Wall clock time and date at job start Tue Mar 31 2020 20:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86796 * 120.00095 * 2 1 4 4 H 1.48500 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47499 * 300.00377 * 3 2 1 6 6 H 1.48507 * 109.46923 * 59.99916 * 3 2 1 7 7 C 1.38649 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00055 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00148 * 185.06874 * 9 7 2 11 11 C 1.38882 * 120.06908 * 354.58463 * 10 9 7 12 12 C 1.38096 * 119.93040 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.07085 * 0.02703 * 12 11 10 14 14 C 1.50690 * 119.92912 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47617 * 89.99862 * 14 13 12 16 16 O 1.21286 * 119.99921 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00288 * 179.97438 * 15 14 13 18 18 C 1.46502 * 120.00134 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47085 * 180.02562 * 18 17 15 20 20 C 1.32562 * 120.00239 * 127.04649 * 19 18 17 21 21 C 1.47818 * 120.00070 * 7.78725 * 20 19 18 22 22 C 1.39953 * 120.55378 * 38.35066 * 21 20 19 23 23 C 1.38372 * 118.29028 * 180.02562 * 22 21 20 24 24 C 1.38334 * 119.30860 * 0.02562 * 23 22 21 25 25 N 1.31896 * 121.06999 * 0.02562 * 24 23 22 26 26 C 1.31723 * 121.87515 * 359.65589 * 25 24 23 27 27 C 1.38304 * 120.13416 * 0.24767 * 13 12 11 28 28 C 1.38102 * 120.07077 * 359.44889 * 27 13 12 29 29 H 0.97005 * 120.00107 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.02963 * 0.02562 * 11 10 9 31 31 H 1.08006 * 119.96354 * 179.97438 * 12 11 10 32 32 H 1.09008 * 109.47130 * 209.99838 * 14 13 12 33 33 H 1.08999 * 109.47662 * 329.99153 * 14 13 12 34 34 H 0.97003 * 119.99784 * 359.97438 * 17 15 14 35 35 H 1.09002 * 109.46810 * 299.99731 * 18 17 15 36 36 H 1.08995 * 109.47407 * 59.99768 * 18 17 15 37 37 H 1.07998 * 119.99498 * 307.04032 * 19 18 17 38 38 H 1.08001 * 119.99869 * 187.79233 * 20 19 18 39 39 H 1.07993 * 120.85666 * 359.97438 * 22 21 20 40 40 H 1.08005 * 120.34476 * 180.02562 * 23 22 21 41 41 H 1.07992 * 119.46717 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.71719 * 180.33679 * 26 25 24 43 43 H 1.07997 * 119.95850 * 179.70782 * 27 13 12 44 44 H 1.07995 * 120.03487 * 180.26914 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1058 11 6 3.4572 -3.4393 0.0951 12 6 4.2024 -4.5969 0.2029 13 6 3.5687 -5.8205 0.3209 14 6 4.3849 -7.0818 0.4377 15 6 4.6617 -7.3683 1.8911 16 8 4.2382 -6.6215 2.7478 17 7 5.3799 -8.4544 2.2390 18 6 5.6494 -8.7326 3.6519 19 6 6.4656 -9.9941 3.7687 20 6 7.5974 -9.9897 4.4588 21 6 7.9731 -8.8023 5.2549 22 6 7.0012 -8.0787 5.9553 23 6 7.4048 -6.9745 6.6851 24 6 8.7430 -6.6241 6.6987 25 7 9.6369 -7.3244 6.0279 26 6 9.3029 -8.3865 5.3240 27 6 2.1873 -5.8894 0.3262 28 6 1.4365 -4.7347 0.2250 29 1 -0.4850 0.8401 0.0004 30 1 3.9526 -2.4841 0.0025 31 1 5.2812 -4.5467 0.1942 32 1 3.8319 -7.9142 0.0023 33 1 5.3281 -6.9548 -0.0936 34 1 5.7183 -9.0520 1.5539 35 1 6.2031 -7.9005 4.0868 36 1 4.7064 -8.8591 4.1837 37 1 6.1284 -10.9016 3.2901 38 1 8.2450 -10.8538 4.4394 39 1 5.9628 -8.3739 5.9262 40 1 6.6826 -6.3924 7.2384 41 1 9.0609 -5.7630 7.2678 42 1 10.0644 -8.9376 4.7923 43 1 1.6954 -6.8468 0.4137 44 1 0.3580 -4.7888 0.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816739916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:56 Heat of formation + Delta-G solvation = 18.160664 kcal Electronic energy + Delta-G solvation = -26818.522176 eV Core-core repulsion = 22895.134726 eV Total energy + Delta-G solvation = -3923.387449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.60175 -39.74799 -38.76564 -36.79551 -36.22718 -33.94876 -32.43993 -32.35961 -31.44039 -30.40247 -30.10391 -27.50504 -25.98837 -24.96577 -23.78242 -23.45562 -21.92942 -21.09759 -20.36114 -19.57681 -17.93955 -17.60981 -16.98796 -16.90032 -16.84395 -16.01598 -15.72308 -15.41166 -14.98852 -14.54921 -14.30582 -14.25010 -14.18261 -13.77428 -13.69583 -13.50907 -13.31340 -13.17537 -12.94329 -12.65707 -12.58884 -12.36057 -11.82003 -11.59650 -11.47199 -11.24073 -10.82602 -10.76491 -10.71249 -10.56285 -10.38885 -10.03813 -9.81157 -9.67751 -9.28031 -9.12457 -8.87104 -8.78315 -8.10653 -7.12027 -6.41067 -3.99449 0.40481 0.92122 1.73348 2.29330 2.31937 2.78003 3.14221 3.16684 3.22266 3.31453 3.51855 4.00367 4.04994 4.25077 4.39003 4.51287 4.56582 4.59425 4.72606 4.87688 4.99472 5.12410 5.14479 5.27428 5.28957 5.35692 5.36938 5.38927 5.52227 5.66133 5.69207 5.76774 5.77286 5.89038 5.93348 6.10858 6.26049 6.31985 6.36102 6.46289 6.74732 6.95868 7.09976 7.28244 7.41514 7.44757 7.49840 7.62041 7.88477 8.04523 8.32161 9.04905 9.75732 10.77220 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.002167 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.070193 B =12920.899007 C =14468.804817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.170 4.170 14 C -0.079 4.079 15 C 0.508 3.492 16 O -0.519 6.519 17 N -0.738 5.738 18 C 0.132 3.868 19 C -0.156 4.156 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.063 4.063 23 C -0.169 4.169 24 C 0.100 3.900 25 N -0.486 5.486 26 C 0.111 3.889 27 C -0.060 4.060 28 C -0.191 4.191 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.398 0.602 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.108 0.892 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.041 -21.786 7.926 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.251 4.251 12 C -0.075 4.075 13 C -0.171 4.171 14 C -0.119 4.119 15 C 0.295 3.705 16 O -0.393 6.393 17 N -0.392 5.392 18 C 0.010 3.990 19 C -0.175 4.175 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.089 4.089 23 C -0.189 4.189 24 C -0.056 4.056 25 N -0.194 5.194 26 C -0.047 4.047 27 C -0.078 4.078 28 C -0.211 4.211 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.232 0.768 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.126 0.874 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.155 -20.708 8.577 27.629 hybrid contribution -0.244 0.195 -0.276 0.417 sum 15.910 -20.513 8.301 27.255 Atomic orbital electron populations 1.70052 1.05940 1.27478 1.46405 1.25284 0.95845 0.98812 0.96643 0.85651 0.79162 0.80425 0.78211 1.19107 1.20169 1.20158 1.21375 0.91824 0.80848 1.52577 0.89050 1.83977 1.34357 1.11454 1.78429 1.19383 0.90286 0.88036 0.92017 1.21105 0.93812 0.98755 1.11459 1.20508 0.98019 0.91801 0.97162 1.18628 0.93209 0.92758 1.12536 1.20402 1.01228 0.98114 0.92144 1.21101 0.77227 0.79914 0.92266 1.90748 1.49688 1.46860 1.52038 1.46097 1.57117 1.28278 1.07729 1.20778 0.99152 0.95515 0.83593 1.23389 0.95455 0.98333 1.00287 1.21613 0.96495 0.96423 0.97255 1.20078 0.94886 0.97345 0.99724 1.21913 0.99704 0.93852 0.93440 1.22176 0.97878 0.98165 1.00632 1.22865 0.89424 0.97950 0.95398 1.67639 1.38270 1.06286 1.07219 1.22944 0.93950 0.92859 0.94933 1.20396 0.92748 0.96696 0.97974 1.20152 0.99476 0.90281 1.11166 0.92128 0.85596 0.87888 0.88944 0.89029 0.76803 0.90120 0.90773 0.85450 0.85124 0.84346 0.84287 0.82587 0.82615 0.87401 0.86549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.82 13.67 55.48 0.76 -25.07 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -11.20 9.49 30.88 0.29 -10.91 16 8 H 0.09 2.45 5.20 -52.48 -0.27 2.17 16 9 O -0.18 -5.26 9.76 0.04 0.00 -5.26 16 10 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 11 C -0.23 -5.30 9.17 -39.40 -0.36 -5.66 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 13 C -0.17 -3.00 4.38 -104.58 -0.46 -3.46 16 14 C -0.08 -0.99 5.83 -29.04 -0.17 -1.16 16 15 C 0.51 6.99 7.82 -10.99 -0.09 6.91 16 16 O -0.52 -9.81 16.03 5.55 0.09 -9.72 16 17 N -0.74 -7.03 5.55 -61.47 -0.34 -7.37 16 18 C 0.13 1.20 4.46 -5.19 -0.02 1.17 16 19 C -0.16 -0.92 9.59 -36.22 -0.35 -1.27 16 20 C -0.10 -0.58 9.82 -37.57 -0.37 -0.94 16 21 C -0.12 -0.96 5.15 -104.87 -0.54 -1.50 16 22 C -0.06 -0.55 7.44 -38.89 -0.29 -0.84 16 23 C -0.17 -1.46 10.10 -39.50 -0.40 -1.86 16 24 C 0.10 0.91 11.17 -17.49 -0.20 0.72 16 25 N -0.49 -5.08 10.35 -12.92 -0.13 -5.21 16 26 C 0.11 0.97 10.95 -17.13 -0.19 0.78 16 27 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 28 C -0.19 -4.24 9.99 -39.40 -0.39 -4.63 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 31 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.09 0.90 8.08 -51.92 -0.42 0.48 16 33 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.40 2.48 8.46 -40.82 -0.35 2.13 16 35 H 0.08 0.88 4.80 -51.93 -0.25 0.63 16 36 H 0.07 0.72 8.02 -51.93 -0.42 0.30 16 37 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.14 1.07 6.47 -52.49 -0.34 0.73 16 40 H 0.14 0.96 8.06 -52.48 -0.42 0.53 16 41 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -36.59 380.64 -8.84 -45.43 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.28 Total: 6.43 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -4.65 Total: -20.97 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.28 Total: -37.65 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.09 Total: -14.98 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.59 -8.84 -45.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816739916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.593 kcal (2) G-P(sol) polarization free energy of solvation -36.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds