Wall clock time and date at job start Tue Mar 31 2020 21:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37956 * 120.04933 * 2 1 4 4 F 1.35102 * 119.84516 * 0.02562 * 3 2 1 5 5 C 1.38762 * 120.30677 * 180.27838 * 3 2 1 6 6 C 1.38000 * 120.41223 * 359.76718 * 5 3 2 7 7 C 1.38893 * 120.09488 * 359.97438 * 6 5 3 8 8 N 1.38962 * 120.15116 * 180.02562 * 7 6 5 9 9 C 1.39784 * 120.05462 * 179.79504 * 2 1 3 10 10 C 1.47290 * 120.20235 * 359.96716 * 9 2 1 11 11 O 1.21520 * 120.00382 * 269.72924 * 10 9 2 12 12 O 1.34769 * 119.99534 * 89.73215 * 10 9 2 13 13 C 1.45199 * 117.00128 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.46832 * 329.99808 * 13 12 10 15 15 C 1.52998 * 109.47364 * 89.99539 * 13 12 10 16 16 C 1.50692 * 109.47544 * 210.00124 * 13 12 10 17 17 O 1.21285 * 119.99692 * 345.89898 * 16 13 12 18 18 N 1.34773 * 120.00412 * 165.90256 * 16 13 12 19 19 C 1.46497 * 119.99854 * 4.20479 * 18 16 13 20 20 C 1.46507 * 120.00281 * 184.48654 * 18 16 13 21 21 C 1.50700 * 109.46883 * 269.72184 * 20 18 16 22 22 H 1.08002 * 119.99875 * 359.97438 * 21 20 18 23 23 C 1.37874 * 120.00033 * 179.97438 * 21 20 18 24 24 N 1.31517 * 119.99760 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00176 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46909 * 89.99933 * 25 23 21 27 27 H 1.48499 * 109.46949 * 209.99795 * 25 23 21 28 28 H 1.48491 * 109.47036 * 330.00430 * 25 23 21 29 29 H 1.08998 * 109.47115 * 270.20502 * 1 2 3 30 30 H 1.08997 * 109.47824 * 30.20744 * 1 2 3 31 31 H 1.09004 * 109.47044 * 150.21181 * 1 2 3 32 32 H 1.08000 * 119.79282 * 179.73965 * 5 3 2 33 33 H 1.07993 * 119.95246 * 179.97438 * 6 5 3 34 34 H 0.96999 * 119.99843 * 179.97438 * 8 7 6 35 35 H 0.97003 * 120.00212 * 359.97438 * 8 7 6 36 36 H 1.09001 * 109.46670 * 52.29790 * 15 13 12 37 37 H 1.08998 * 109.47411 * 172.29653 * 15 13 12 38 38 H 1.08997 * 109.47274 * 292.30077 * 15 13 12 39 39 H 1.08999 * 109.47510 * 268.49645 * 19 18 16 40 40 H 1.09000 * 109.46885 * 28.50006 * 19 18 16 41 41 H 1.09009 * 109.47102 * 148.49479 * 19 18 16 42 42 H 1.09001 * 109.47077 * 29.71870 * 20 18 16 43 43 H 1.09000 * 109.47311 * 149.71942 * 20 18 16 44 44 H 0.96998 * 119.99981 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1941 0.0000 4 9 1.5202 2.3629 0.0005 5 6 3.5854 1.2004 -0.0058 6 6 4.2893 0.0134 -0.0068 7 6 3.6110 -1.1986 -0.0015 8 7 4.3187 -2.3945 -0.0020 9 6 2.2071 -1.2099 0.0043 10 6 1.4764 -2.4887 0.0096 11 8 1.1797 -3.0148 1.0642 12 8 1.1368 -3.0755 -1.1551 13 6 0.4173 -4.3341 -1.0741 14 1 0.7103 -4.8623 -0.1666 15 6 -1.0876 -4.0601 -1.0412 16 6 0.7477 -5.1801 -2.2765 17 8 1.2988 -4.6821 -3.2353 18 7 0.4307 -6.4900 -2.2867 19 6 -0.3166 -7.0714 -1.1688 20 6 0.8389 -7.3338 -3.4126 21 6 -0.2426 -7.3285 -4.4621 22 1 -1.1440 -6.7544 -4.3058 23 6 -0.0814 -8.0566 -5.6218 24 7 1.0160 -8.7560 -5.8119 25 14 -1.4222 -8.0507 -6.9224 26 1 -1.1788 -6.9413 -7.8792 27 1 -1.4106 -9.3445 -7.6512 28 1 -2.7430 -7.8613 -6.2708 29 1 -0.3633 0.0037 1.0276 30 1 -0.3634 0.8880 -0.5170 31 1 -0.3633 -0.8919 -0.5106 32 1 4.1178 2.1400 -0.0100 33 1 5.3692 0.0269 -0.0118 34 1 3.8427 -3.2397 0.0022 35 1 5.2886 -2.3842 -0.0064 36 1 -1.3578 -3.4156 -1.8777 37 1 -1.6303 -5.0022 -1.1183 38 1 -1.3468 -3.5672 -0.1042 39 1 0.3819 -7.4571 -0.4262 40 1 -0.9443 -6.3052 -0.7138 41 1 -0.9436 -7.8845 -1.5348 42 1 1.7629 -6.9457 -3.8412 43 1 1.0007 -8.3533 -3.0627 44 1 1.1296 -9.2679 -6.6279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830409126.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:42 Heat of formation + Delta-G solvation = -154.693425 kcal Electronic energy + Delta-G solvation = -29590.936483 eV Core-core repulsion = 25229.284293 eV Total energy + Delta-G solvation = -4361.652190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.75986 -42.18723 -40.85962 -39.85837 -37.64782 -36.71075 -35.93735 -34.90218 -33.81475 -33.00017 -30.18581 -29.61906 -28.07755 -27.70010 -26.28185 -25.49454 -24.01265 -22.59704 -22.04439 -20.50271 -19.61764 -18.84130 -18.70610 -18.41538 -17.86046 -17.80727 -17.26031 -16.99626 -16.67619 -16.59938 -16.31075 -16.13165 -15.97155 -14.98169 -14.84363 -14.58999 -14.53908 -14.33207 -14.21456 -14.01653 -13.91280 -13.73307 -13.66442 -13.62120 -13.37255 -13.11855 -13.02272 -12.90081 -12.65237 -12.53826 -12.39326 -12.19688 -12.01582 -11.74592 -11.69387 -11.40605 -10.66297 -10.65147 -10.07352 -9.54162 -8.63862 -8.24227 -6.38390 -0.14748 0.24608 0.76058 1.21383 1.36899 1.40056 1.49000 1.58241 2.27568 2.40639 2.46137 2.64756 3.06206 3.28151 3.35626 3.46214 3.57167 3.70679 3.77915 3.80010 4.12009 4.18596 4.30542 4.39379 4.52159 4.54931 4.57093 4.64266 4.71180 4.82558 4.89976 4.91789 4.96482 5.08279 5.10253 5.13184 5.15027 5.18393 5.50229 5.68686 5.76344 6.02439 6.16577 6.37071 6.58120 6.63478 6.70157 7.18345 7.34804 8.83298 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017330 B = 0.002641 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.346506 B =10597.670297 C =10668.120102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.038 4.038 3 C 0.017 3.983 4 F -0.143 7.143 5 C -0.064 4.064 6 C -0.170 4.170 7 C 0.251 3.749 8 N -0.855 5.855 9 C -0.202 4.202 10 C 0.528 3.472 11 O -0.508 6.508 12 O -0.335 6.335 13 C 0.077 3.923 14 H 0.124 0.876 15 C -0.167 4.167 16 C 0.500 3.500 17 O -0.575 6.575 18 N -0.599 5.599 19 C 0.059 3.941 20 C 0.261 3.739 21 C -0.543 4.543 22 H 0.056 0.944 23 C 0.008 3.992 24 N -0.928 5.928 25 Si 0.967 3.033 26 H -0.282 1.282 27 H -0.275 1.275 28 H -0.260 1.260 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.395 0.605 35 H 0.421 0.579 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.078 0.922 42 H -0.001 1.001 43 H 0.032 0.968 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.012 16.831 17.500 24.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.040 4.040 3 C -0.004 4.004 4 F -0.122 7.122 5 C -0.083 4.083 6 C -0.192 4.192 7 C 0.142 3.858 8 N -0.392 5.392 9 C -0.209 4.209 10 C 0.372 3.628 11 O -0.396 6.396 12 O -0.251 6.251 13 C 0.018 3.982 14 H 0.141 0.859 15 C -0.224 4.224 16 C 0.287 3.713 17 O -0.454 6.454 18 N -0.331 5.331 19 C -0.082 4.082 20 C 0.140 3.860 21 C -0.581 4.581 22 H 0.074 0.926 23 C -0.191 4.191 24 N -0.568 5.568 25 Si 0.791 3.209 26 H -0.208 1.208 27 H -0.200 1.200 28 H -0.184 1.184 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.191 0.809 33 H 0.193 0.807 34 H 0.223 0.777 35 H 0.253 0.747 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.017 0.983 43 H 0.050 0.950 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.257 16.783 17.189 24.243 hybrid contribution -0.428 -0.716 -1.033 1.328 sum 2.828 16.067 16.157 22.960 Atomic orbital electron populations 1.20911 0.89325 1.03972 1.04009 1.19694 0.97332 0.90261 0.96715 1.17110 0.90681 0.80195 1.12398 1.91456 1.80410 1.45476 1.94837 1.21399 0.91136 1.00741 0.95073 1.20757 1.01767 0.88316 1.08382 1.17844 0.88487 0.88831 0.90674 1.42455 1.10406 1.04590 1.81766 1.18176 0.92253 0.89738 1.20697 1.21271 0.75463 0.84662 0.81421 1.90830 1.52001 1.64273 1.32525 1.86877 1.67932 1.35817 1.34471 1.22630 0.94897 0.82936 0.97692 0.85863 1.22341 0.90319 1.05163 1.04609 1.20597 0.79521 0.82841 0.88386 1.90683 1.44475 1.72460 1.37797 1.48057 1.54614 1.07768 1.22659 1.22316 0.96923 1.00811 0.88170 1.18849 0.94659 0.88885 0.83633 1.21688 1.03884 1.28994 1.03576 0.92621 1.25840 0.98277 0.94696 1.00251 1.70040 1.27771 1.31226 1.27729 0.85428 0.79352 0.77545 0.78584 1.20811 1.19962 1.18436 0.88948 0.89134 0.91920 0.80930 0.80738 0.77737 0.74691 0.91470 0.87690 0.88596 0.90715 0.88370 0.90351 0.98297 0.94978 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.43 71.24 0.67 -1.98 16 2 C -0.04 -0.90 5.92 -19.56 -0.12 -1.02 16 3 C 0.02 0.35 7.23 22.33 0.16 0.51 16 4 F -0.14 -2.99 16.45 44.97 0.74 -2.25 16 5 C -0.06 -0.96 10.00 22.34 0.22 -0.74 16 6 C -0.17 -2.49 9.88 22.37 0.22 -2.27 16 7 C 0.25 5.23 6.77 38.69 0.26 5.50 16 8 N -0.86 -15.44 8.99 -50.90 -0.46 -15.90 16 9 C -0.20 -5.20 5.77 -20.00 -0.12 -5.31 16 10 C 0.53 15.47 4.58 70.20 0.32 15.79 16 11 O -0.51 -15.49 16.37 19.77 0.32 -15.17 16 12 O -0.34 -11.32 9.47 -50.52 -0.48 -11.80 16 13 C 0.08 2.44 2.17 29.84 0.06 2.50 16 14 H 0.12 3.40 6.71 -2.38 -0.02 3.39 16 15 C -0.17 -4.25 9.15 71.98 0.66 -3.59 16 16 C 0.50 21.37 7.00 87.65 0.61 21.99 16 17 O -0.57 -30.89 16.18 15.34 0.25 -30.64 16 18 N -0.60 -25.09 2.86 -851.12 -2.43 -27.53 16 19 C 0.06 1.71 9.86 127.77 1.26 2.96 16 20 C 0.26 13.86 5.14 85.63 0.44 14.30 16 21 C -0.54 -30.94 9.39 25.60 0.24 -30.69 16 22 H 0.06 3.13 7.81 -2.91 -0.02 3.10 16 23 C 0.01 0.48 5.46 84.65 0.46 0.95 16 24 N -0.93 -55.61 13.29 21.45 0.28 -55.33 16 25 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.69 7.63 -2.39 -0.02 1.67 16 31 H 0.06 1.43 7.09 -2.39 -0.02 1.42 16 32 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 33 H 0.18 1.28 8.06 -2.91 -0.02 1.25 16 34 H 0.40 8.41 7.68 -92.71 -0.71 7.69 16 35 H 0.42 4.75 8.84 -92.71 -0.82 3.93 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 2.37 5.52 -2.39 -0.01 2.35 16 38 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.10 2.19 4.22 -2.39 -0.01 2.18 16 41 H 0.08 2.31 8.09 -2.38 -0.02 2.29 16 42 H 0.00 -0.07 7.48 -2.39 -0.02 -0.09 16 43 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 44 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -78.89 378.31 5.17 -73.73 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -0.46 Total: 19.39 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 5.37 Total: 18.90 kcal Atomic # 7 Polarization: -96.15 SS G_CDS: -2.60 Total: -98.76 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: 0.09 Total: -57.61 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.74 Total: -2.25 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -78.89 5.17 -73.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830409126.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.964 kcal (2) G-P(sol) polarization free energy of solvation -78.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds