Wall clock time and date at job start Tue Mar 31 2020 20:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.50693 * 109.47399 * 179.97438 * 19 18 16 21 21 C 1.32574 * 119.99831 * 125.00107 * 20 19 18 22 22 C 1.47820 * 119.99819 * 180.02562 * 21 20 19 23 23 C 1.39954 * 120.55388 * 179.97438 * 22 21 20 24 24 C 1.38368 * 118.29472 * 180.02562 * 23 22 21 25 25 C 1.38332 * 119.30252 * 359.97438 * 24 23 22 26 26 N 1.31904 * 121.07603 * 0.02573 * 25 24 23 27 27 C 1.31715 * 121.86810 * 359.65050 * 26 25 24 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 36 36 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 37 37 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 38 38 H 1.08001 * 120.00601 * 305.00649 * 20 19 18 39 39 H 1.07996 * 119.99465 * 0.02562 * 21 20 19 40 40 H 1.08008 * 120.85156 * 359.97438 * 23 22 21 41 41 H 1.08004 * 120.34997 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.46352 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.71357 * 180.33805 * 27 26 25 44 44 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2547 -10.9032 -2.2340 21 6 -1.3974 -11.1274 -2.8676 22 6 -2.0700 -12.4374 -2.7375 23 6 -3.2769 -12.6864 -3.4008 24 6 -3.8662 -13.9287 -3.2459 25 6 -3.2494 -14.8759 -2.4485 26 7 -2.1116 -14.6131 -1.8352 27 6 -1.5091 -13.4481 -1.9567 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 0.3769 -9.4904 -0.2449 36 1 -0.1992 -8.8911 -2.9439 37 1 1.3856 -9.6985 -2.8750 38 1 0.1849 -11.6778 -1.6231 39 1 -1.8369 -10.3530 -3.4787 40 1 -3.7369 -11.9281 -4.0172 41 1 -4.7976 -14.1567 -3.7430 42 1 -3.7069 -15.8466 -2.3261 43 1 -0.5754 -13.2721 -1.4431 44 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820396133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:32 Heat of formation + Delta-G solvation = 11.377643 kcal Electronic energy + Delta-G solvation = -26018.173431 eV Core-core repulsion = 22094.491847 eV Total energy + Delta-G solvation = -3923.681583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.56394 -39.80650 -38.75137 -36.65421 -36.11584 -34.13200 -32.74119 -32.36091 -31.98261 -30.65719 -29.15639 -27.56932 -25.94373 -25.13242 -24.24288 -23.09504 -21.63494 -21.17505 -20.57394 -19.85718 -17.85948 -17.63077 -17.16141 -16.85401 -16.50784 -16.23659 -15.71644 -15.36982 -14.95487 -14.62191 -14.41919 -14.36609 -14.29187 -13.82808 -13.58098 -13.56815 -13.37956 -13.29681 -13.11075 -12.53932 -12.37179 -12.09305 -11.88843 -11.76681 -11.48424 -11.23763 -11.21396 -10.80157 -10.72351 -10.56611 -10.39262 -10.15231 -9.92531 -9.77850 -9.28127 -9.21298 -8.79314 -8.76481 -8.00771 -7.16046 -6.39402 -3.98206 0.20277 0.77008 1.86884 2.16891 2.45153 2.78071 3.15270 3.17074 3.22765 3.28921 3.46104 3.89695 4.01127 4.12636 4.30451 4.40620 4.49144 4.58800 4.65017 4.80223 4.94415 5.02720 5.13460 5.15609 5.21938 5.26905 5.30548 5.49537 5.54645 5.57808 5.65059 5.71570 5.80590 5.98815 5.99277 6.08455 6.21417 6.23403 6.34810 6.39628 6.71477 6.97574 7.13153 7.32321 7.41909 7.44772 7.48193 7.49934 7.88793 8.06035 8.31438 9.06626 9.78053 10.79060 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.001594 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.763164 B =17563.129775 C =18503.932386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.181 6.181 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.034 4.034 15 C -0.093 4.093 16 C 0.514 3.486 17 O -0.518 6.518 18 N -0.738 5.738 19 C 0.149 3.851 20 C -0.152 4.152 21 C -0.100 4.100 22 C -0.106 4.106 23 C -0.066 4.066 24 C -0.170 4.170 25 C 0.094 3.906 26 N -0.483 5.483 27 C 0.104 3.896 28 C -0.174 4.174 29 H 0.268 0.732 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.156 0.844 43 H 0.158 0.842 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.369 -26.990 -3.113 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.035 4.035 15 C -0.133 4.133 16 C 0.300 3.700 17 O -0.391 6.391 18 N -0.392 5.392 19 C 0.025 3.975 20 C -0.170 4.170 21 C -0.119 4.119 22 C -0.108 4.108 23 C -0.091 4.091 24 C -0.190 4.190 25 C -0.062 4.062 26 N -0.191 5.191 27 C -0.053 4.053 28 C -0.194 4.194 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.173 0.827 43 H 0.175 0.825 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.151 -26.952 -3.354 27.476 hybrid contribution -0.110 1.178 -0.277 1.215 sum -4.260 -25.774 -3.631 26.375 Atomic orbital electron populations 1.70056 1.05927 1.27398 1.46633 1.25276 0.95836 0.98767 0.96707 0.85651 0.79148 0.80467 0.78176 1.19123 1.20212 1.20197 1.21368 0.91807 0.80861 1.52585 0.89080 1.83976 1.34250 1.11376 1.78837 1.19281 0.90256 0.87970 0.92398 1.21182 0.93838 0.99002 1.10906 1.20679 0.98372 0.92337 0.97975 1.20350 0.93300 0.96884 1.10961 1.18665 0.93240 0.91785 0.99769 1.20585 1.02640 0.95882 0.94182 1.20802 0.76909 0.80200 0.92084 1.90769 1.49066 1.59341 1.39971 1.46022 1.63117 1.21450 1.08597 1.20267 1.00469 0.91169 0.85552 1.23439 0.95820 0.97850 0.99915 1.21642 0.95135 0.94669 1.00476 1.20070 0.96145 0.95465 0.99150 1.21773 0.93788 0.96999 0.96574 1.22137 1.01692 0.94482 1.00680 1.22858 0.91300 0.99463 0.92586 1.67651 1.09579 1.21241 1.20666 1.23029 0.98999 0.88066 0.95246 1.19941 0.99046 0.89984 1.10396 0.92188 0.85625 0.87484 0.87935 0.88338 0.88210 0.76606 0.90832 0.90290 0.86105 0.85526 0.84425 0.84501 0.82674 0.82523 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.85 13.67 55.48 0.76 -25.09 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 8 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 9 O -0.18 -5.33 9.76 0.05 0.00 -5.33 16 10 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 11 C -0.23 -5.26 9.17 -39.39 -0.36 -5.62 16 12 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 13 C -0.20 -3.57 9.70 -39.53 -0.38 -3.95 16 14 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.21 5.83 -29.03 -0.17 -1.38 16 16 C 0.51 7.22 7.82 -10.99 -0.09 7.14 16 17 O -0.52 -9.97 16.03 5.56 0.09 -9.89 16 18 N -0.74 -7.06 5.55 -61.47 -0.34 -7.40 16 19 C 0.15 1.32 6.12 -5.20 -0.03 1.28 16 20 C -0.15 -0.95 9.06 -36.22 -0.33 -1.28 16 21 C -0.10 -0.64 9.54 -37.57 -0.36 -1.00 16 22 C -0.11 -0.74 5.88 -104.87 -0.62 -1.36 16 23 C -0.07 -0.40 9.94 -38.89 -0.39 -0.79 16 24 C -0.17 -0.94 10.10 -39.50 -0.40 -1.33 16 25 C 0.09 0.63 11.17 -17.49 -0.20 0.43 16 26 N -0.48 -4.23 10.35 -12.92 -0.13 -4.36 16 27 C 0.10 0.79 10.58 -17.13 -0.18 0.61 16 28 C -0.17 -3.85 9.65 -39.40 -0.38 -4.23 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.40 2.56 8.46 -40.82 -0.35 2.21 16 36 H 0.07 0.74 7.81 -51.93 -0.41 0.33 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.12 0.57 6.07 -52.49 -0.32 0.26 16 39 H 0.13 0.74 7.87 -52.49 -0.41 0.32 16 40 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 41 H 0.14 0.40 8.06 -52.48 -0.42 -0.02 16 42 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.16 0.89 6.19 -52.48 -0.32 0.56 16 44 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -36.86 385.03 -8.95 -45.82 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.31 Total: 5.22 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -4.80 Total: -20.72 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.28 Total: -36.85 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.09 Total: -15.21 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.86 -8.95 -45.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820396133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.196 kcal (2) G-P(sol) polarization free energy of solvation -36.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds