Wall clock time and date at job start Tue Mar 31 2020 20:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86796 * 120.00105 * 2 1 4 4 H 1.48496 * 109.46898 * 269.99964 * 3 2 1 5 5 H 1.48501 * 109.47100 * 29.99809 * 3 2 1 6 6 H 1.48501 * 109.47317 * 149.99728 * 3 2 1 7 7 C 1.38640 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99790 * 180.02562 * 7 2 1 9 9 O 1.34807 * 120.00241 * 359.97438 * 7 2 1 10 10 C 1.35778 * 117.00063 * 185.37553 * 9 7 2 11 11 C 1.38741 * 120.08779 * 5.63171 * 10 9 7 12 12 C 1.38342 * 119.97924 * 179.97438 * 11 10 9 13 13 F 1.35102 * 119.92505 * 180.02562 * 12 11 10 14 14 C 1.38543 * 120.14841 * 0.02562 * 12 11 10 15 15 C 1.38198 * 120.17833 * 359.97438 * 14 12 11 16 16 C 1.38700 * 120.01748 * 0.02562 * 15 14 12 17 17 N 1.40143 * 120.07125 * 179.97438 * 16 15 14 18 18 C 1.34773 * 120.00102 * 25.55694 * 17 16 15 19 19 O 1.21598 * 120.00050 * 356.08970 * 18 17 16 20 20 N 1.34767 * 120.00116 * 176.09447 * 18 17 16 21 21 C 1.46498 * 120.00258 * 179.97438 * 20 18 17 22 22 H 1.09004 * 110.01824 * 325.69732 * 21 20 18 23 23 C 1.54265 * 110.03445 * 87.09493 * 21 20 18 24 24 C 1.54886 * 104.19831 * 142.89547 * 23 21 20 25 25 C 1.54883 * 102.74774 * 322.05567 * 24 23 21 26 26 C 1.53878 * 110.03465 * 204.31100 * 21 20 18 27 27 H 1.08993 * 110.03537 * 121.42929 * 26 21 20 28 28 C 1.52999 * 110.03394 * 359.97438 * 26 21 20 29 29 O 1.42897 * 109.47647 * 175.00141 * 28 26 21 30 30 H 0.96997 * 119.99920 * 0.02562 * 1 2 3 31 31 H 1.08007 * 120.01053 * 359.95625 * 11 10 9 32 32 H 1.07999 * 119.91371 * 180.02562 * 14 12 11 33 33 H 1.07997 * 119.99235 * 180.27591 * 15 14 12 34 34 H 0.96995 * 119.99458 * 205.54781 * 17 16 15 35 35 H 0.97007 * 120.00004 * 359.97438 * 20 18 17 36 36 H 1.09002 * 110.48116 * 261.57580 * 23 21 20 37 37 H 1.09003 * 110.48526 * 24.07702 * 23 21 20 38 38 H 1.09003 * 110.75237 * 80.37276 * 24 23 21 39 39 H 1.09000 * 110.75104 * 203.73912 * 24 23 21 40 40 H 1.09002 * 110.48342 * 156.62412 * 25 24 23 41 41 H 1.09002 * 110.48896 * 279.13201 * 25 24 23 42 42 H 1.09007 * 109.47129 * 295.00265 * 28 26 21 43 43 H 1.09004 * 109.46862 * 54.99668 * 28 26 21 44 44 H 0.96695 * 114.00471 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3681 0.0016 10 6 2.0698 -3.5041 0.1154 11 6 3.4366 -3.4286 0.3410 12 6 4.1832 -4.5875 0.4571 13 9 5.5140 -4.5127 0.6773 14 6 3.5691 -5.8246 0.3481 15 6 2.2080 -5.9072 0.1234 16 6 1.4527 -4.7499 0.0059 17 7 0.0725 -4.8324 -0.2225 18 6 -0.6111 -5.9262 0.1683 19 8 -0.0199 -6.8711 0.6543 20 7 -1.9498 -5.9728 0.0202 21 6 -2.6928 -7.1620 0.4445 22 1 -2.0932 -8.0565 0.2756 23 6 -3.0638 -7.0486 1.9375 24 6 -4.4746 -7.6813 2.0275 25 6 -5.1479 -7.2031 0.7172 26 6 -4.0174 -7.2610 -0.3324 27 1 -4.0610 -8.2038 -0.8775 28 6 -4.1441 -6.0861 -1.3042 29 8 -5.3192 -6.2510 -2.1004 30 1 -0.4850 0.8400 -0.0004 31 1 3.9178 -2.4653 0.4256 32 1 4.1555 -6.7269 0.4398 33 1 1.7317 -6.8732 0.0434 34 1 -0.3908 -4.1021 -0.6617 35 1 -2.4215 -5.2189 -0.3672 36 1 -2.3556 -7.6067 2.5500 37 1 -3.0919 -6.0033 2.2453 38 1 -4.4091 -8.7691 2.0536 39 1 -5.0120 -7.3047 2.8978 40 1 -5.9608 -7.8740 0.4392 41 1 -5.5170 -6.1835 0.8281 42 1 -4.2142 -5.1551 -0.7416 43 1 -3.2679 -6.0541 -1.9518 44 1 -5.4636 -5.5407 -2.7404 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836456449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:47 Heat of formation + Delta-G solvation = -120.791167 kcal Electronic energy + Delta-G solvation = -29409.299284 eV Core-core repulsion = 25049.117206 eV Total energy + Delta-G solvation = -4360.182078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.22437 -40.59042 -39.37630 -38.31761 -36.50947 -36.17673 -34.09932 -33.57681 -32.41750 -30.26133 -29.40722 -28.66094 -27.11340 -25.50314 -24.72587 -22.67457 -21.81953 -20.99865 -20.66534 -19.49844 -18.65261 -18.33173 -17.79375 -17.12391 -16.76952 -15.97149 -15.70387 -15.30493 -15.24374 -15.00962 -14.84179 -14.74780 -14.40755 -14.30088 -13.88745 -13.63434 -13.59664 -13.52669 -13.17613 -12.70930 -12.35564 -12.20961 -12.02316 -11.69530 -11.50989 -11.38511 -11.23906 -11.14512 -10.97836 -10.81808 -10.77244 -10.73013 -10.55825 -10.18700 -9.86098 -9.81366 -9.43434 -8.99889 -8.97176 -7.85926 -7.05282 -6.62272 -4.19731 1.87453 2.13702 2.82464 3.04745 3.06721 3.10978 3.41014 3.83014 3.85682 4.36066 4.37048 4.40761 4.45087 4.78301 4.86081 4.96171 5.03384 5.10073 5.12706 5.19599 5.31663 5.37556 5.46347 5.48006 5.59485 5.62577 5.76238 5.79976 5.90069 6.02403 6.03978 6.11349 6.18352 6.21674 6.51163 6.67767 6.69364 6.92121 6.97643 7.07387 7.13210 7.27721 7.36765 7.68589 7.82353 8.22085 8.79618 8.84661 9.45689 10.55066 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009999 B = 0.003380 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.574142 B = 8281.504034 C =10349.975618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.391 4.391 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.153 3.847 11 C -0.256 4.256 12 C 0.123 3.877 13 F -0.152 7.152 14 C -0.225 4.225 15 C -0.066 4.066 16 C 0.081 3.919 17 N -0.662 5.662 18 C 0.704 3.296 19 O -0.582 6.582 20 N -0.745 5.745 21 C 0.169 3.831 22 H 0.096 0.904 23 C -0.137 4.137 24 C -0.126 4.126 25 C -0.112 4.112 26 C -0.099 4.099 27 H 0.089 0.911 28 C 0.076 3.924 29 O -0.572 6.572 30 H 0.271 0.729 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.158 0.842 34 H 0.412 0.588 35 H 0.397 0.603 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.842 -10.308 -1.542 13.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.097 3.903 11 C -0.277 4.277 12 C 0.103 3.897 13 F -0.131 7.131 14 C -0.245 4.245 15 C -0.087 4.087 16 C -0.014 4.014 17 N -0.308 5.308 18 C 0.405 3.595 19 O -0.461 6.461 20 N -0.403 5.403 21 C 0.063 3.937 22 H 0.114 0.886 23 C -0.176 4.176 24 C -0.164 4.164 25 C -0.149 4.149 26 C -0.118 4.118 27 H 0.107 0.893 28 C -0.002 4.002 29 O -0.378 6.378 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.175 0.825 34 H 0.247 0.753 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -8.802 -11.468 -0.756 14.476 hybrid contribution 0.458 2.290 -0.583 2.407 sum -8.344 -9.178 -1.339 12.476 Atomic orbital electron populations 1.70005 1.05929 1.27921 1.45761 1.25265 0.95897 0.98808 0.96202 0.85690 0.79052 0.79813 0.78843 1.19771 1.20190 1.19053 1.21334 0.91959 0.80435 1.52984 0.88881 1.83917 1.33830 1.11281 1.78498 1.18726 0.89847 0.86885 0.94807 1.20827 0.93911 0.98353 1.14599 1.17487 0.76636 0.94331 1.01230 1.91407 1.31923 1.97365 1.92433 1.20543 0.95264 0.95519 1.13205 1.21096 0.91872 0.98259 0.97436 1.16732 0.81818 0.91252 1.11630 1.42221 1.07039 1.20161 1.61383 1.15904 0.81545 0.83241 0.78834 1.90793 1.67603 1.36770 1.50947 1.45466 1.05553 1.20516 1.68735 1.21452 0.90590 0.88404 0.93222 0.88569 1.22842 0.96685 1.01964 0.96062 1.22495 0.95687 1.00496 0.97693 1.22371 0.96905 1.01865 0.93785 1.22042 0.94570 0.99383 0.95795 0.89252 1.22280 0.87522 0.97504 0.92931 1.86449 1.45284 1.51723 1.54318 0.91897 0.84005 0.86001 0.82485 0.75261 0.76627 0.90745 0.90888 0.91266 0.91281 0.91274 0.91333 0.93216 0.92907 0.77248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.17 13.67 55.48 0.76 -22.41 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.39 -10.20 9.44 30.88 0.29 -9.91 16 8 H 0.09 2.29 5.29 -52.48 -0.28 2.02 16 9 O -0.17 -4.42 9.18 0.03 0.00 -4.42 16 10 C 0.15 3.50 6.66 -38.94 -0.26 3.24 16 11 C -0.26 -5.59 9.11 -39.36 -0.36 -5.95 16 12 C 0.12 2.48 7.29 -39.43 -0.29 2.19 16 13 F -0.15 -2.94 17.26 2.25 0.04 -2.91 16 14 C -0.22 -4.22 10.02 -39.48 -0.40 -4.62 16 15 C -0.07 -1.28 8.80 -39.43 -0.35 -1.63 16 16 C 0.08 1.67 6.47 -83.43 -0.54 1.13 16 17 N -0.66 -11.97 5.29 -14.07 -0.07 -12.05 16 18 C 0.70 11.78 8.45 -86.93 -0.73 11.04 16 19 O -0.58 -11.12 12.93 5.28 0.07 -11.06 16 20 N -0.74 -9.42 4.41 -57.58 -0.25 -9.67 16 21 C 0.17 1.89 3.21 -66.81 -0.21 1.67 16 22 H 0.10 1.18 7.59 -51.93 -0.39 0.79 16 23 C -0.14 -1.49 6.53 -25.07 -0.16 -1.66 16 24 C -0.13 -1.09 6.91 -24.74 -0.17 -1.26 16 25 C -0.11 -0.98 6.22 -25.02 -0.16 -1.13 16 26 C -0.10 -0.93 3.19 -89.44 -0.29 -1.21 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 C 0.08 0.68 4.96 37.16 0.18 0.86 16 29 O -0.57 -5.22 13.51 -35.23 -0.48 -5.70 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.14 3.10 5.71 -52.48 -0.30 2.80 16 32 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.16 3.00 5.50 -52.49 -0.29 2.71 16 34 H 0.41 7.12 8.38 -40.82 -0.34 6.78 16 35 H 0.40 4.34 5.88 -40.82 -0.24 4.10 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.62 7.77 -51.93 -0.40 0.22 16 42 H 0.05 0.42 7.12 -51.92 -0.37 0.05 16 43 H 0.05 0.48 7.41 -51.93 -0.38 0.09 16 44 H 0.38 1.97 9.12 45.56 0.42 2.38 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -30.46 364.79 -7.67 -38.13 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.53 Total: -6.22 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.43 Total: -44.13 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.41 Total: -21.18 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.46 -7.67 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836456449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.659 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds