Wall clock time and date at job start Tue Mar 31 2020 20:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86796 * 120.00095 * 2 1 4 4 H 1.48500 * 109.47372 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47499 * 300.00377 * 3 2 1 6 6 H 1.48507 * 109.46923 * 59.99916 * 3 2 1 7 7 C 1.38649 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00055 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.35756 * 117.00148 * 185.06874 * 9 7 2 11 11 C 1.38882 * 120.06908 * 354.58463 * 10 9 7 12 12 C 1.38096 * 119.93040 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.07085 * 0.02703 * 12 11 10 14 14 C 1.50690 * 119.92912 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47617 * 89.99862 * 14 13 12 16 16 O 1.21286 * 119.99921 * 359.97438 * 15 14 13 17 17 N 1.34776 * 120.00288 * 179.97438 * 15 14 13 18 18 C 1.46502 * 120.00134 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47085 * 180.02562 * 18 17 15 20 20 C 1.32562 * 120.00239 * 127.04649 * 19 18 17 21 21 C 1.47818 * 120.00070 * 7.78725 * 20 19 18 22 22 C 1.39953 * 120.55378 * 38.35066 * 21 20 19 23 23 C 1.38372 * 118.29028 * 180.02562 * 22 21 20 24 24 C 1.38334 * 119.30860 * 0.02562 * 23 22 21 25 25 N 1.31896 * 121.06999 * 0.02562 * 24 23 22 26 26 C 1.31723 * 121.87515 * 359.65589 * 25 24 23 27 27 C 1.38304 * 120.13416 * 0.24767 * 13 12 11 28 28 C 1.38102 * 120.07077 * 359.44889 * 27 13 12 29 29 H 0.97005 * 120.00107 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.02963 * 0.02562 * 11 10 9 31 31 H 1.08006 * 119.96354 * 179.97438 * 12 11 10 32 32 H 1.09008 * 109.47130 * 209.99838 * 14 13 12 33 33 H 1.08999 * 109.47662 * 329.99153 * 14 13 12 34 34 H 0.97003 * 119.99784 * 359.97438 * 17 15 14 35 35 H 1.09002 * 109.46810 * 299.99731 * 18 17 15 36 36 H 1.08995 * 109.47407 * 59.99768 * 18 17 15 37 37 H 1.07998 * 119.99498 * 307.04032 * 19 18 17 38 38 H 1.08001 * 119.99869 * 187.79233 * 20 19 18 39 39 H 1.07993 * 120.85666 * 359.97438 * 22 21 20 40 40 H 1.08005 * 120.34476 * 180.02562 * 23 22 21 41 41 H 1.07992 * 119.46717 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.71719 * 180.33679 * 26 25 24 43 43 H 1.07997 * 119.95850 * 179.70782 * 27 13 12 44 44 H 1.07995 * 120.03487 * 180.26914 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1058 11 6 3.4572 -3.4393 0.0951 12 6 4.2024 -4.5969 0.2029 13 6 3.5687 -5.8205 0.3209 14 6 4.3849 -7.0818 0.4377 15 6 4.6617 -7.3683 1.8911 16 8 4.2382 -6.6215 2.7478 17 7 5.3799 -8.4544 2.2390 18 6 5.6494 -8.7326 3.6519 19 6 6.4656 -9.9941 3.7687 20 6 7.5974 -9.9897 4.4588 21 6 7.9731 -8.8023 5.2549 22 6 7.0012 -8.0787 5.9553 23 6 7.4048 -6.9745 6.6851 24 6 8.7430 -6.6241 6.6987 25 7 9.6369 -7.3244 6.0279 26 6 9.3029 -8.3865 5.3240 27 6 2.1873 -5.8894 0.3262 28 6 1.4365 -4.7347 0.2250 29 1 -0.4850 0.8401 0.0004 30 1 3.9526 -2.4841 0.0025 31 1 5.2812 -4.5467 0.1942 32 1 3.8319 -7.9142 0.0023 33 1 5.3281 -6.9548 -0.0936 34 1 5.7183 -9.0520 1.5539 35 1 6.2031 -7.9005 4.0868 36 1 4.7064 -8.8591 4.1837 37 1 6.1284 -10.9016 3.2901 38 1 8.2450 -10.8538 4.4394 39 1 5.9628 -8.3739 5.9262 40 1 6.6826 -6.3924 7.2384 41 1 9.0609 -5.7630 7.2678 42 1 10.0644 -8.9376 4.7923 43 1 1.6954 -6.8468 0.4137 44 1 0.3580 -4.7888 0.2336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816739916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:55 Heat of formation + Delta-G solvation = -6.747080 kcal Electronic energy + Delta-G solvation = -26819.602257 eV Core-core repulsion = 22895.134726 eV Total energy + Delta-G solvation = -3924.467530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.28949 -40.98683 -40.33343 -38.28332 -37.18792 -34.80112 -34.39888 -33.00442 -32.85402 -31.78361 -31.11258 -28.67420 -27.47350 -26.48366 -24.42306 -24.14936 -23.63981 -22.51596 -21.41576 -20.29837 -19.84386 -18.86991 -18.26574 -17.81283 -17.55008 -16.91639 -16.73258 -16.34770 -16.25775 -16.07162 -15.77420 -15.51456 -15.46789 -14.97427 -14.81912 -14.62351 -14.42940 -14.39681 -14.14721 -13.84691 -13.62226 -13.44548 -13.19646 -12.98584 -12.74881 -12.49031 -12.28200 -12.25297 -12.12739 -12.10165 -11.36695 -11.18339 -10.95904 -10.77372 -10.65151 -10.39108 -9.99983 -9.76746 -9.43404 -8.90067 -8.48338 -6.16354 -0.18557 0.26994 0.61067 0.66673 1.23344 1.32989 1.41762 1.51745 1.74428 2.16600 2.42185 2.84112 2.88817 3.18133 3.49772 3.52228 3.71284 3.86478 3.88580 3.90423 3.99089 4.05074 4.13629 4.17912 4.25005 4.29465 4.48253 4.52778 4.59433 4.68649 4.72284 4.80029 4.80800 4.93279 5.05291 5.08867 5.14196 5.16541 5.30194 5.40596 5.48684 5.56407 5.68747 5.71338 5.76602 5.77872 6.02331 6.23031 6.65692 6.96388 6.97336 7.37956 7.77780 8.75384 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.012900 B = 0.002167 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.070193 B =12920.899007 C =14468.804817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.099 0.901 9 O -0.233 6.233 10 C 0.111 3.889 11 C -0.244 4.244 12 C -0.062 4.062 13 C -0.145 4.145 14 C -0.077 4.077 15 C 0.508 3.492 16 O -0.582 6.582 17 N -0.715 5.715 18 C 0.129 3.871 19 C -0.147 4.147 20 C -0.095 4.095 21 C -0.120 4.120 22 C -0.077 4.077 23 C -0.180 4.180 24 C 0.084 3.916 25 N -0.513 5.513 26 C 0.099 3.901 27 C -0.057 4.057 28 C -0.206 4.206 29 H 0.273 0.727 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.419 0.581 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.149 0.851 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.848 -25.299 7.315 32.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.116 0.884 9 O -0.140 6.140 10 C 0.061 3.939 11 C -0.264 4.264 12 C -0.080 4.080 13 C -0.146 4.146 14 C -0.117 4.117 15 C 0.296 3.704 16 O -0.461 6.461 17 N -0.369 5.369 18 C 0.006 3.994 19 C -0.165 4.165 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.103 4.103 23 C -0.200 4.200 24 C -0.072 4.072 25 N -0.222 5.222 26 C -0.058 4.058 27 C -0.075 4.075 28 C -0.225 4.225 29 H 0.082 0.918 30 H 0.133 0.867 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.188 0.812 42 H 0.196 0.804 43 H 0.166 0.834 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.021 -24.329 7.944 31.887 hybrid contribution -0.984 0.888 -0.035 1.326 sum 18.037 -23.441 7.909 30.616 Atomic orbital electron populations 1.70192 1.07991 1.28721 1.49048 1.26604 0.96906 1.02729 0.95900 0.84523 0.78137 0.74794 0.78683 1.17653 1.18954 1.19361 1.21844 0.92437 0.81542 1.53128 0.88381 1.83936 1.35919 1.12568 1.81599 1.19943 0.91606 0.88028 0.94303 1.21215 0.93188 0.99933 1.12024 1.20924 0.99571 0.91290 0.96229 1.19273 0.93420 0.94542 1.07372 1.20535 1.02588 0.96452 0.92080 1.21224 0.76982 0.80148 0.92082 1.90755 1.52537 1.49184 1.53615 1.45876 1.55220 1.27114 1.08711 1.20787 0.99120 0.96632 0.82907 1.23392 0.94641 0.97712 1.00778 1.21835 0.96867 0.96235 0.96441 1.20348 0.94470 0.97917 0.99503 1.22116 1.00205 0.94145 0.93794 1.22382 0.98080 0.98566 1.00953 1.23156 0.89646 0.98588 0.95819 1.67641 1.39070 1.07316 1.08154 1.23383 0.94940 0.92649 0.94836 1.20891 0.93459 0.96981 0.96171 1.20455 0.99936 0.90669 1.11469 0.91817 0.86662 0.84708 0.84788 0.85530 0.74348 0.92162 0.91675 0.82406 0.82173 0.83994 0.83319 0.81209 0.80367 0.83356 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.25 13.67 21.61 0.30 -57.96 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 3 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 5 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.41 -25.20 9.49 67.92 0.64 -24.55 16 8 H 0.10 5.55 5.20 -2.91 -0.02 5.54 16 9 O -0.23 -14.75 9.76 -22.77 -0.22 -14.97 16 10 C 0.11 5.90 6.65 22.58 0.15 6.05 16 11 C -0.24 -11.45 9.17 22.39 0.21 -11.25 16 12 C -0.06 -2.30 9.69 22.25 0.22 -2.09 16 13 C -0.14 -4.66 4.38 -19.84 -0.09 -4.74 16 14 C -0.08 -1.50 5.83 29.10 0.17 -1.34 16 15 C 0.51 12.05 7.82 87.66 0.69 12.74 16 16 O -0.58 -20.99 16.03 -3.05 -0.05 -21.04 16 17 N -0.72 -10.55 5.55 -466.78 -2.59 -13.14 16 18 C 0.13 1.96 4.46 85.63 0.38 2.34 16 19 C -0.15 -1.10 9.59 24.54 0.24 -0.87 16 20 C -0.09 -0.75 9.82 23.66 0.23 -0.52 16 21 C -0.12 -1.72 5.15 -20.02 -0.10 -1.82 16 22 C -0.08 -1.28 7.44 22.72 0.17 -1.11 16 23 C -0.18 -3.12 10.10 22.32 0.23 -2.90 16 24 C 0.08 1.53 11.17 84.71 0.95 2.48 16 25 N -0.51 -10.45 10.35 -194.80 -2.02 -12.46 16 26 C 0.10 1.57 10.95 85.01 0.93 2.50 16 27 C -0.06 -2.01 9.69 22.25 0.22 -1.80 16 28 C -0.21 -9.35 9.99 22.39 0.22 -9.12 16 29 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 30 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 31 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 32 H 0.13 1.64 8.08 -2.38 -0.02 1.62 16 33 H 0.13 1.72 8.08 -2.39 -0.02 1.70 16 34 H 0.42 2.80 8.46 -92.71 -0.78 2.02 16 35 H 0.06 1.22 4.80 -2.39 -0.01 1.21 16 36 H 0.07 1.14 8.02 -2.39 -0.02 1.12 16 37 H 0.16 0.31 8.06 -2.91 -0.02 0.28 16 38 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.14 2.13 6.47 -2.91 -0.02 2.11 16 40 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 42 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 44 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -88.37 380.64 3.61 -84.76 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.26 Total: 25.20 kcal Atomic # 6 Polarization: -42.85 SS G_CDS: 5.91 Total: -36.95 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -4.31 Total: -83.56 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.27 Total: -36.01 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -88.37 3.61 -84.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816739916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.008 kcal (2) G-P(sol) polarization free energy of solvation -88.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds