Wall clock time and date at job start Tue Mar 31 2020 21:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37956 * 120.04933 * 2 1 4 4 F 1.35102 * 119.84516 * 0.02562 * 3 2 1 5 5 C 1.38762 * 120.30677 * 180.27838 * 3 2 1 6 6 C 1.38000 * 120.41223 * 359.76718 * 5 3 2 7 7 C 1.38893 * 120.09488 * 359.97438 * 6 5 3 8 8 N 1.38962 * 120.15116 * 180.02562 * 7 6 5 9 9 C 1.39784 * 120.05462 * 179.79504 * 2 1 3 10 10 C 1.47290 * 120.20235 * 359.96716 * 9 2 1 11 11 O 1.21520 * 120.00382 * 269.72924 * 10 9 2 12 12 O 1.34769 * 119.99534 * 89.73215 * 10 9 2 13 13 C 1.45199 * 117.00128 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.46832 * 329.99808 * 13 12 10 15 15 C 1.52998 * 109.47364 * 89.99539 * 13 12 10 16 16 C 1.50692 * 109.47544 * 210.00124 * 13 12 10 17 17 O 1.21285 * 119.99692 * 345.89898 * 16 13 12 18 18 N 1.34773 * 120.00412 * 165.90256 * 16 13 12 19 19 C 1.46497 * 119.99854 * 4.20479 * 18 16 13 20 20 C 1.46507 * 120.00281 * 184.48654 * 18 16 13 21 21 C 1.50700 * 109.46883 * 269.72184 * 20 18 16 22 22 H 1.08002 * 119.99875 * 359.97438 * 21 20 18 23 23 C 1.37874 * 120.00033 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00176 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46909 * 89.99933 * 25 23 21 27 27 H 1.48499 * 109.46949 * 209.99795 * 25 23 21 28 28 H 1.48491 * 109.47036 * 330.00430 * 25 23 21 29 29 H 1.08998 * 109.47115 * 270.20502 * 1 2 3 30 30 H 1.08997 * 109.47824 * 30.20744 * 1 2 3 31 31 H 1.09004 * 109.47044 * 150.21181 * 1 2 3 32 32 H 1.08000 * 119.79282 * 179.73965 * 5 3 2 33 33 H 1.07993 * 119.95246 * 179.97438 * 6 5 3 34 34 H 0.96999 * 119.99843 * 179.97438 * 8 7 6 35 35 H 0.97003 * 120.00212 * 359.97438 * 8 7 6 36 36 H 1.09001 * 109.46670 * 52.29790 * 15 13 12 37 37 H 1.08998 * 109.47411 * 172.29653 * 15 13 12 38 38 H 1.08997 * 109.47274 * 292.30077 * 15 13 12 39 39 H 1.08999 * 109.47510 * 268.49645 * 19 18 16 40 40 H 1.09000 * 109.46885 * 28.50006 * 19 18 16 41 41 H 1.09009 * 109.47102 * 148.49479 * 19 18 16 42 42 H 1.09001 * 109.47077 * 29.71870 * 20 18 16 43 43 H 1.09000 * 109.47311 * 149.71942 * 20 18 16 44 44 H 0.96998 * 119.99981 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1941 0.0000 4 9 1.5202 2.3629 0.0005 5 6 3.5854 1.2004 -0.0058 6 6 4.2893 0.0134 -0.0068 7 6 3.6110 -1.1986 -0.0015 8 7 4.3187 -2.3945 -0.0020 9 6 2.2071 -1.2099 0.0043 10 6 1.4764 -2.4887 0.0096 11 8 1.1797 -3.0148 1.0642 12 8 1.1368 -3.0755 -1.1551 13 6 0.4173 -4.3341 -1.0741 14 1 0.7103 -4.8623 -0.1666 15 6 -1.0876 -4.0601 -1.0412 16 6 0.7477 -5.1801 -2.2765 17 8 1.2988 -4.6821 -3.2353 18 7 0.4307 -6.4900 -2.2867 19 6 -0.3166 -7.0714 -1.1688 20 6 0.8389 -7.3338 -3.4126 21 6 -0.2426 -7.3285 -4.4621 22 1 -1.1440 -6.7544 -4.3058 23 6 -0.0814 -8.0566 -5.6218 24 7 1.0160 -8.7560 -5.8119 25 14 -1.4222 -8.0507 -6.9224 26 1 -1.1788 -6.9413 -7.8792 27 1 -1.4106 -9.3445 -7.6512 28 1 -2.7430 -7.8613 -6.2708 29 1 -0.3633 0.0037 1.0276 30 1 -0.3634 0.8880 -0.5170 31 1 -0.3633 -0.8919 -0.5106 32 1 4.1178 2.1400 -0.0100 33 1 5.3692 0.0269 -0.0118 34 1 3.8427 -3.2397 0.0022 35 1 5.2886 -2.3842 -0.0064 36 1 -1.3578 -3.4156 -1.8777 37 1 -1.6303 -5.0022 -1.1183 38 1 -1.3468 -3.5672 -0.1042 39 1 0.3819 -7.4571 -0.4262 40 1 -0.9443 -6.3052 -0.7138 41 1 -0.9436 -7.8845 -1.5348 42 1 1.7629 -6.9457 -3.8412 43 1 1.0007 -8.3533 -3.0627 44 1 1.1296 -9.2679 -6.6279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830409126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:43 Heat of formation + Delta-G solvation = -132.648004 kcal Electronic energy + Delta-G solvation = -29589.980521 eV Core-core repulsion = 25229.284293 eV Total energy + Delta-G solvation = -4360.696229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.94240 -41.04527 -39.56387 -38.66332 -36.39566 -35.15508 -34.94853 -33.08461 -32.80132 -31.63091 -29.29670 -27.76808 -27.30100 -26.24649 -25.09693 -23.98479 -22.49991 -21.80220 -20.93015 -18.96285 -18.55573 -17.99400 -17.20959 -17.05366 -16.60174 -16.51240 -15.92448 -15.77665 -15.69476 -15.45968 -15.10469 -14.61295 -14.37907 -13.87937 -13.77766 -13.69712 -13.40442 -13.20486 -13.13553 -12.97101 -12.81495 -12.54354 -12.28085 -12.15906 -12.11568 -11.74661 -11.64074 -11.40828 -11.24854 -10.91046 -10.80246 -10.68335 -10.64530 -10.59822 -10.19436 -9.68826 -9.27968 -8.95586 -8.47779 -7.85331 -7.77436 -6.08961 -4.13838 0.65928 1.04135 1.87644 2.38612 3.18129 3.23123 3.29258 3.35536 3.38025 3.39104 3.79557 4.13320 4.30754 4.40596 4.44816 4.58232 4.76601 4.85070 4.92657 5.02613 5.06406 5.23766 5.26016 5.34028 5.38849 5.44323 5.58085 5.63112 5.67047 5.76510 5.82553 5.83587 5.89971 6.02136 6.21541 6.25250 6.44218 6.93043 6.96754 7.28207 7.32825 7.41066 7.55440 7.86796 8.16322 8.23917 8.80137 8.94770 9.51311 10.99300 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.002641 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.346506 B =10597.670297 C =10668.120102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.024 4.024 3 C 0.031 3.969 4 F -0.140 7.140 5 C -0.075 4.075 6 C -0.179 4.179 7 C 0.261 3.739 8 N -0.859 5.859 9 C -0.168 4.168 10 C 0.520 3.480 11 O -0.496 6.496 12 O -0.316 6.316 13 C 0.067 3.933 14 H 0.104 0.896 15 C -0.172 4.172 16 C 0.506 3.494 17 O -0.515 6.515 18 N -0.596 5.596 19 C 0.066 3.934 20 C 0.247 3.753 21 C -0.527 4.527 22 H 0.058 0.942 23 C 0.061 3.939 24 N -0.895 5.895 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.402 0.598 35 H 0.407 0.593 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 15.730 16.213 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.026 4.026 3 C 0.010 3.990 4 F -0.118 7.118 5 C -0.094 4.094 6 C -0.201 4.201 7 C 0.152 3.848 8 N -0.396 5.396 9 C -0.174 4.174 10 C 0.362 3.638 11 O -0.383 6.383 12 O -0.231 6.231 13 C 0.008 3.992 14 H 0.121 0.879 15 C -0.229 4.229 16 C 0.290 3.710 17 O -0.390 6.390 18 N -0.329 5.329 19 C -0.077 4.077 20 C 0.129 3.871 21 C -0.566 4.566 22 H 0.077 0.923 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.727 3.273 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.231 0.769 35 H 0.237 0.763 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.735 15.694 15.845 22.612 hybrid contribution -0.670 -0.401 -0.676 1.033 sum 3.065 15.293 15.168 21.757 Atomic orbital electron populations 1.20893 0.89638 1.04202 1.03500 1.19538 0.96754 0.90022 0.96245 1.16909 0.89732 0.80673 1.11683 1.91468 1.80153 1.45477 1.94735 1.21004 0.91949 0.99280 0.97182 1.20349 1.00127 0.89504 1.10153 1.17543 0.88911 0.87575 0.90797 1.42420 1.09618 1.05233 1.82283 1.18067 0.91265 0.90391 1.17715 1.20997 0.76067 0.84449 0.82285 1.90860 1.51356 1.63707 1.32418 1.86867 1.67489 1.35735 1.32962 1.22739 0.93243 0.83196 1.00018 0.87869 1.22319 0.92527 1.04450 1.03648 1.19753 0.80900 0.82730 0.87575 1.90724 1.41869 1.71258 1.35183 1.48084 1.54434 1.07844 1.22567 1.21984 0.96331 0.99908 0.89496 1.19351 0.96819 0.88719 0.82231 1.21407 1.03596 1.29055 1.02550 0.92334 1.24937 0.95942 0.95168 0.98035 1.69927 1.25955 1.30571 1.26933 0.86479 0.81840 0.77399 0.81600 1.20489 1.21126 1.19886 0.89830 0.89913 0.90773 0.84112 0.84200 0.76890 0.76339 0.90476 0.88927 0.91117 0.93383 0.91569 0.90194 0.93844 0.94603 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.43 36.01 0.34 -1.00 16 2 C -0.02 -0.29 5.92 -104.15 -0.62 -0.90 16 3 C 0.03 0.34 7.23 -39.49 -0.29 0.06 16 4 F -0.14 -1.55 16.45 2.25 0.04 -1.51 16 5 C -0.07 -0.66 10.00 -39.48 -0.39 -1.05 16 6 C -0.18 -1.55 9.88 -39.43 -0.39 -1.93 16 7 C 0.26 2.87 6.77 -83.57 -0.57 2.30 16 8 N -0.86 -8.13 8.99 32.56 0.29 -7.84 16 9 C -0.17 -2.19 5.77 -104.83 -0.60 -2.79 16 10 C 0.52 7.66 4.58 34.41 0.16 7.81 16 11 O -0.50 -7.75 16.37 -19.28 -0.32 -8.07 16 12 O -0.32 -5.27 9.47 -47.24 -0.45 -5.72 16 13 C 0.07 1.08 2.17 -27.89 -0.06 1.02 16 14 H 0.10 1.51 6.71 -51.92 -0.35 1.16 16 15 C -0.17 -2.32 9.15 37.16 0.34 -1.98 16 16 C 0.51 10.60 7.00 -10.99 -0.08 10.53 16 17 O -0.52 -13.20 16.18 -13.68 -0.22 -13.42 16 18 N -0.60 -12.35 2.86 -182.95 -0.52 -12.87 16 19 C 0.07 1.01 9.86 59.85 0.59 1.60 16 20 C 0.25 6.34 5.14 -5.19 -0.03 6.32 16 21 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 22 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 25 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.78 7.63 -51.93 -0.40 0.39 16 31 H 0.07 0.84 7.09 -51.93 -0.37 0.47 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.40 4.30 7.68 -40.82 -0.31 3.98 16 35 H 0.41 2.59 8.84 -40.82 -0.36 2.23 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.16 5.52 -51.93 -0.29 0.87 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.83 4.22 -51.93 -0.22 0.61 16 41 H 0.08 1.23 8.09 -51.92 -0.42 0.81 16 42 H 0.04 1.26 7.48 -51.93 -0.39 0.87 16 43 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 378.31 15.07 5.70 5.70 Total: -1.00 -34.90 378.31 -7.38 -42.28 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.60 Total: 3.81 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.01 Total: 6.55 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.51 Total: -46.25 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.98 Total: -27.21 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.90 -7.38 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830409126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.372 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds