Wall clock time and date at job start Tue Mar 31 2020 20:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86802 * 120.00282 * 2 1 4 4 H 1.48498 * 109.46884 * 270.00240 * 3 2 1 5 5 H 1.48498 * 109.46621 * 30.00115 * 3 2 1 6 6 H 1.48502 * 109.47180 * 150.00148 * 3 2 1 7 7 C 1.38659 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99772 * 0.02562 * 7 2 1 9 9 O 1.34829 * 119.99799 * 179.97438 * 7 2 1 10 10 C 1.35753 * 116.99425 * 185.03205 * 9 7 2 11 11 C 1.38898 * 120.07288 * 354.41465 * 10 9 7 12 12 C 1.38083 * 119.93108 * 179.72090 * 11 10 9 13 13 C 1.38325 * 120.06803 * 0.57188 * 12 11 10 14 14 C 1.38285 * 120.13745 * 359.67993 * 13 12 11 15 15 C 1.50701 * 119.96231 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47007 * 270.01788 * 15 14 13 17 17 O 1.21282 * 119.99768 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00109 * 180.02562 * 16 15 14 19 19 C 1.46502 * 120.00281 * 180.02562 * 18 16 15 20 20 C 1.50694 * 109.47233 * 179.97438 * 19 18 16 21 21 C 1.32566 * 119.99899 * 126.77110 * 20 19 18 22 22 C 1.47821 * 120.00152 * 8.36263 * 21 20 19 23 23 C 1.39955 * 120.55444 * 40.75201 * 22 21 20 24 24 C 1.38373 * 118.29395 * 180.02562 * 23 22 21 25 25 C 1.38335 * 119.30056 * 0.02562 * 24 23 22 26 26 N 1.31902 * 121.07584 * 0.02562 * 25 24 23 27 27 C 1.31714 * 121.87061 * 359.66290 * 26 25 24 28 28 C 1.38124 * 120.06823 * 0.04157 * 14 13 12 29 29 H 0.97003 * 119.99819 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.03137 * 359.97438 * 11 10 9 31 31 H 1.07994 * 119.96757 * 180.27025 * 12 11 10 32 32 H 1.07998 * 119.93187 * 179.69677 * 13 12 11 33 33 H 1.08998 * 109.47352 * 30.01907 * 15 14 13 34 34 H 1.09000 * 109.46855 * 150.02149 * 15 14 13 35 35 H 0.97006 * 120.00057 * 359.97438 * 18 16 15 36 36 H 1.09007 * 109.46685 * 299.99522 * 19 18 16 37 37 H 1.08997 * 109.47129 * 59.99011 * 19 18 16 38 38 H 1.07998 * 120.00311 * 306.76609 * 20 19 18 39 39 H 1.08004 * 119.99844 * 188.36341 * 21 20 19 40 40 H 1.07999 * 120.85507 * 359.97438 * 23 22 21 41 41 H 1.08002 * 120.34684 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.46291 * 180.02562 * 25 24 23 43 43 H 1.07998 * 119.71632 * 180.34053 * 27 26 25 44 44 H 1.08004 * 120.03234 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9733 -2.4058 -0.1055 11 6 3.2232 -3.5748 -0.0899 12 6 3.8525 -4.7987 -0.2033 13 6 5.2293 -4.8619 -0.3203 14 6 5.9793 -3.7001 -0.3309 15 6 7.4790 -3.7735 -0.4592 16 6 8.0968 -3.8616 0.9125 17 8 7.3889 -3.8641 1.8973 18 7 9.4359 -3.9367 1.0449 19 6 10.0365 -4.0230 2.3784 20 6 11.5362 -4.0962 2.2501 21 6 12.3009 -3.2420 2.9156 22 6 11.7001 -2.3413 3.9221 23 6 10.7094 -2.8081 4.7934 24 6 10.1789 -1.9247 5.7170 25 6 10.6399 -0.6208 5.7489 26 7 11.5743 -0.2084 4.9143 27 6 12.1140 -1.0129 4.0219 28 6 5.3552 -2.4725 -0.2237 29 1 -0.4850 0.8401 0.0004 30 1 2.1487 -3.5263 0.0066 31 1 3.2695 -5.7077 -0.1956 32 1 5.7196 -5.8205 -0.4039 33 1 7.7514 -4.6561 -1.0378 34 1 7.8445 -2.8801 -0.9656 35 1 10.0021 -3.9344 0.2572 36 1 9.7637 -3.1406 2.9575 37 1 9.6713 -4.9167 2.8843 38 1 11.9880 -4.8447 1.6161 39 1 13.3628 -3.2040 2.7223 40 1 10.3671 -3.8313 4.7457 41 1 9.4130 -2.2499 6.4056 42 1 10.2280 0.0707 6.4689 43 1 12.8808 -0.6398 3.3591 44 1 5.9415 -1.5655 -0.2324 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820396131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:27 Heat of formation + Delta-G solvation = -4.999452 kcal Electronic energy + Delta-G solvation = -27057.516682 eV Core-core repulsion = 23133.124934 eV Total energy + Delta-G solvation = -3924.391747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.31219 -41.06244 -40.41561 -38.37702 -37.19849 -34.83155 -34.49470 -33.50713 -32.99431 -31.28618 -31.00798 -28.94613 -27.33088 -26.80010 -24.43946 -24.21405 -23.36452 -22.60344 -21.49698 -20.35481 -19.66124 -18.92961 -18.20442 -17.85530 -17.55263 -16.90229 -16.88482 -16.74623 -16.33477 -16.07863 -15.85531 -15.66026 -15.42988 -14.97922 -14.83146 -14.64105 -14.47081 -14.33855 -14.15006 -13.96047 -13.88027 -13.48917 -13.20578 -13.05383 -12.78420 -12.53131 -12.45908 -12.34711 -12.13696 -11.94796 -11.35689 -11.32523 -11.00072 -10.90779 -10.66607 -10.39570 -10.02979 -9.68359 -9.44821 -9.07198 -8.51882 -6.24444 -0.18075 0.26865 0.47632 0.69379 1.20586 1.27799 1.32363 1.49065 1.69382 2.26112 2.38139 2.78273 2.86163 3.04548 3.14872 3.49141 3.70751 3.76632 3.87928 3.90085 3.98131 4.06762 4.13136 4.17136 4.27142 4.30598 4.43305 4.51203 4.55286 4.65349 4.67985 4.70080 4.79244 4.92163 4.97507 5.05097 5.15495 5.24006 5.37645 5.39315 5.47153 5.64318 5.67951 5.71792 5.75646 5.75993 5.90681 6.24406 6.61131 6.82596 6.96856 7.32989 7.57860 8.60090 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010542 B = 0.002590 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.434476 B =10807.575778 C =12695.371786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.400 4.400 8 H 0.080 0.920 9 O -0.248 6.248 10 C 0.118 3.882 11 C -0.241 4.241 12 C -0.078 4.078 13 C -0.170 4.170 14 C -0.028 4.028 15 C -0.090 4.090 16 C 0.511 3.489 17 O -0.580 6.580 18 N -0.713 5.713 19 C 0.131 3.869 20 C -0.146 4.146 21 C -0.095 4.095 22 C -0.121 4.121 23 C -0.075 4.075 24 C -0.180 4.180 25 C 0.081 3.919 26 N -0.514 5.514 27 C 0.097 3.903 28 C -0.184 4.184 29 H 0.285 0.715 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.125 0.875 35 H 0.420 0.580 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.169 0.831 43 H 0.178 0.822 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.987 -10.739 2.918 32.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.476 4.476 8 H 0.098 0.902 9 O -0.156 6.156 10 C 0.070 3.930 11 C -0.260 4.260 12 C -0.096 4.096 13 C -0.188 4.188 14 C -0.029 4.029 15 C -0.129 4.129 16 C 0.299 3.701 17 O -0.459 6.459 18 N -0.367 5.367 19 C 0.008 3.992 20 C -0.164 4.164 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.199 4.199 25 C -0.074 4.074 26 N -0.223 5.223 27 C -0.060 4.060 28 C -0.203 4.203 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.143 0.857 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.178 0.822 39 H 0.178 0.822 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.187 0.813 43 H 0.195 0.805 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 30.659 -9.526 3.703 32.318 hybrid contribution -1.015 -0.061 0.068 1.019 sum 29.644 -9.587 3.771 31.383 Atomic orbital electron populations 1.69726 1.06818 1.29581 1.50332 1.25261 0.95891 1.02052 0.95561 0.85241 0.78584 0.77540 0.79469 1.18562 1.18967 1.19387 1.20722 0.78119 0.96155 1.52628 0.90212 1.83510 1.21275 1.27432 1.83387 1.19600 0.93098 0.85165 0.95172 1.21327 1.00205 0.93466 1.11026 1.21127 0.95559 0.96238 0.96662 1.21027 0.93163 0.98396 1.06245 1.19243 0.95289 0.91528 0.96796 1.20711 0.89727 1.08141 0.94334 1.20979 0.82422 0.75073 0.91644 1.90762 1.62541 1.50624 1.41978 1.45825 1.05997 1.75080 1.09824 1.20714 0.92024 1.01586 0.84923 1.23392 0.92374 0.99059 1.01587 1.21836 1.01116 0.93635 0.94814 1.20362 0.97831 0.95897 0.98156 1.22101 0.93854 1.00922 0.93203 1.22391 1.01847 0.95069 1.00616 1.23161 0.92763 0.95001 0.96491 1.67631 1.10400 1.38853 1.05420 1.23378 0.98042 0.89530 0.95061 1.20279 0.90604 0.99048 1.10360 0.90534 0.87518 0.84110 0.83201 0.83573 0.85702 0.74253 0.92570 0.91329 0.82216 0.82181 0.83742 0.83151 0.81339 0.80505 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.87 13.96 21.61 0.30 -56.57 16 2 C 0.01 0.63 5.49 84.84 0.47 1.10 16 3 Si 0.97 47.38 28.62 68.60 1.96 49.34 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.40 -24.72 9.95 67.92 0.68 -24.05 16 8 H 0.08 5.15 5.44 -2.91 -0.02 5.14 16 9 O -0.25 -14.35 8.59 -22.76 -0.20 -14.55 16 10 C 0.12 5.96 6.65 22.58 0.15 6.11 16 11 C -0.24 -11.36 9.17 22.39 0.21 -11.15 16 12 C -0.08 -2.86 10.04 22.25 0.22 -2.64 16 13 C -0.17 -5.33 9.70 22.30 0.22 -5.11 16 14 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 15 C -0.09 -1.78 5.83 29.10 0.17 -1.61 16 16 C 0.51 12.23 7.82 87.66 0.69 12.92 16 17 O -0.58 -20.91 16.03 -3.04 -0.05 -20.96 16 18 N -0.71 -10.58 5.55 -466.79 -2.59 -13.17 16 19 C 0.13 1.99 4.53 85.63 0.39 2.38 16 20 C -0.15 -1.09 9.58 24.53 0.24 -0.85 16 21 C -0.09 -0.78 9.80 23.66 0.23 -0.55 16 22 C -0.12 -1.80 5.06 -20.02 -0.10 -1.90 16 23 C -0.08 -1.27 7.48 22.72 0.17 -1.10 16 24 C -0.18 -3.23 10.10 22.33 0.23 -3.01 16 25 C 0.08 1.60 11.17 84.71 0.95 2.55 16 26 N -0.51 -11.25 10.35 -194.79 -2.02 -13.27 16 27 C 0.10 1.67 10.95 85.01 0.93 2.60 16 28 C -0.18 -7.62 9.65 22.39 0.22 -7.41 16 29 H 0.29 16.04 8.31 -92.71 -0.77 15.27 16 30 H 0.11 5.48 5.64 -2.91 -0.02 5.46 16 31 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.15 1.62 8.08 -2.39 -0.02 1.60 16 34 H 0.12 1.94 8.08 -2.39 -0.02 1.92 16 35 H 0.42 2.82 8.46 -92.70 -0.78 2.04 16 36 H 0.06 1.18 4.95 -2.38 -0.01 1.17 16 37 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 38 H 0.16 0.25 8.06 -2.91 -0.02 0.22 16 39 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.14 2.09 6.76 -2.91 -0.02 2.07 16 41 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -85.56 380.03 3.62 -81.94 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.26 Total: 19.95 kcal Atomic # 6 Polarization: -38.66 SS G_CDS: 5.95 Total: -32.72 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -4.30 Total: -83.01 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.24 Total: -35.51 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.96 Total: 49.34 kcal Total: -85.56 3.62 -81.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820396131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.945 kcal (2) G-P(sol) polarization free energy of solvation -85.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds