Wall clock time and date at job start Tue Mar 31 2020 20:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86802 * 119.99979 * 2 1 4 4 H 1.48498 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46920 * 300.00439 * 3 2 1 6 6 H 1.48500 * 109.47351 * 60.00386 * 3 2 1 7 7 C 1.39937 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00184 * 197.88624 * 7 2 1 9 9 C 1.41441 * 119.99665 * 17.89046 * 7 2 1 10 10 C 1.40789 * 120.17139 * 204.43938 * 9 7 2 11 11 C 1.37719 * 120.04895 * 180.02562 * 10 9 7 12 12 C 1.38354 * 120.42006 * 359.74691 * 11 10 9 13 13 C 1.39928 * 120.35294 * 0.51270 * 12 11 10 14 14 C 1.47770 * 120.03522 * 179.76750 * 13 12 11 15 15 O 1.21461 * 120.00074 * 179.72315 * 14 13 12 16 16 O 1.34709 * 119.99546 * 359.71804 * 14 13 12 17 17 C 1.45207 * 116.99670 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.46779 * 180.02562 * 17 16 14 19 19 C 1.53934 * 113.73242 * 175.00366 * 18 17 16 20 20 N 1.47957 * 86.30387 * 138.02097 * 19 18 17 21 21 C 1.38995 * 111.00493 * 222.46916 * 20 19 18 22 22 C 1.39137 * 119.71044 * 179.97438 * 21 20 19 23 23 C 1.38296 * 119.10095 * 180.02562 * 22 21 20 24 24 C 1.38885 * 118.50454 * 0.02562 * 23 22 21 25 25 C 1.38025 * 119.32697 * 359.97438 * 24 23 22 26 26 N 1.31971 * 120.85993 * 359.72434 * 25 24 23 27 27 C 1.48186 * 90.67459 * 335.41028 * 20 19 18 28 28 C 1.39089 * 119.93881 * 359.48511 * 13 12 11 29 29 H 0.97001 * 120.00230 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.97640 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.79026 * 180.02562 * 11 10 9 32 32 H 1.08001 * 119.82735 * 180.27312 * 12 11 10 33 33 H 1.09002 * 109.46264 * 60.00712 * 17 16 14 34 34 H 1.08995 * 109.47396 * 300.00689 * 17 16 14 35 35 H 1.09001 * 112.93885 * 43.43444 * 18 17 16 36 36 H 1.09004 * 113.76239 * 252.39812 * 19 18 17 37 37 H 1.09007 * 113.75913 * 23.65005 * 19 18 17 38 38 H 1.08004 * 120.44662 * 0.02562 * 22 21 20 39 39 H 1.07995 * 120.75150 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.33397 * 180.02562 * 24 23 22 41 41 H 1.08008 * 119.56858 * 179.97438 * 25 24 23 42 42 H 1.08997 * 113.65492 * 270.26677 * 27 20 19 43 43 H 1.09007 * 113.92413 * 138.94820 * 27 20 19 44 44 H 1.07995 * 120.21270 * 180.23343 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8836 2.3965 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2867 9 6 1.3521 -2.4070 -0.3774 10 6 1.8264 -3.6500 0.0832 11 6 1.1861 -4.8121 -0.2857 12 6 0.0720 -4.7684 -1.1049 13 6 -0.4109 -3.5429 -1.5770 14 6 -1.5982 -3.5048 -2.4558 15 8 -2.0199 -2.4402 -2.8612 16 8 -2.2129 -4.6507 -2.8074 17 6 -3.3737 -4.5375 -3.6725 18 6 -3.9329 -5.9322 -3.9604 19 6 -5.2408 -5.9198 -4.7721 20 7 -4.6679 -7.0528 -5.5318 21 6 -4.9078 -6.9117 -6.8936 22 6 -4.4450 -7.8799 -7.7792 23 6 -4.6903 -7.7266 -9.1316 24 6 -5.3925 -6.6056 -9.5550 25 6 -5.8223 -5.6846 -8.6212 26 7 -5.5789 -5.8597 -7.3359 27 6 -3.2956 -6.6147 -5.1842 28 6 0.2243 -2.3600 -1.2136 29 1 -0.4850 0.8400 0.0004 30 1 2.6935 -3.6922 0.7257 31 1 1.5533 -5.7633 0.0704 32 1 -0.4253 -5.6853 -1.3847 33 1 -3.0835 -4.0615 -4.6091 34 1 -4.1367 -3.9350 -3.1798 35 1 -3.9727 -6.5653 -3.0741 36 1 -6.1227 -6.1836 -4.1882 37 1 -5.3796 -5.0173 -5.3676 38 1 -3.9016 -8.7394 -7.4155 39 1 -4.3437 -8.4619 -9.8425 40 1 -5.6008 -6.4566 -10.6041 41 1 -6.3683 -4.8112 -8.9461 42 1 -2.8646 -5.9165 -5.9016 43 1 -2.6217 -7.4327 -4.9294 44 1 -0.1469 -1.4115 -1.5724 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842889926.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:53 Heat of formation + Delta-G solvation = -0.727505 kcal Electronic energy + Delta-G solvation = -27219.529598 eV Core-core repulsion = 23295.323096 eV Total energy + Delta-G solvation = -3924.206502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.26750 -41.39070 -39.88288 -39.13267 -37.39069 -35.62238 -33.60294 -33.23369 -32.21015 -31.36492 -30.18539 -27.43723 -27.33725 -26.63092 -24.67327 -24.27662 -22.87629 -22.72546 -21.59872 -20.72543 -19.60834 -18.66337 -18.18053 -17.74672 -17.64488 -17.34145 -16.91408 -16.70480 -16.54307 -16.32410 -15.66279 -15.38492 -15.21972 -14.98247 -14.50201 -14.38549 -14.23684 -14.18714 -13.97620 -13.53405 -13.45693 -13.03769 -12.99630 -12.81864 -12.59701 -12.53391 -12.32656 -12.21573 -12.10700 -12.01105 -11.54191 -11.50267 -11.27611 -11.10122 -11.04200 -10.84500 -10.43219 -9.61763 -9.45250 -9.44215 -8.69314 -6.39981 0.08581 0.12862 0.31205 0.96349 1.37338 1.44796 1.53584 1.62014 1.79557 2.18593 2.47836 2.71727 2.82830 3.14845 3.42108 3.60159 3.63271 3.85509 3.98257 4.03287 4.07506 4.16787 4.21432 4.25556 4.33042 4.41238 4.45001 4.47470 4.62613 4.64392 4.78501 4.79952 4.81291 4.85838 5.04398 5.08384 5.13892 5.17342 5.26848 5.27989 5.30690 5.45028 5.57476 5.82272 5.89715 6.01351 6.08534 6.23130 6.53116 6.80220 6.86340 6.89047 6.93589 8.28365 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.019260 B = 0.002052 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.465543 B =13641.705969 C =14352.787366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.088 0.912 9 C 0.064 3.936 10 C -0.202 4.202 11 C -0.099 4.099 12 C -0.178 4.178 13 C -0.129 4.129 14 C 0.515 3.485 15 O -0.549 6.549 16 O -0.343 6.343 17 C 0.073 3.927 18 C -0.104 4.104 19 C 0.030 3.970 20 N -0.439 5.439 21 C 0.246 3.754 22 C -0.175 4.175 23 C -0.062 4.062 24 C -0.185 4.185 25 C 0.100 3.900 26 N -0.542 5.542 27 C 0.028 3.972 28 C -0.125 4.125 29 H 0.287 0.713 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.174 0.826 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 -14.301 -15.657 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.173 1.173 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.522 4.522 8 H 0.106 0.894 9 C 0.062 3.938 10 C -0.222 4.222 11 C -0.117 4.117 12 C -0.198 4.198 13 C -0.130 4.130 14 C 0.363 3.637 15 O -0.441 6.441 16 O -0.260 6.260 17 C -0.001 4.001 18 C -0.123 4.123 19 C -0.098 4.098 20 N -0.158 5.158 21 C 0.017 3.983 22 C -0.196 4.196 23 C -0.088 4.088 24 C -0.205 4.205 25 C -0.057 4.057 26 N -0.255 5.255 27 C -0.098 4.098 28 C -0.145 4.145 29 H 0.098 0.902 30 H 0.134 0.866 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.165 0.835 39 H 0.185 0.815 40 H 0.183 0.817 41 H 0.191 0.809 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.178 -13.935 -15.031 22.884 hybrid contribution 0.349 1.362 -0.786 1.611 sum -9.828 -12.573 -15.817 22.469 Atomic orbital electron populations 1.69877 1.09278 1.30686 1.35399 1.26871 0.95416 1.05036 0.91275 0.85136 0.79728 0.76020 0.78739 1.17323 1.19593 1.18921 1.19884 0.98715 0.91958 1.41658 0.89421 1.17916 0.91668 0.94146 0.90063 1.21514 1.03573 0.92511 1.04615 1.20979 0.95210 0.98076 0.97439 1.20978 0.99708 0.95388 1.03691 1.19085 0.95455 0.96177 1.02270 1.21717 0.82830 0.81355 0.77802 1.90743 1.66015 1.32580 1.54761 1.86556 1.42776 1.33887 1.62757 1.23185 0.85326 0.98753 0.92864 1.23030 0.95764 0.94050 0.99477 1.23868 0.97215 0.94317 0.94447 1.66225 1.08004 1.38789 1.02798 1.20696 0.94783 0.90695 0.92168 1.21858 1.03493 1.00289 0.93979 1.21946 0.94075 0.97487 0.95247 1.22448 1.00099 0.95428 1.02553 1.23050 0.96083 0.99423 0.87173 1.67552 1.17036 1.21551 1.19405 1.24106 0.90439 0.99853 0.95386 1.21466 0.98302 0.95875 0.98861 0.90194 0.86650 0.84001 0.84679 0.92006 0.90997 0.85557 0.87589 0.88923 0.83469 0.81521 0.81702 0.80861 0.91473 0.86511 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.39 10.96 21.82 0.24 -45.15 16 2 C 0.03 1.48 5.14 85.25 0.44 1.92 16 3 Si 0.98 38.91 29.60 68.60 2.03 40.94 16 4 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.49 -26.29 9.05 23.47 0.21 -26.08 16 8 H 0.09 4.39 7.91 -2.91 -0.02 4.37 16 9 C 0.06 3.44 5.57 -21.32 -0.12 3.33 16 10 C -0.20 -9.29 9.78 22.77 0.22 -9.07 16 11 C -0.10 -3.95 10.01 22.17 0.22 -3.73 16 12 C -0.18 -7.39 9.62 22.71 0.22 -7.17 16 13 C -0.13 -6.23 5.87 -20.14 -0.12 -6.35 16 14 C 0.51 23.46 7.90 70.34 0.56 24.01 16 15 O -0.55 -28.02 16.12 19.96 0.32 -27.70 16 16 O -0.34 -12.43 9.46 -56.18 -0.53 -12.96 16 17 C 0.07 2.14 5.33 71.98 0.38 2.52 16 18 C -0.10 -2.30 4.21 -10.15 -0.04 -2.34 16 19 C 0.03 0.63 7.21 86.41 0.62 1.26 16 20 N -0.44 -9.45 6.25 -709.94 -4.44 -13.89 16 21 C 0.25 5.36 5.89 133.07 0.78 6.14 16 22 C -0.17 -2.96 9.95 22.50 0.22 -2.73 16 23 C -0.06 -0.75 10.17 22.44 0.23 -0.52 16 24 C -0.19 -2.22 10.10 22.37 0.23 -1.99 16 25 C 0.10 1.64 11.17 84.62 0.95 2.59 16 26 N -0.54 -12.14 8.21 -193.26 -1.59 -13.72 16 27 C 0.03 0.59 7.44 86.36 0.64 1.23 16 28 C -0.13 -6.90 8.24 23.02 0.19 -6.71 16 29 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 30 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 31 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.14 4.73 7.59 -2.91 -0.02 4.70 16 33 H 0.06 1.88 7.83 -2.39 -0.02 1.86 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.09 2.20 6.63 -2.38 -0.02 2.18 16 38 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 40 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 41 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.07 1.52 7.66 -2.39 -0.02 1.50 16 43 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.10 6.32 5.74 -2.91 -0.02 6.30 16 Total: -1.00 -68.65 377.11 2.89 -65.76 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 1.02 Total: 30.43 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 5.84 Total: -23.71 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -5.79 Total: -72.77 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.21 Total: -40.66 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -68.65 2.89 -65.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842889926.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.030 kcal (2) G-P(sol) polarization free energy of solvation -68.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds