Wall clock time and date at job start Tue Mar 31 2020 20:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 119.99979 * 2 1 4 4 H 1.48498 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46920 * 300.00439 * 3 2 1 6 6 H 1.48500 * 109.47351 * 60.00386 * 3 2 1 7 7 C 1.39937 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00184 * 197.88624 * 7 2 1 9 9 C 1.41441 * 119.99665 * 17.89046 * 7 2 1 10 10 C 1.40789 * 120.17139 * 204.43938 * 9 7 2 11 11 C 1.37719 * 120.04895 * 180.02562 * 10 9 7 12 12 C 1.38354 * 120.42006 * 359.74691 * 11 10 9 13 13 C 1.39928 * 120.35294 * 0.51270 * 12 11 10 14 14 C 1.47770 * 120.03522 * 179.76750 * 13 12 11 15 15 O 1.21461 * 120.00074 * 179.72315 * 14 13 12 16 16 O 1.34709 * 119.99546 * 359.71804 * 14 13 12 17 17 C 1.45207 * 116.99670 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.46779 * 180.02562 * 17 16 14 19 19 C 1.53934 * 113.73242 * 175.00366 * 18 17 16 20 20 N 1.47957 * 86.30387 * 138.02097 * 19 18 17 21 21 C 1.38995 * 111.00493 * 222.46916 * 20 19 18 22 22 C 1.39137 * 119.71044 * 179.97438 * 21 20 19 23 23 C 1.38296 * 119.10095 * 180.02562 * 22 21 20 24 24 C 1.38885 * 118.50454 * 0.02562 * 23 22 21 25 25 C 1.38025 * 119.32697 * 359.97438 * 24 23 22 26 26 N 1.31971 * 120.85993 * 359.72434 * 25 24 23 27 27 C 1.48186 * 90.67459 * 335.41028 * 20 19 18 28 28 C 1.39089 * 119.93881 * 359.48511 * 13 12 11 29 29 H 0.97001 * 120.00230 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.97640 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.79026 * 180.02562 * 11 10 9 32 32 H 1.08001 * 119.82735 * 180.27312 * 12 11 10 33 33 H 1.09002 * 109.46264 * 60.00712 * 17 16 14 34 34 H 1.08995 * 109.47396 * 300.00689 * 17 16 14 35 35 H 1.09001 * 112.93885 * 43.43444 * 18 17 16 36 36 H 1.09004 * 113.76239 * 252.39812 * 19 18 17 37 37 H 1.09007 * 113.75913 * 23.65005 * 19 18 17 38 38 H 1.08004 * 120.44662 * 0.02562 * 22 21 20 39 39 H 1.07995 * 120.75150 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.33397 * 180.02562 * 24 23 22 41 41 H 1.08008 * 119.56858 * 179.97438 * 25 24 23 42 42 H 1.08997 * 113.65492 * 270.26677 * 27 20 19 43 43 H 1.09007 * 113.92413 * 138.94820 * 27 20 19 44 44 H 1.07995 * 120.21270 * 180.23343 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8836 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2867 9 6 1.3521 -2.4070 -0.3774 10 6 1.8264 -3.6500 0.0832 11 6 1.1861 -4.8121 -0.2857 12 6 0.0720 -4.7684 -1.1049 13 6 -0.4109 -3.5429 -1.5770 14 6 -1.5982 -3.5048 -2.4558 15 8 -2.0199 -2.4402 -2.8612 16 8 -2.2129 -4.6507 -2.8074 17 6 -3.3737 -4.5375 -3.6725 18 6 -3.9329 -5.9322 -3.9604 19 6 -5.2408 -5.9198 -4.7721 20 7 -4.6679 -7.0528 -5.5318 21 6 -4.9078 -6.9117 -6.8936 22 6 -4.4450 -7.8799 -7.7792 23 6 -4.6903 -7.7266 -9.1316 24 6 -5.3925 -6.6056 -9.5550 25 6 -5.8223 -5.6846 -8.6212 26 7 -5.5789 -5.8597 -7.3359 27 6 -3.2956 -6.6147 -5.1842 28 6 0.2243 -2.3600 -1.2136 29 1 -0.4850 0.8400 0.0004 30 1 2.6935 -3.6922 0.7257 31 1 1.5533 -5.7633 0.0704 32 1 -0.4253 -5.6853 -1.3847 33 1 -3.0835 -4.0615 -4.6091 34 1 -4.1367 -3.9350 -3.1798 35 1 -3.9727 -6.5653 -3.0741 36 1 -6.1227 -6.1836 -4.1882 37 1 -5.3796 -5.0173 -5.3676 38 1 -3.9016 -8.7394 -7.4155 39 1 -4.3437 -8.4619 -9.8425 40 1 -5.6008 -6.4566 -10.6041 41 1 -6.3683 -4.8112 -8.9461 42 1 -2.8646 -5.9165 -5.9016 43 1 -2.6217 -7.4327 -4.9294 44 1 -0.1469 -1.4115 -1.5724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842889926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:54 Heat of formation + Delta-G solvation = 14.695334 kcal Electronic energy + Delta-G solvation = -27218.860813 eV Core-core repulsion = 23295.323096 eV Total energy + Delta-G solvation = -3923.537717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45729 -39.80733 -39.01234 -37.36292 -35.73552 -33.77350 -32.88226 -32.43095 -30.45739 -29.54206 -29.18284 -26.57556 -25.78444 -25.25636 -23.66506 -23.03553 -21.91028 -21.00070 -20.06746 -19.58027 -17.89906 -17.72923 -16.86631 -16.70254 -16.24619 -16.00321 -15.85191 -15.61400 -14.98727 -14.78284 -14.57095 -14.51189 -13.70614 -13.58640 -13.37808 -13.26013 -13.02453 -12.71505 -12.59719 -12.42918 -12.23596 -11.72494 -11.51042 -11.34911 -11.23269 -11.14277 -11.01430 -10.77434 -10.52647 -10.32777 -10.20530 -10.19481 -10.14321 -9.74644 -9.72768 -9.48421 -9.26160 -8.71807 -7.76101 -7.57452 -6.84825 -4.45480 0.74697 0.93295 1.96850 2.75639 3.05644 3.09898 3.11435 3.12003 3.23216 3.54410 3.58796 3.88812 3.96796 4.29670 4.47750 4.54243 4.56383 4.75039 4.76248 4.83292 5.05132 5.13891 5.20218 5.35944 5.40512 5.49742 5.50401 5.52993 5.53383 5.58860 5.75504 5.81474 5.88547 6.04492 6.13101 6.22623 6.38968 6.62310 6.85323 6.91400 6.93654 6.98058 7.15253 7.29379 7.61481 7.66718 7.73795 7.89325 8.08588 8.42683 8.54685 8.75231 8.77256 10.10506 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.002052 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.465543 B =13641.705969 C =14352.787366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.104 4.104 12 C -0.193 4.193 13 C -0.115 4.115 14 C 0.511 3.489 15 O -0.518 6.518 16 O -0.354 6.354 17 C 0.075 3.925 18 C -0.114 4.114 19 C 0.025 3.975 20 N -0.438 5.438 21 C 0.276 3.724 22 C -0.166 4.166 23 C -0.062 4.062 24 C -0.193 4.193 25 C 0.119 3.881 26 N -0.514 5.514 27 C 0.026 3.974 28 C -0.090 4.090 29 H 0.284 0.716 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.157 0.843 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 -12.068 -14.607 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.092 3.908 10 C -0.221 4.221 11 C -0.122 4.122 12 C -0.213 4.213 13 C -0.116 4.116 14 C 0.359 3.641 15 O -0.408 6.408 16 O -0.272 6.272 17 C 0.000 4.000 18 C -0.133 4.133 19 C -0.103 4.103 20 N -0.157 5.157 21 C 0.045 3.955 22 C -0.188 4.188 23 C -0.088 4.088 24 C -0.214 4.214 25 C -0.039 4.039 26 N -0.227 5.227 27 C -0.100 4.100 28 C -0.110 4.110 29 H 0.095 0.905 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.174 0.826 42 H 0.095 0.905 43 H 0.121 0.879 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.482 -11.659 -13.976 21.003 hybrid contribution 0.544 0.867 -0.986 1.421 sum -9.938 -10.791 -14.962 20.954 Atomic orbital electron populations 1.69786 1.07615 1.29733 1.33934 1.25973 0.94777 1.01626 0.92250 0.86224 0.80900 0.80743 0.78699 1.18292 1.19570 1.19884 1.19601 0.98295 0.90934 1.39998 0.89893 1.17553 0.91146 0.92633 0.89438 1.21188 1.03205 0.92703 1.05012 1.20514 0.96124 0.96920 0.98673 1.20562 1.00112 0.95320 1.05324 1.18837 0.94929 0.95904 1.01929 1.21886 0.83060 0.80905 0.78285 1.90764 1.65179 1.31209 1.53633 1.86596 1.41880 1.36114 1.62564 1.22887 0.86794 0.96363 0.93920 1.23059 0.95378 0.96092 0.98756 1.23933 0.97279 0.94415 0.94687 1.66192 1.08234 1.39066 1.02210 1.20523 0.93251 0.89669 0.92024 1.21633 1.03480 1.00410 0.93242 1.21525 0.94888 0.96917 0.95464 1.22071 1.01649 0.96347 1.01324 1.22591 0.95581 0.98165 0.87525 1.67604 1.16261 1.20934 1.17902 1.24127 0.89995 0.99728 0.96195 1.21659 0.96568 0.96039 0.96713 0.90453 0.88345 0.88522 0.87828 0.91509 0.90842 0.86551 0.88574 0.87841 0.84426 0.84596 0.84755 0.82614 0.90468 0.87877 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.55 10.96 55.55 0.61 -19.94 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 18.52 29.60 -169.99 -5.03 13.49 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -11.88 9.05 -37.73 -0.34 -12.23 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 9 C 0.09 2.47 5.57 -106.87 -0.60 1.88 16 10 C -0.20 -4.71 9.78 -38.81 -0.38 -5.09 16 11 C -0.10 -2.22 10.01 -39.73 -0.40 -2.62 16 12 C -0.19 -4.21 9.62 -38.91 -0.37 -4.59 16 13 C -0.11 -2.75 5.87 -105.05 -0.62 -3.37 16 14 C 0.51 11.44 7.90 34.63 0.27 11.71 16 15 O -0.52 -12.68 16.12 -19.24 -0.31 -12.99 16 16 O -0.35 -6.51 9.46 -40.52 -0.38 -6.89 16 17 C 0.08 1.10 5.33 37.16 0.20 1.30 16 18 C -0.11 -1.31 4.21 -89.68 -0.38 -1.68 16 19 C 0.02 0.27 7.21 -2.77 -0.02 0.25 16 20 N -0.44 -4.89 6.25 -175.75 -1.10 -5.99 16 21 C 0.28 3.09 5.89 -155.03 -0.91 2.18 16 22 C -0.17 -1.53 9.95 -39.23 -0.39 -1.92 16 23 C -0.06 -0.46 10.17 -39.32 -0.40 -0.86 16 24 C -0.19 -1.39 10.10 -39.42 -0.40 -1.79 16 25 C 0.12 1.05 11.17 -17.57 -0.20 0.85 16 26 N -0.51 -5.84 8.21 -12.44 -0.10 -5.94 16 27 C 0.03 0.28 7.44 -2.64 -0.02 0.26 16 28 C -0.09 -2.39 8.24 -38.42 -0.32 -2.70 16 29 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 30 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 31 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.10 2.01 7.59 -52.49 -0.40 1.61 16 33 H 0.07 0.99 7.83 -51.93 -0.41 0.58 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.10 1.20 6.63 -51.93 -0.34 0.86 16 38 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 41 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 42 H 0.08 0.88 7.66 -51.93 -0.40 0.48 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.14 3.82 5.74 -52.49 -0.30 3.52 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -30.19 377.11 -11.61 -41.80 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.63 Total: 7.48 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -5.35 Total: -16.70 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: -0.59 Total: -31.87 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.69 Total: -19.88 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.19 -11.61 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842889926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.495 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds