Wall clock time and date at job start Tue Mar 31 2020 20:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.50693 * 109.47399 * 179.97438 * 19 18 16 21 21 C 1.32574 * 119.99831 * 125.00107 * 20 19 18 22 22 C 1.47820 * 119.99819 * 180.02562 * 21 20 19 23 23 C 1.39954 * 120.55388 * 179.97438 * 22 21 20 24 24 C 1.38368 * 118.29472 * 180.02562 * 23 22 21 25 25 C 1.38332 * 119.30252 * 359.97438 * 24 23 22 26 26 N 1.31904 * 121.07603 * 0.02573 * 25 24 23 27 27 C 1.31715 * 121.86810 * 359.65050 * 26 25 24 28 28 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 32 32 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 33 33 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 34 34 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 35 35 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 36 36 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 37 37 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 38 38 H 1.08001 * 120.00601 * 305.00649 * 20 19 18 39 39 H 1.07996 * 119.99465 * 0.02562 * 21 20 19 40 40 H 1.08008 * 120.85156 * 359.97438 * 23 22 21 41 41 H 1.08004 * 120.34997 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.46352 * 180.02562 * 25 24 23 43 43 H 1.08004 * 119.71357 * 180.33805 * 27 26 25 44 44 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2547 -10.9032 -2.2340 21 6 -1.3974 -11.1274 -2.8676 22 6 -2.0700 -12.4374 -2.7375 23 6 -3.2769 -12.6864 -3.4008 24 6 -3.8662 -13.9287 -3.2459 25 6 -3.2494 -14.8759 -2.4485 26 7 -2.1116 -14.6131 -1.8352 27 6 -1.5091 -13.4481 -1.9567 28 6 1.4365 -4.7345 0.2256 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5473 0.1885 32 1 4.1534 -6.7248 0.4030 33 1 2.1300 -7.9003 1.0435 34 1 0.5456 -7.0924 0.9735 35 1 0.3769 -9.4904 -0.2449 36 1 -0.1992 -8.8911 -2.9439 37 1 1.3856 -9.6985 -2.8750 38 1 0.1849 -11.6778 -1.6231 39 1 -1.8369 -10.3530 -3.4787 40 1 -3.7369 -11.9281 -4.0172 41 1 -4.7976 -14.1567 -3.7430 42 1 -3.7069 -15.8466 -2.3261 43 1 -0.5754 -13.2721 -1.4431 44 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820396133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:31 Heat of formation + Delta-G solvation = -13.405652 kcal Electronic energy + Delta-G solvation = -26019.248115 eV Core-core repulsion = 22094.491847 eV Total energy + Delta-G solvation = -3924.756268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.14307 -40.99522 -40.35591 -38.24359 -37.00333 -34.91556 -34.33521 -33.50673 -33.15534 -31.37354 -30.82058 -28.77250 -27.35824 -26.61872 -24.73050 -23.71526 -23.24345 -22.67560 -21.57684 -20.65152 -19.49002 -18.80231 -18.28032 -17.98618 -17.24067 -16.92897 -16.75492 -16.69004 -16.30840 -16.08031 -15.87733 -15.49942 -15.10636 -14.93130 -14.88078 -14.66556 -14.36770 -14.13450 -14.02575 -13.97186 -13.82319 -13.56012 -12.97436 -12.77188 -12.55003 -12.49824 -12.43866 -12.33345 -12.20988 -12.07606 -11.76473 -11.19578 -10.99624 -10.79886 -10.58661 -10.41670 -10.11539 -9.63001 -9.29397 -8.96512 -8.46786 -6.15216 -0.28351 0.31285 0.53464 0.77100 1.34280 1.36552 1.43277 1.53122 1.70022 2.17917 2.38538 2.86737 2.96294 3.19792 3.43483 3.46143 3.61247 3.82905 3.87241 3.97087 4.07486 4.11846 4.14118 4.20196 4.33464 4.35280 4.45377 4.53483 4.60077 4.62995 4.67931 4.75489 4.77950 4.86487 5.08512 5.10217 5.14068 5.19429 5.32277 5.40186 5.51646 5.64399 5.66605 5.74183 5.76889 5.77578 6.03601 6.25201 6.60716 6.97954 7.00207 7.32839 7.79844 8.77058 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.020941 B = 0.001594 C = 0.001513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.763164 B =17563.129775 C =18503.932386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.110 3.890 11 C -0.247 4.247 12 C -0.075 4.075 13 C -0.180 4.180 14 C -0.027 4.027 15 C -0.091 4.091 16 C 0.514 3.486 17 O -0.580 6.580 18 N -0.715 5.715 19 C 0.149 3.851 20 C -0.146 4.146 21 C -0.097 4.097 22 C -0.117 4.117 23 C -0.075 4.075 24 C -0.169 4.169 25 C 0.082 3.918 26 N -0.514 5.514 27 C 0.091 3.909 28 C -0.193 4.193 29 H 0.272 0.728 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.121 0.879 35 H 0.419 0.581 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.176 0.824 43 H 0.170 0.830 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.066 -29.729 -2.512 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.143 6.143 10 C 0.060 3.940 11 C -0.266 4.266 12 C -0.093 4.093 13 C -0.198 4.198 14 C -0.028 4.028 15 C -0.130 4.130 16 C 0.301 3.699 17 O -0.459 6.459 18 N -0.369 5.369 19 C 0.025 3.975 20 C -0.164 4.164 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.100 4.100 24 C -0.188 4.188 25 C -0.074 4.074 26 N -0.223 5.223 27 C -0.066 4.066 28 C -0.212 4.212 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.139 0.861 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.158 0.842 39 H 0.147 0.853 40 H 0.172 0.828 41 H 0.181 0.819 42 H 0.193 0.807 43 H 0.187 0.813 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.845 -29.796 -2.718 30.054 hybrid contribution -0.498 1.626 -0.477 1.766 sum -3.344 -28.169 -3.195 28.546 Atomic orbital electron populations 1.70201 1.08025 1.28663 1.49178 1.26613 0.96899 1.02730 0.95908 0.84507 0.78183 0.74730 0.78611 1.17538 1.19397 1.19075 1.21866 0.92494 0.81513 1.53105 0.88270 1.83933 1.35940 1.12578 1.81801 1.19896 0.91690 0.87950 0.94431 1.21298 0.93138 1.00259 1.11911 1.21140 1.00225 0.91525 0.96369 1.20990 0.93531 0.98030 1.07253 1.19232 0.93796 0.92971 0.96779 1.20707 1.04292 0.93565 0.94444 1.20933 0.76548 0.80835 0.91559 1.90762 1.52129 1.61220 1.41766 1.45822 1.61075 1.20069 1.09891 1.20260 1.00219 0.92126 0.84853 1.23302 0.95668 0.96827 1.00604 1.21696 0.95105 0.94622 1.00254 1.20152 0.96700 0.95447 0.99569 1.22114 0.93622 0.97787 0.96487 1.22441 1.02398 0.93899 1.00083 1.23302 0.90978 1.00692 0.92440 1.67654 1.10753 1.21994 1.21879 1.23284 0.99630 0.88049 0.95671 1.20227 0.99276 0.90486 1.11208 0.91878 0.86543 0.83718 0.83380 0.83642 0.86053 0.74312 0.92347 0.90894 0.84170 0.85286 0.82755 0.81910 0.80719 0.81273 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.21 13.67 21.61 0.30 -57.91 16 2 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 3 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 4 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.41 -25.16 9.49 67.92 0.64 -24.51 16 8 H 0.10 5.58 5.21 -2.91 -0.02 5.56 16 9 O -0.24 -14.93 9.76 -22.74 -0.22 -15.15 16 10 C 0.11 5.86 6.65 22.58 0.15 6.01 16 11 C -0.25 -11.52 9.17 22.39 0.21 -11.31 16 12 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 13 C -0.18 -5.90 9.70 22.30 0.22 -5.68 16 14 C -0.03 -0.95 4.37 -19.88 -0.09 -1.03 16 15 C -0.09 -2.04 5.83 29.10 0.17 -1.87 16 16 C 0.51 13.29 7.82 87.66 0.69 13.98 16 17 O -0.58 -22.01 16.03 -3.04 -0.05 -22.06 16 18 N -0.71 -11.78 5.55 -466.79 -2.59 -14.37 16 19 C 0.15 2.41 6.12 85.63 0.52 2.93 16 20 C -0.15 -1.52 9.06 24.53 0.22 -1.30 16 21 C -0.10 -1.09 9.54 23.65 0.23 -0.87 16 22 C -0.12 -1.45 5.88 -20.02 -0.12 -1.57 16 23 C -0.07 -0.78 9.94 22.72 0.23 -0.55 16 24 C -0.17 -1.53 10.10 22.32 0.23 -1.30 16 25 C 0.08 0.97 11.17 84.70 0.95 1.91 16 26 N -0.51 -8.42 10.35 -194.79 -2.02 -10.44 16 27 C 0.09 1.25 10.58 85.01 0.90 2.15 16 28 C -0.19 -8.75 9.65 22.39 0.22 -8.54 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.12 5.50 5.64 -2.91 -0.02 5.49 16 31 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 32 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.15 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.12 2.27 8.08 -2.39 -0.02 2.25 16 35 H 0.42 3.76 8.46 -92.71 -0.78 2.97 16 36 H 0.06 1.15 7.81 -2.38 -0.02 1.13 16 37 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 38 H 0.14 0.93 6.07 -2.91 -0.02 0.91 16 39 H 0.13 1.35 7.87 -2.91 -0.02 1.33 16 40 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.16 0.52 8.06 -2.91 -0.02 0.49 16 42 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.17 1.61 6.19 -2.91 -0.02 1.60 16 44 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -88.16 385.03 3.75 -84.41 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.26 Total: 24.26 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 6.04 Total: -35.04 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -4.31 Total: -82.72 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.27 Total: -37.20 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -88.16 3.75 -84.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820396133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.005 kcal (2) G-P(sol) polarization free energy of solvation -88.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds