Wall clock time and date at job start Tue Mar 31 2020 20:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86802 * 120.00282 * 2 1 4 4 H 1.48498 * 109.46884 * 270.00240 * 3 2 1 5 5 H 1.48498 * 109.46621 * 30.00115 * 3 2 1 6 6 H 1.48502 * 109.47180 * 150.00148 * 3 2 1 7 7 C 1.38659 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99772 * 0.02562 * 7 2 1 9 9 O 1.34829 * 119.99799 * 179.97438 * 7 2 1 10 10 C 1.35753 * 116.99425 * 185.03205 * 9 7 2 11 11 C 1.38898 * 120.07288 * 354.41465 * 10 9 7 12 12 C 1.38083 * 119.93108 * 179.72090 * 11 10 9 13 13 C 1.38325 * 120.06803 * 0.57188 * 12 11 10 14 14 C 1.38285 * 120.13745 * 359.67993 * 13 12 11 15 15 C 1.50701 * 119.96231 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47007 * 270.01788 * 15 14 13 17 17 O 1.21282 * 119.99768 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00109 * 180.02562 * 16 15 14 19 19 C 1.46502 * 120.00281 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47233 * 179.97438 * 19 18 16 21 21 C 1.32566 * 119.99899 * 126.77110 * 20 19 18 22 22 C 1.47821 * 120.00152 * 8.36263 * 21 20 19 23 23 C 1.39955 * 120.55444 * 40.75201 * 22 21 20 24 24 C 1.38373 * 118.29395 * 180.02562 * 23 22 21 25 25 C 1.38335 * 119.30056 * 0.02562 * 24 23 22 26 26 N 1.31902 * 121.07584 * 0.02562 * 25 24 23 27 27 C 1.31714 * 121.87061 * 359.66290 * 26 25 24 28 28 C 1.38124 * 120.06823 * 0.04157 * 14 13 12 29 29 H 0.97003 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03137 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.96757 * 180.27025 * 12 11 10 32 32 H 1.07998 * 119.93187 * 179.69677 * 13 12 11 33 33 H 1.08998 * 109.47352 * 30.01907 * 15 14 13 34 34 H 1.09000 * 109.46855 * 150.02149 * 15 14 13 35 35 H 0.97006 * 120.00057 * 359.97438 * 18 16 15 36 36 H 1.09007 * 109.46685 * 299.99522 * 19 18 16 37 37 H 1.08997 * 109.47129 * 59.99011 * 19 18 16 38 38 H 1.07998 * 120.00311 * 306.76609 * 20 19 18 39 39 H 1.08004 * 119.99844 * 188.36341 * 21 20 19 40 40 H 1.07999 * 120.85507 * 359.97438 * 23 22 21 41 41 H 1.08002 * 120.34684 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.46291 * 180.02562 * 25 24 23 43 43 H 1.07998 * 119.71632 * 180.34053 * 27 26 25 44 44 H 1.08004 * 120.03234 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9733 -2.4058 -0.1055 11 6 3.2232 -3.5748 -0.0899 12 6 3.8525 -4.7987 -0.2033 13 6 5.2293 -4.8619 -0.3203 14 6 5.9793 -3.7001 -0.3309 15 6 7.4790 -3.7735 -0.4592 16 6 8.0968 -3.8616 0.9125 17 8 7.3889 -3.8641 1.8973 18 7 9.4359 -3.9367 1.0449 19 6 10.0365 -4.0230 2.3784 20 6 11.5362 -4.0962 2.2501 21 6 12.3009 -3.2420 2.9156 22 6 11.7001 -2.3413 3.9221 23 6 10.7094 -2.8081 4.7934 24 6 10.1789 -1.9247 5.7170 25 6 10.6399 -0.6208 5.7489 26 7 11.5743 -0.2084 4.9143 27 6 12.1140 -1.0129 4.0219 28 6 5.3552 -2.4725 -0.2237 29 1 -0.4850 0.8401 0.0004 30 1 2.1487 -3.5263 0.0066 31 1 3.2695 -5.7077 -0.1956 32 1 5.7196 -5.8205 -0.4039 33 1 7.7514 -4.6561 -1.0378 34 1 7.8445 -2.8801 -0.9656 35 1 10.0021 -3.9344 0.2572 36 1 9.7637 -3.1406 2.9575 37 1 9.6713 -4.9167 2.8843 38 1 11.9880 -4.8447 1.6161 39 1 13.3628 -3.2040 2.7223 40 1 10.3671 -3.8313 4.7457 41 1 9.4130 -2.2499 6.4056 42 1 10.2280 0.0707 6.4689 43 1 12.8808 -0.6398 3.3591 44 1 5.9415 -1.5655 -0.2324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820396131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:28 Heat of formation + Delta-G solvation = 19.113800 kcal Electronic energy + Delta-G solvation = -27056.471053 eV Core-core repulsion = 23133.124934 eV Total energy + Delta-G solvation = -3923.346118 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.57894 -39.84183 -38.90869 -36.86153 -36.30950 -33.98866 -32.41606 -32.34594 -32.11412 -30.51513 -29.41525 -27.80983 -26.08276 -25.08787 -23.76897 -23.51970 -21.79736 -21.13494 -20.40746 -19.62548 -17.75769 -17.56753 -17.08860 -16.92435 -16.88475 -15.96611 -15.79217 -15.37423 -15.20592 -14.98696 -14.53455 -14.17420 -13.95350 -13.85828 -13.68225 -13.57558 -13.41349 -13.20153 -12.94834 -12.62072 -12.49594 -12.36199 -12.13143 -11.66279 -11.58962 -11.27524 -10.81656 -10.77647 -10.73452 -10.67905 -10.12439 -10.03763 -9.84768 -9.69660 -9.35034 -9.16731 -8.87865 -8.83055 -8.10860 -7.31711 -6.37094 -4.03633 0.42784 0.93858 1.70600 2.06788 2.32885 2.71079 3.23310 3.27355 3.28576 3.44570 3.52585 4.06396 4.25909 4.27980 4.39151 4.49712 4.53211 4.58277 4.74059 4.75895 4.87543 4.94729 5.10867 5.15527 5.19170 5.31949 5.37511 5.39683 5.48601 5.58513 5.67508 5.71904 5.77297 5.87496 5.93370 6.09546 6.15876 6.29067 6.30546 6.35602 6.56634 6.82852 7.13775 7.24993 7.35090 7.38941 7.64307 7.65107 7.85197 8.08828 8.24827 8.98606 9.61911 10.70814 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010542 B = 0.002590 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.434476 B =10807.575778 C =12695.371786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.160 3.840 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.035 4.035 15 C -0.093 4.093 16 C 0.513 3.487 17 O -0.518 6.518 18 N -0.736 5.736 19 C 0.135 3.865 20 C -0.158 4.158 21 C -0.097 4.097 22 C -0.119 4.119 23 C -0.063 4.063 24 C -0.169 4.169 25 C 0.101 3.899 26 N -0.485 5.485 27 C 0.112 3.888 28 C -0.175 4.175 29 H 0.279 0.721 30 H 0.133 0.867 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.399 0.601 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.731 -8.911 4.416 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.095 4.095 13 C -0.207 4.207 14 C -0.036 4.036 15 C -0.133 4.133 16 C 0.299 3.701 17 O -0.392 6.392 18 N -0.390 5.390 19 C 0.012 3.988 20 C -0.176 4.176 21 C -0.116 4.116 22 C -0.121 4.121 23 C -0.088 4.088 24 C -0.189 4.189 25 C -0.056 4.056 26 N -0.193 5.193 27 C -0.046 4.046 28 C -0.194 4.194 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.157 0.843 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 26.330 -7.659 5.237 27.917 hybrid contribution 0.099 -0.318 -0.393 0.515 sum 26.428 -7.978 4.844 28.028 Atomic orbital electron populations 1.69647 1.05540 1.28394 1.48425 1.24448 0.95008 0.98755 0.95770 0.86200 0.80406 0.81521 0.78909 1.19897 1.20786 1.18379 1.20767 0.76930 0.96610 1.52074 0.87651 1.83572 1.22567 1.25637 1.80691 1.19008 0.91502 0.85548 0.93066 1.21298 1.01146 0.91965 1.09225 1.20735 0.94135 0.96724 0.97861 1.20414 0.93901 0.96396 1.09989 1.18652 0.92001 0.93022 0.99905 1.20586 0.93919 1.04573 0.94227 1.20791 0.81423 0.75811 0.92061 1.90763 1.60922 1.47378 1.40141 1.46027 1.07080 1.77279 1.08611 1.20701 0.89693 1.02846 0.85566 1.23372 0.94703 0.98519 1.01006 1.21621 0.99745 0.94522 0.95714 1.20075 0.98382 0.95732 0.97936 1.21867 0.93492 1.00519 0.92966 1.22169 1.01489 0.95077 1.00121 1.22878 0.92441 0.94266 0.95966 1.67643 1.09539 1.37710 1.04440 1.22949 0.97560 0.89114 0.95003 1.19942 0.91990 0.96996 1.10500 0.91120 0.84986 0.87173 0.87742 0.88248 0.88250 0.76692 0.90182 0.90787 0.85443 0.85102 0.84476 0.84300 0.82562 0.82607 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.96 55.48 0.77 -25.23 16 2 C 0.06 1.81 5.49 -17.52 -0.10 1.72 16 3 Si 0.90 22.27 28.62 -169.99 -4.86 17.41 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.39 -11.26 9.95 30.89 0.31 -10.95 16 8 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 9 O -0.22 -6.02 8.59 0.04 0.00 -6.02 16 10 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 11 C -0.22 -4.91 9.17 -39.39 -0.36 -5.27 16 12 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 13 C -0.19 -3.30 9.70 -39.53 -0.38 -3.68 16 14 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.16 5.83 -29.03 -0.17 -1.32 16 16 C 0.51 7.01 7.82 -10.99 -0.09 6.92 16 17 O -0.52 -9.72 16.03 5.56 0.09 -9.63 16 18 N -0.74 -6.94 5.55 -61.47 -0.34 -7.28 16 19 C 0.13 1.21 4.53 -5.20 -0.02 1.19 16 20 C -0.16 -0.92 9.58 -36.22 -0.35 -1.27 16 21 C -0.10 -0.57 9.80 -37.57 -0.37 -0.94 16 22 C -0.12 -0.99 5.06 -104.87 -0.53 -1.52 16 23 C -0.06 -0.55 7.48 -38.89 -0.29 -0.84 16 24 C -0.17 -1.50 10.10 -39.50 -0.40 -1.89 16 25 C 0.10 0.97 11.17 -17.49 -0.20 0.77 16 26 N -0.49 -5.31 10.35 -12.92 -0.13 -5.44 16 27 C 0.11 1.01 10.95 -17.13 -0.19 0.83 16 28 C -0.17 -3.66 9.65 -39.39 -0.38 -4.04 16 29 H 0.28 7.58 8.31 -40.82 -0.34 7.25 16 30 H 0.13 3.10 5.64 -52.49 -0.30 2.81 16 31 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.40 2.43 8.46 -40.82 -0.35 2.08 16 36 H 0.08 0.89 4.95 -51.93 -0.26 0.63 16 37 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 39 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 40 H 0.14 1.04 6.76 -52.49 -0.35 0.68 16 41 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.11 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -35.96 380.03 -8.69 -44.65 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.32 Total: 5.41 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -4.63 Total: -19.60 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.30 Total: -37.95 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.09 Total: -15.64 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.86 Total: 17.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.96 -8.69 -44.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820396131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.765 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds