Wall clock time and date at job start Tue Mar 31 2020 20:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00250 * 2 1 4 4 H 1.48498 * 109.47372 * 270.00478 * 3 2 1 5 5 H 1.48506 * 109.46999 * 30.00638 * 3 2 1 6 6 H 1.48508 * 109.47080 * 150.00309 * 3 2 1 7 7 C 1.37883 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00031 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00010 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47172 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99997 * 179.97438 * 10 9 7 12 12 O 1.21275 * 120.00135 * 0.02562 * 11 10 9 13 13 C 1.50706 * 120.00094 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.47464 * 180.02562 * 13 11 10 15 15 C 1.34227 * 117.00414 * 180.02562 * 14 13 11 16 16 O 1.20830 * 119.99533 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00239 * 180.02562 * 15 14 13 18 18 N 1.46498 * 109.47124 * 179.97438 * 17 15 14 19 19 N 1.40311 * 126.32212 * 270.02177 * 18 17 15 20 20 C 1.28879 * 108.11780 * 180.35790 * 19 18 17 21 21 N 1.38115 * 108.89174 * 0.79814 * 20 19 18 22 22 C 1.34311 * 108.29826 * 358.29147 * 21 20 19 23 23 O 1.21812 * 126.32274 * 181.84202 * 22 21 20 24 24 C 1.46718 * 124.21456 * 177.64895 * 21 20 19 25 25 C 1.53292 * 108.66063 * 19.14150 * 24 21 20 26 26 C 1.53240 * 109.34732 * 308.24821 * 25 24 21 27 27 C 1.51117 * 127.46218 * 180.92581 * 20 19 18 28 28 H 0.97004 * 119.99553 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47526 * 59.99326 * 9 7 2 30 30 H 1.08999 * 109.46829 * 299.99524 * 9 7 2 31 31 H 0.97005 * 119.99857 * 359.97438 * 10 9 7 32 32 H 1.08997 * 109.47010 * 59.99928 * 13 11 10 33 33 H 1.09007 * 109.47120 * 300.00584 * 13 11 10 34 34 H 1.09001 * 109.47506 * 59.99479 * 17 15 14 35 35 H 1.09001 * 109.47205 * 299.99588 * 17 15 14 36 36 H 1.08994 * 109.60708 * 259.38586 * 24 21 20 37 37 H 1.09000 * 109.60610 * 138.88621 * 24 21 20 38 38 H 1.08997 * 109.49061 * 188.28707 * 25 24 21 39 39 H 1.08995 * 109.48951 * 68.20476 * 25 24 21 40 40 H 1.08998 * 109.54723 * 310.91385 * 26 25 24 41 41 H 1.09000 * 109.62362 * 190.67860 * 26 25 24 42 42 H 1.09002 * 109.75296 * 78.15387 * 27 20 19 43 43 H 1.09003 * 109.74935 * 317.46876 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 5.3248 -2.8217 -0.0020 12 8 6.1129 -1.8999 -0.0025 13 6 5.8272 -4.2425 -0.0013 14 8 7.2791 -4.2426 -0.0020 15 6 7.8885 -5.4386 -0.0020 16 8 7.2303 -6.4519 -0.0010 17 6 9.3934 -5.5175 -0.0021 18 7 9.8087 -6.9224 -0.0015 19 7 10.0440 -7.7190 1.1293 20 6 10.3985 -8.8910 0.7272 21 7 10.4260 -8.9007 -0.6536 22 6 10.0361 -7.6924 -1.0916 23 8 9.9114 -7.3522 -2.2546 24 6 10.8343 -10.0546 -1.4626 25 6 10.7469 -11.3164 -0.5965 26 6 11.5142 -11.0893 0.7104 27 6 10.7365 -10.0920 1.5799 28 1 -0.4850 0.8401 -0.0004 29 1 3.8753 -0.6805 0.8887 30 1 3.8744 -0.6802 -0.8912 31 1 3.3694 -3.3126 -0.0002 32 1 5.4630 -4.7571 -0.8905 33 1 5.4645 -4.7557 0.8895 34 1 9.7833 -5.0234 0.8878 35 1 9.7831 -5.0235 -0.8921 36 1 11.8598 -9.9165 -1.8052 37 1 10.1695 -10.1533 -2.3207 38 1 11.1848 -12.1574 -1.1339 39 1 9.7022 -11.5317 -0.3721 40 1 12.5022 -10.6862 0.4879 41 1 11.6175 -12.0346 1.2432 42 1 9.8193 -10.5564 1.9422 43 1 11.3514 -9.7825 2.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845230816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:40 Heat of formation + Delta-G solvation = -101.744152 kcal Electronic energy + Delta-G solvation = -28285.499524 eV Core-core repulsion = 23946.063348 eV Total energy + Delta-G solvation = -4339.436176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.71856 -41.85510 -40.49352 -38.92255 -38.08457 -37.55714 -36.23894 -34.63069 -34.48665 -33.69287 -31.36388 -30.17774 -29.46266 -28.45410 -25.53655 -24.21814 -23.69391 -23.27168 -22.08931 -21.78126 -20.71931 -19.53780 -19.23106 -18.58640 -18.20479 -18.05973 -17.80121 -17.16333 -17.09873 -16.88944 -16.65169 -16.33481 -15.92067 -15.56501 -15.22721 -15.15506 -14.88220 -14.85415 -14.38995 -14.32083 -14.02845 -13.97108 -13.88910 -13.46371 -13.20463 -13.10692 -12.97981 -12.72277 -12.10493 -12.05725 -12.04667 -11.94179 -11.89362 -11.84824 -11.69197 -11.40918 -11.12791 -10.99096 -10.93964 -10.08022 -9.78346 -8.41553 -6.49517 0.33656 0.82350 0.86050 1.17103 1.33030 1.35551 1.45208 1.48069 1.49629 1.93431 2.27104 2.40443 2.93765 3.13119 3.42270 3.54192 3.62125 3.72191 3.84095 3.86566 3.96434 3.96620 4.04779 4.32799 4.35900 4.39810 4.53058 4.68257 4.72442 4.84161 4.89431 4.96188 4.98318 5.03426 5.05112 5.17931 5.21355 5.35394 5.35941 5.53643 6.03139 6.35711 6.46278 6.49867 6.67109 6.77248 7.08025 7.23172 8.73013 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033868 B = 0.001757 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.542660 B =15933.291222 C =16057.197249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.232 3.768 10 N -0.697 5.697 11 C 0.507 3.493 12 O -0.574 6.574 13 C 0.058 3.942 14 O -0.336 6.336 15 C 0.449 3.551 16 O -0.526 6.526 17 C 0.173 3.827 18 N -0.453 5.453 19 N -0.299 5.299 20 C 0.293 3.707 21 N -0.553 5.553 22 C 0.640 3.360 23 O -0.592 6.592 24 C 0.118 3.882 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.042 4.042 28 H 0.273 0.727 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.412 0.588 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.175 0.825 35 H 0.155 0.845 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.623 -27.919 3.640 40.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.348 5.348 11 C 0.293 3.707 12 O -0.454 6.454 13 C -0.018 4.018 14 O -0.251 6.251 15 C 0.291 3.709 16 O -0.415 6.415 17 C 0.051 3.949 18 N -0.273 5.273 19 N -0.121 5.121 20 C 0.015 3.985 21 N -0.281 5.281 22 C 0.339 3.661 23 O -0.468 6.468 24 C -0.002 4.002 25 C -0.169 4.169 26 C -0.156 4.156 27 C -0.081 4.081 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.249 0.751 32 H 0.135 0.865 33 H 0.142 0.858 34 H 0.192 0.808 35 H 0.172 0.828 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 28.482 -26.527 3.582 39.086 hybrid contribution -0.930 0.496 -1.007 1.458 sum 27.552 -26.031 2.575 37.991 Atomic orbital electron populations 1.69980 1.07736 1.28696 1.50439 1.25607 0.95560 1.02744 0.93474 0.85846 0.79327 0.79176 0.79487 1.19020 1.19783 1.18190 1.21276 0.89819 0.94732 1.53014 0.92142 1.19192 0.93461 0.80180 0.96276 1.45864 1.05798 1.10458 1.72695 1.20452 0.82788 0.90747 0.76745 1.90679 1.56111 1.47354 1.51283 1.22745 0.77850 0.94281 1.06967 1.86519 1.22089 1.32835 1.83627 1.24708 0.93446 0.80951 0.71830 1.90680 1.67439 1.37209 1.46130 1.21016 0.85564 0.77531 1.10837 1.48606 1.63758 1.11313 1.03588 1.76820 1.24219 1.01756 1.09327 1.25413 0.94407 0.95997 0.82688 1.46348 1.60611 1.13152 1.07995 1.16902 0.81355 0.82602 0.85205 1.91052 1.61945 1.77189 1.16630 1.22226 1.01808 0.82264 0.93918 1.22037 1.02757 0.95369 0.96692 1.21765 0.98567 1.00444 0.94826 1.20919 1.03924 0.86889 0.96363 0.91782 0.96251 0.96531 0.75138 0.86450 0.85835 0.80818 0.82755 0.88549 0.90180 0.86121 0.90808 0.90309 0.86396 0.86440 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.96 21.45 0.30 -55.23 16 2 C 0.03 1.51 5.47 84.66 0.46 1.97 16 3 Si 0.94 43.87 27.47 68.60 1.88 45.75 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.26 -11.87 6.54 99.48 0.65 -11.22 16 7 C -0.55 -30.31 9.83 25.60 0.25 -30.06 16 8 H 0.06 3.49 7.84 -2.91 -0.02 3.47 16 9 C 0.23 11.31 4.50 85.64 0.38 11.69 16 10 N -0.70 -27.73 5.55 -466.81 -2.59 -30.32 16 11 C 0.51 19.27 7.91 87.66 0.69 19.97 16 12 O -0.57 -26.44 16.50 15.78 0.26 -26.18 16 13 C 0.06 1.71 5.94 71.24 0.42 2.13 16 14 O -0.34 -10.10 9.75 -45.04 -0.44 -10.53 16 15 C 0.45 12.46 8.03 71.23 0.57 13.03 16 16 O -0.53 -17.47 16.18 21.95 0.36 -17.11 16 17 C 0.17 3.63 6.98 85.63 0.60 4.23 16 18 N -0.45 -11.11 3.13 -481.57 -1.51 -12.61 16 19 N -0.30 -6.31 12.51 -49.04 -0.61 -6.92 16 20 C 0.29 4.41 7.73 137.71 1.06 5.48 16 21 N -0.55 -10.14 3.14 -643.89 -2.02 -12.16 16 22 C 0.64 17.41 8.65 179.01 1.55 18.95 16 23 O -0.59 -20.23 17.84 -4.71 -0.08 -20.32 16 24 C 0.12 1.18 6.87 86.44 0.59 1.77 16 25 C -0.13 -0.24 5.94 30.77 0.18 -0.06 16 26 C -0.12 0.10 5.96 30.83 0.18 0.28 16 27 C -0.04 -0.15 6.32 30.14 0.19 0.04 16 28 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 30 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 31 H 0.41 14.17 8.32 -92.70 -0.77 13.40 16 32 H 0.12 3.05 8.13 -2.39 -0.02 3.03 16 33 H 0.12 3.06 8.13 -2.38 -0.02 3.04 16 34 H 0.17 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.16 2.78 8.12 -2.39 -0.02 2.76 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.12 -0.35 8.14 -2.39 -0.02 -0.36 16 39 H 0.07 0.26 8.10 -2.39 -0.02 0.24 16 40 H 0.08 -0.06 8.11 -2.39 -0.02 -0.07 16 41 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 Total: -1.00 -87.91 373.75 2.93 -84.99 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.23 Total: 11.23 kcal Atomic # 6 Polarization: 42.28 SS G_CDS: 7.15 Total: 49.43 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -6.43 Total: -117.25 kcal Atomic # 8 Polarization: -74.24 SS G_CDS: 0.09 Total: -74.15 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -87.91 2.93 -84.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845230816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.759 kcal (2) G-P(sol) polarization free energy of solvation -87.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds