5 5 H 1.48496 * 109.47151 * 30.00142 * 3 2 1 6 6 H 1.48498 * 109.47130 * 150.00414 * 3 2 1 7 7 C 1.38656 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99868 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00168 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00027 * 185.06069 * 9 7 2 11 11 C 1.38903 * 120.06995 * 354.48905 * 10 9 7 12 12 C 1.38081 * 119.93350 * 179.97438 * 11 10 9 13 13 C 1.38322 * 120.06367 * 359.74080 * 12 11 10 14 14 C 1.38271 * 120.14098 * 0.51210 * 13 12 11 15 15 C 1.50707 * 119.96853 * 179.76705 * 14 13 12 16 16 C 1.50698 * 109.46859 * 269.72552 * 15 14 13 17 17 O 1.21286 * 120.00254 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00034 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00422 * 180.02562 * 18 16 15 20 20 H 1.09000 * 115.55941 * 350.69219 * 19 18 16 21 21 C 1.53001 * 117.50055 * 136.38027 * 19 18 16 22 22 C 1.53000 * 117.49991 * 205.00324 * 19 18 16 23 23 H 1.08995 * 117.51822 * 359.97438 * 22 19 18 24 24 C 1.50706 * 117.50028 * 145.01825 * 22 19 18 25 25 C 1.38668 * 120.42041 * 240.01594 * 24 22 19 26 26 C 1.38627 * 118.41868 * 179.75009 * 25 24 22 27 27 C 1.38229 * 119.16267 * 0.24819 * 26 25 24 28 28 N 1.31847 * 120.76103 * 0.02562 * 27 26 25 29 29 C 1.31883 * 121.73002 * 359.97323 * 28 27 26 30 30 C 1.38122 * 120.07271 * 359.48854 * 14 13 12 31 31 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.03336 * 359.97438 * 11 10 9 33 33 H 1.08002 * 119.96501 * 179.97438 * 12 11 10 34 34 H 1.08000 * 119.92949 * 180.27893 * 13 12 11 35 35 H 1.08995 * 109.47321 * 149.72356 * 15 14 13 36 36 H 1.09002 * 109.46797 * 29.72080 * 15 14 13 37 37 H 0.97007 * 119.99591 * 0.02562 * 18 16 15 38 38 H 1.08997 * 117.49879 * 359.97438 * 21 19 18 39 39 H 1.08997 * 117.51668 * 214.97019 * 21 19 18 40 40 H 1.08000 * 120.79088 * 0.02580 * 25 24 22 41 41 H 1.08002 * 120.41808 * 180.23319 * 26 25 24 42 42 H 1.08005 * 119.61691 * 180.02562 * 27 26 25 43 43 H 1.08004 * 119.61945 * 179.97438 * 29 28 27 44 44 H 1.07996 * 120.04226 * 180.22703 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5471 1.4402 0.6999 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4575 -3.4394 0.0927 12 6 4.2027 -4.5968 0.2014 13 6 3.5689 -5.8197 0.3284 14 6 2.1879 -5.8884 0.3364 15 6 1.5013 -7.2234 0.4697 16 6 1.2654 -7.8058 -0.9000 17 8 1.6193 -7.1967 -1.8873 18 7 0.6609 -9.0037 -1.0279 19 6 0.4320 -9.5702 -2.3594 20 1 0.6319 -8.9008 -3.1960 21 6 0.7351 -11.0569 -2.5562 22 6 -0.7150 -10.5709 -2.5137 23 1 -1.2993 -10.8082 -1.6246 24 6 -1.4822 -10.5556 -3.8108 25 6 -2.8448 -10.2987 -3.8176 26 6 -3.5084 -10.2895 -5.0347 27 6 -2.7957 -10.5400 -6.1923 28 7 -1.5011 -10.7860 -6.1473 29 6 -0.8375 -10.8027 -5.0078 30 6 1.4368 -4.7343 0.2280 31 1 -0.4850 0.8400 0.0004 32 1 3.9529 -2.4845 -0.0022 33 1 5.2815 -4.5467 0.1910 34 1 4.1539 -6.7231 0.4178 35 1 0.5462 -7.0916 0.9780 36 1 2.1308 -7.8994 1.0485 37 1 0.3775 -9.4907 -0.2383 38 1 1.1052 -11.6134 -1.6952 39 1 1.1341 -11.3659 -3.5223 40 1 -3.3757 -10.1059 -2.8971 41 1 -4.5688 -10.0893 -5.0779 42 1 -3.3052 -10.5343 -7.1446 43 1 0.2228 -11.0085 -5.0105 44 1 0.3582 -4.7882 0.2379 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807992171.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:35 Heat of formation + Delta-G solvation = -0.387247 kcal Electronic energy + Delta-G solvation = -26775.457840 eV Core-core repulsion = 22851.266093 eV Total energy + Delta-G solvation = -3924.191747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.47217 -41.02726 -40.38495 -38.59658 -37.95233 -34.52469 -34.32862 -33.46740 -33.14775 -31.47695 -30.84911 -28.50588 -27.25248 -25.42164 -24.54213 -23.64804 -23.19451 -22.39842 -21.82549 -21.45375 -19.50671 -18.81037 -18.43544 -17.88128 -17.66455 -16.87362 -16.80253 -16.57408 -16.17536 -16.05590 -15.82784 -15.52255 -15.21793 -15.03601 -14.83802 -14.80789 -14.33437 -14.00625 -13.97627 -13.76064 -13.60168 -13.10762 -12.97393 -12.88413 -12.66070 -12.48864 -12.46905 -12.38833 -12.21694 -12.10368 -11.74040 -11.20683 -11.01976 -10.80448 -10.72159 -10.42284 -10.13954 -9.63684 -9.49425 -8.97562 -8.47545 -6.16044 0.08387 0.31316 0.52178 0.76230 1.33372 1.43196 1.51422 1.61263 2.08961 2.17462 2.67555 2.84410 3.09070 3.18012 3.44110 3.46371 3.68084 3.73366 3.79245 3.85661 3.99526 4.04854 4.06739 4.11368 4.12874 4.32542 4.38243 4.45768 4.57698 4.59137 4.66117 4.74423 4.75238 4.88422 4.94089 5.04507 5.08382 5.13039 5.20086 5.31321 5.31735 5.50694 5.65497 5.73180 5.75230 5.75707 6.02642 6.24248 6.56843 6.97068 6.99760 7.30735 7.78902 8.76155 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.002102 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.340883 B =13320.296111 C =14757.404511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.110 3.890 11 C -0.247 4.247 12 C -0.075 4.075 13 C -0.180 4.180 14 C -0.027 4.027 15 C -0.089 4.089 16 C 0.517 3.483 17 O -0.579 6.579 18 N -0.686 5.686 19 C 0.074 3.926 20 H 0.102 0.898 21 C -0.161 4.161 22 C -0.109 4.109 23 H 0.144 0.856 24 C -0.111 4.111 25 C -0.077 4.077 26 C -0.169 4.169 27 C 0.075 3.925 28 N -0.515 5.515 29 C 0.080 3.920 30 C -0.194 4.194 31 H 0.273 0.727 32 H 0.117 0.883 33 H 0.145 0.855 34 H 0.149 0.851 35 H 0.124 0.876 36 H 0.148 0.852 37 H 0.423 0.577 38 H 0.130 0.870 39 H 0.110 0.890 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.174 0.826 43 H 0.162 0.838 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 -27.392 -1.033 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.266 4.266 12 C -0.093 4.093 13 C -0.198 4.198 14 C -0.027 4.027 15 C -0.128 4.128 16 C 0.305 3.695 17 O -0.457 6.457 18 N -0.338 5.338 19 C -0.032 4.032 20 H 0.120 0.880 21 C -0.199 4.199 22 C -0.129 4.129 23 H 0.161 0.839 24 C -0.114 4.114 25 C -0.103 4.103 26 C -0.189 4.189 27 C -0.081 4.081 28 N -0.224 5.224 29 C -0.077 4.077 30 C -0.213 4.213 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.261 0.739 38 H 0.148 0.852 39 H 0.128 0.872 40 H 0.174 0.826 41 H 0.180 0.820 42 H 0.191 0.809 43 H 0.179 0.821 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.830 -26.940 -2.518 27.119 hybrid contribution -0.567 1.258 0.657 1.529 sum -2.398 -25.681 -1.861 25.860 Atomic orbital electron populations 1.70189 1.08035 1.28764 1.49127 1.26617 0.96900 1.02756 0.95900 0.84576 0.77856 0.74482 0.79202 1.18995 1.19301 1.17556 1.21826 0.92493 0.81520 1.53174 0.88272 1.83933 1.35910 1.12573 1.81770 1.19902 0.91695 0.87973 0.94407 1.21300 0.93145 1.00254 1.11951 1.21147 1.00237 0.91551 0.96341 1.20996 0.93552 0.98055 1.07235 1.19213 0.93764 0.92942 0.96795 1.20706 1.04465 0.93543 0.94088 1.20992 0.76260 0.80556 0.91661 1.90767 1.51914 1.61237 1.41828 1.45164 1.60481 1.19971 1.08203 1.21599 1.02687 0.91797 0.87166 0.88035 1.23748 0.95682 0.94982 1.05510 1.21526 0.90990 1.03836 0.96525 0.83862 1.20278 0.94999 1.00899 0.95187 1.21822 0.93617 0.95018 0.99846 1.22496 1.02977 1.00457 0.92921 1.23240 0.89777 0.95039 1.00050 1.67685 1.10660 1.13769 1.30238 1.22933 1.00928 0.96317 0.87507 1.20240 0.99291 0.90529 1.11258 0.91847 0.86544 0.83720 0.83309 0.85788 0.83384 0.73897 0.85198 0.87224 0.82598 0.81994 0.80869 0.82109 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.41 13.67 21.61 0.30 -58.11 16 2 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 3 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.41 -25.22 9.49 67.92 0.64 -24.58 16 8 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 9 O -0.23 -14.90 9.76 -22.70 -0.22 -15.12 16 10 C 0.11 5.86 6.65 22.58 0.15 6.01 16 11 C -0.25 -11.54 9.17 22.39 0.21 -11.34 16 12 C -0.07 -2.75 10.04 22.25 0.22 -2.52 16 13 C -0.18 -5.87 9.70 22.30 0.22 -5.66 16 14 C -0.03 -0.92 4.37 -19.88 -0.09 -1.00 16 15 C -0.09 -1.93 5.83 29.10 0.17 -1.76 16 16 C 0.52 13.30 7.82 87.66 0.69 13.98 16 17 O -0.58 -22.32 15.60 -3.05 -0.05 -22.37 16 18 N -0.69 -11.02 5.57 -442.54 -2.46 -13.48 16 19 C 0.07 1.28 6.07 44.99 0.27 1.56 16 20 H 0.10 2.60 7.40 -2.39 -0.02 2.59 16 21 C -0.16 -1.65 9.79 30.59 0.30 -1.35 16 22 C -0.11 -1.29 5.99 -11.54 -0.07 -1.36 16 23 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 24 C -0.11 -1.80 5.62 -19.77 -0.11 -1.91 16 25 C -0.08 -1.11 9.89 22.47 0.22 -0.89 16 26 C -0.17 -2.35 10.11 22.36 0.23 -2.12 16 27 C 0.08 1.29 11.18 84.69 0.95 2.24 16 28 N -0.51 -11.33 10.36 -195.84 -2.03 -13.36 16 29 C 0.08 1.53 10.48 84.67 0.89 2.42 16 30 C -0.19 -8.79 9.65 22.39 0.22 -8.57 16 31 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 33 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 34 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 35 H 0.12 2.18 8.08 -2.39 -0.02 2.16 16 36 H 0.15 1.84 8.08 -2.39 -0.02 1.82 16 37 H 0.42 3.06 8.83 -92.70 -0.82 2.24 16 38 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 1.09 6.20 -2.39 -0.01 1.08 16 40 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 41 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 42 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.16 2.60 6.04 -2.91 -0.02 2.59 16 44 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -90.01 381.58 3.36 -86.65 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.23 Total: 27.25 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 5.56 Total: -37.84 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -4.20 Total: -84.95 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.27 Total: -37.49 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -90.01 3.36 -86.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807992171.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.263 kcal (2) G-P(sol) polarization free energy of solvation -90.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds