Wall clock time and date at job start Tue Mar 31 2020 20:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00250 * 2 1 4 4 H 1.48498 * 109.47372 * 270.00478 * 3 2 1 5 5 H 1.48506 * 109.46999 * 30.00638 * 3 2 1 6 6 H 1.48508 * 109.47080 * 150.00309 * 3 2 1 7 7 C 1.37883 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00031 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00010 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99997 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00135 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00094 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.47464 * 180.02562 * 13 11 10 15 15 C 1.34227 * 117.00414 * 180.02562 * 14 13 11 16 16 O 1.20830 * 119.99533 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00239 * 180.02562 * 15 14 13 18 18 N 1.46498 * 109.47124 * 179.97438 * 17 15 14 19 19 N 1.40311 * 126.32212 * 270.02177 * 18 17 15 20 20 C 1.28879 * 108.11780 * 180.35790 * 19 18 17 21 21 N 1.38115 * 108.89174 * 0.79814 * 20 19 18 22 22 C 1.34311 * 108.29826 * 358.29147 * 21 20 19 23 23 O 1.21812 * 126.32274 * 181.84202 * 22 21 20 24 24 C 1.46718 * 124.21456 * 177.64895 * 21 20 19 25 25 C 1.53292 * 108.66063 * 19.14150 * 24 21 20 26 26 C 1.53240 * 109.34732 * 308.24821 * 25 24 21 27 27 C 1.51117 * 127.46218 * 180.92581 * 20 19 18 28 28 H 0.97004 * 119.99553 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47526 * 59.99326 * 9 7 2 30 30 H 1.08999 * 109.46829 * 299.99524 * 9 7 2 31 31 H 0.97005 * 119.99857 * 359.97438 * 10 9 7 32 32 H 1.08997 * 109.47010 * 59.99928 * 13 11 10 33 33 H 1.09007 * 109.47120 * 300.00584 * 13 11 10 34 34 H 1.09001 * 109.47506 * 59.99479 * 17 15 14 35 35 H 1.09001 * 109.47205 * 299.99588 * 17 15 14 36 36 H 1.08994 * 109.60708 * 259.38586 * 24 21 20 37 37 H 1.09000 * 109.60610 * 138.88621 * 24 21 20 38 38 H 1.08997 * 109.49061 * 188.28707 * 25 24 21 39 39 H 1.08995 * 109.48951 * 68.20476 * 25 24 21 40 40 H 1.08998 * 109.54723 * 310.91385 * 26 25 24 41 41 H 1.09000 * 109.62362 * 190.67860 * 26 25 24 42 42 H 1.09002 * 109.75296 * 78.15387 * 27 20 19 43 43 H 1.09003 * 109.74935 * 317.46876 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3248 -2.8217 -0.0020 12 8 6.1129 -1.8999 -0.0025 13 6 5.8272 -4.2425 -0.0013 14 8 7.2791 -4.2426 -0.0020 15 6 7.8885 -5.4386 -0.0020 16 8 7.2303 -6.4519 -0.0010 17 6 9.3934 -5.5175 -0.0021 18 7 9.8087 -6.9224 -0.0015 19 7 10.0440 -7.7190 1.1293 20 6 10.3985 -8.8910 0.7272 21 7 10.4260 -8.9007 -0.6536 22 6 10.0361 -7.6924 -1.0916 23 8 9.9114 -7.3522 -2.2546 24 6 10.8343 -10.0546 -1.4626 25 6 10.7469 -11.3164 -0.5965 26 6 11.5142 -11.0893 0.7104 27 6 10.7365 -10.0920 1.5799 28 1 -0.4850 0.8401 -0.0004 29 1 3.8753 -0.6805 0.8887 30 1 3.8744 -0.6802 -0.8912 31 1 3.3694 -3.3126 -0.0002 32 1 5.4630 -4.7571 -0.8905 33 1 5.4645 -4.7557 0.8895 34 1 9.7833 -5.0234 0.8878 35 1 9.7831 -5.0235 -0.8921 36 1 11.8598 -9.9165 -1.8052 37 1 10.1695 -10.1533 -2.3207 38 1 11.1848 -12.1574 -1.1339 39 1 9.7022 -11.5317 -0.3721 40 1 12.5022 -10.6862 0.4879 41 1 11.6175 -12.0346 1.2432 42 1 9.8193 -10.5564 1.9422 43 1 11.3514 -9.7825 2.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845230816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:41 Heat of formation + Delta-G solvation = -73.554047 kcal Electronic energy + Delta-G solvation = -28284.277109 eV Core-core repulsion = 23946.063348 eV Total energy + Delta-G solvation = -4338.213761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.94871 -40.65909 -38.91538 -38.12449 -37.26396 -36.45574 -34.38298 -34.02866 -33.02934 -32.43573 -30.04792 -29.32870 -28.44421 -27.00344 -24.99474 -23.19741 -22.65083 -22.04283 -21.05217 -20.29001 -20.13670 -18.27001 -17.93179 -17.41310 -17.16623 -16.89103 -16.50311 -16.22543 -16.06261 -15.63539 -15.18453 -14.96426 -14.91158 -14.86043 -14.72228 -14.08520 -13.96929 -13.49802 -13.40578 -13.18080 -12.72137 -12.62271 -12.44815 -12.37747 -12.29839 -12.05623 -11.80152 -11.67239 -11.63545 -11.08102 -11.00653 -10.86315 -10.75986 -10.56064 -10.32932 -10.00163 -9.54665 -9.36548 -8.91636 -8.81991 -8.27662 -6.24219 -4.27340 1.16063 1.52838 1.95607 2.14353 2.45995 2.65396 3.01664 3.25724 3.32450 3.40306 3.68573 3.81336 3.91791 4.02259 4.09753 4.31029 4.35248 4.56569 4.62867 4.69629 4.79672 4.81988 4.96235 5.03676 5.05210 5.10256 5.10755 5.15508 5.16787 5.21297 5.27394 5.47157 5.48587 5.66994 6.10903 6.17721 6.72709 7.00691 7.08456 7.23850 7.31349 7.48397 7.68956 8.04100 8.40730 8.67222 8.79143 9.34763 10.87534 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033868 B = 0.001757 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.542660 B =15933.291222 C =16057.197249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.503 3.497 12 O -0.536 6.536 13 C 0.051 3.949 14 O -0.326 6.326 15 C 0.444 3.556 16 O -0.497 6.497 17 C 0.176 3.824 18 N -0.446 5.446 19 N -0.269 5.269 20 C 0.283 3.717 21 N -0.555 5.555 22 C 0.658 3.342 23 O -0.547 6.547 24 C 0.131 3.869 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.041 4.041 28 H 0.268 0.732 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.399 0.601 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.478 -26.146 2.606 37.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.349 5.349 11 C 0.286 3.714 12 O -0.413 6.413 13 C -0.027 4.027 14 O -0.240 6.240 15 C 0.284 3.716 16 O -0.384 6.384 17 C 0.052 3.948 18 N -0.267 5.267 19 N -0.090 5.090 20 C 0.004 3.996 21 N -0.285 5.285 22 C 0.358 3.642 23 O -0.420 6.420 24 C 0.009 3.991 25 C -0.176 4.176 26 C -0.163 4.163 27 C -0.081 4.081 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.233 0.767 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 26.324 -24.688 2.521 36.177 hybrid contribution -0.273 0.087 -0.694 0.751 sum 26.050 -24.602 1.827 35.877 Atomic orbital electron populations 1.69877 1.06220 1.27508 1.49141 1.24790 0.94808 0.99196 0.93773 0.86811 0.80571 0.83165 0.79117 1.19781 1.20826 1.18454 1.21071 0.88338 0.95355 1.53692 0.90128 1.19561 0.95368 0.77920 0.97105 1.46064 1.04829 1.11571 1.72485 1.19886 0.83733 0.89329 0.78443 1.90699 1.55307 1.45626 1.49698 1.22853 0.77431 0.97455 1.04942 1.86518 1.22167 1.31883 1.83439 1.24062 0.92366 0.81941 0.73186 1.90699 1.66614 1.36481 1.44560 1.20701 0.87982 0.77383 1.08695 1.48417 1.64171 1.10794 1.03317 1.76799 1.21829 1.00596 1.09774 1.24349 0.96937 0.95484 0.82833 1.46063 1.61813 1.13587 1.07051 1.16530 0.80924 0.81298 0.85429 1.91110 1.59853 1.76039 1.14981 1.21829 1.01549 0.82000 0.93707 1.22000 1.02540 0.96633 0.96419 1.21729 0.99143 0.99781 0.95617 1.20537 1.02699 0.88528 0.96296 0.92183 0.95380 0.95834 0.76696 0.88246 0.88206 0.83975 0.84076 0.89845 0.88885 0.88730 0.90272 0.90639 0.89251 0.87731 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.55 -14.94 9.83 -34.44 -0.34 -15.28 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.43 4.50 -5.20 -0.02 5.41 16 10 N -0.70 -14.10 5.55 -61.48 -0.34 -14.44 16 11 C 0.50 9.75 7.91 -10.98 -0.09 9.66 16 12 O -0.54 -12.43 16.50 -14.10 -0.23 -12.66 16 13 C 0.05 0.77 5.94 36.01 0.21 0.98 16 14 O -0.33 -5.04 9.75 -45.90 -0.45 -5.49 16 15 C 0.44 6.30 8.03 36.00 0.29 6.59 16 16 O -0.50 -8.33 16.18 -18.75 -0.30 -8.64 16 17 C 0.18 1.89 6.98 -5.20 -0.04 1.85 16 18 N -0.45 -5.52 3.13 -66.32 -0.21 -5.73 16 19 N -0.27 -2.95 12.51 33.15 0.41 -2.54 16 20 C 0.28 2.33 7.73 -153.65 -1.19 1.14 16 21 N -0.56 -5.24 3.14 -117.44 -0.37 -5.61 16 22 C 0.66 8.81 8.65 -86.78 -0.75 8.06 16 23 O -0.55 -9.00 17.84 5.09 0.09 -8.91 16 24 C 0.13 0.72 6.87 -3.77 -0.03 0.69 16 25 C -0.14 -0.32 5.94 -26.46 -0.16 -0.47 16 26 C -0.12 -0.18 5.96 -26.36 -0.16 -0.34 16 27 C -0.04 -0.13 6.32 -27.44 -0.17 -0.31 16 28 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 30 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 31 H 0.40 6.98 8.32 -40.82 -0.34 6.64 16 32 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16 33 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 34 H 0.14 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.14 1.29 8.12 -51.93 -0.42 0.86 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.08 0.23 8.10 -51.93 -0.42 -0.19 16 40 H 0.07 0.11 8.11 -51.93 -0.42 -0.31 16 41 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 42 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -39.73 373.75 -7.94 -47.68 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.75 Total: -0.50 kcal Atomic # 6 Polarization: 22.64 SS G_CDS: -2.53 Total: 20.11 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.27 Total: -53.91 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.89 Total: -35.69 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.73 -7.94 -47.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845230816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.879 kcal (2) G-P(sol) polarization free energy of solvation -39.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds