Wall clock time and date at job start Tue Mar 31 2020 20:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86803 * 119.99403 * 2 1 4 4 H 1.48509 * 109.46810 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47268 * 299.99474 * 3 2 1 6 6 H 1.48497 * 109.47306 * 60.00225 * 3 2 1 7 7 C 1.38651 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99698 * 179.97438 * 7 2 1 9 9 O 1.34824 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99876 * 185.08678 * 9 7 2 11 11 C 1.38885 * 120.06556 * 354.61213 * 10 9 7 12 12 C 1.38105 * 119.92767 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06811 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.92968 * 179.97438 * 13 12 11 15 15 N 1.46502 * 109.46716 * 90.00345 * 14 13 12 16 16 C 1.34782 * 120.00179 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99780 * 5.01354 * 16 15 14 18 18 C 1.50696 * 120.00148 * 185.00861 * 16 15 14 19 19 C 1.50699 * 115.56292 * 269.53321 * 18 16 15 20 20 C 1.38223 * 119.61712 * 310.63657 * 19 18 16 21 21 C 1.38633 * 119.16101 * 179.97438 * 20 19 18 22 22 C 1.38672 * 118.42103 * 359.97438 * 21 20 19 23 23 C 1.38187 * 119.16105 * 0.02562 * 22 21 20 24 24 N 1.31857 * 119.61786 * 130.36713 * 19 18 16 25 25 C 1.53005 * 117.49645 * 55.22104 * 18 16 15 26 26 C 1.53000 * 117.49735 * 123.84266 * 18 16 15 27 27 C 1.38298 * 120.14144 * 0.25862 * 13 12 11 28 28 C 1.38104 * 120.06536 * 359.44442 * 27 13 12 29 29 H 0.97003 * 120.00441 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.03705 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.96429 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.47384 * 330.00958 * 14 13 12 33 33 H 1.08997 * 109.47238 * 210.00236 * 14 13 12 34 34 H 0.97004 * 120.00503 * 0.02562 * 15 14 13 35 35 H 1.08000 * 120.42306 * 359.95476 * 20 19 18 36 36 H 1.08001 * 120.78597 * 180.02562 * 21 20 19 37 37 H 1.07996 * 120.41787 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.61437 * 179.97438 * 23 22 21 39 39 H 1.08999 * 117.49862 * 0.02562 * 25 18 16 40 40 H 1.08999 * 117.49946 * 214.97578 * 25 18 16 41 41 H 1.09001 * 117.49588 * 145.02020 * 26 18 16 42 42 H 1.08994 * 117.49922 * 0.02562 * 26 18 16 43 43 H 1.08001 * 119.96795 * 179.70270 * 27 13 12 44 44 H 1.08005 * 120.03684 * 180.27431 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3683 0.0005 10 6 2.0700 -3.5045 0.1083 11 6 3.4573 -3.4389 0.0996 12 6 4.2025 -4.5965 0.2089 13 6 3.5686 -5.8202 0.3264 14 6 4.3848 -7.0814 0.4449 15 7 4.6517 -7.3593 1.8584 16 6 5.3694 -8.4453 2.2079 17 8 5.8710 -9.1420 1.3513 18 6 5.5485 -8.7937 3.6630 19 6 6.7591 -8.1942 4.3309 20 6 7.9973 -8.3037 3.7264 21 6 9.1045 -7.7483 4.3489 22 6 8.9239 -7.1000 5.5614 23 6 7.6555 -7.0302 6.1053 24 7 6.6240 -7.5666 5.4827 25 6 4.2854 -8.9623 4.5098 26 6 5.1107 -10.1885 4.1145 27 6 2.1874 -5.8893 0.3295 28 6 1.4366 -4.7347 0.2267 29 1 -0.4851 0.8400 0.0004 30 1 3.9528 -2.4839 0.0066 31 1 5.2813 -4.5463 0.2017 32 1 5.3289 -6.9544 -0.0849 33 1 3.8326 -7.9139 0.0089 34 1 4.3113 -6.7621 2.5428 35 1 8.1010 -8.8158 2.7812 36 1 10.0842 -7.8181 3.8997 37 1 9.7640 -6.6553 6.0741 38 1 7.5066 -6.5274 7.0495 39 1 3.3248 -8.8215 4.0142 40 1 4.3300 -8.6396 5.5500 41 1 5.6983 -10.6724 4.8947 42 1 4.6935 -10.8541 3.3590 43 1 1.6953 -6.8467 0.4167 44 1 0.3579 -4.7888 0.2337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865137360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:20 Heat of formation + Delta-G solvation = 24.186702 kcal Electronic energy + Delta-G solvation = -27374.816526 eV Core-core repulsion = 23451.690385 eV Total energy + Delta-G solvation = -3923.126141 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.95784 -39.64879 -39.05726 -37.07489 -36.53156 -34.43477 -32.68249 -32.38056 -31.33655 -30.31356 -29.98274 -26.35930 -25.41408 -24.49730 -23.84688 -22.50479 -22.41283 -22.07219 -20.65325 -19.91014 -18.10713 -17.98674 -17.08096 -16.66484 -16.39593 -15.97183 -15.77921 -15.19308 -14.98849 -14.67045 -14.48543 -14.23039 -14.04366 -13.83430 -13.71211 -13.53915 -13.37274 -12.98282 -12.81448 -12.73151 -12.15172 -12.12626 -11.76390 -11.69956 -11.45106 -11.12613 -11.00291 -10.89272 -10.79549 -10.69941 -10.48889 -10.15056 -9.93807 -9.69965 -9.44067 -9.18518 -9.01282 -8.92481 -8.30343 -7.34540 -6.54450 -4.13265 0.76629 0.99028 2.03497 2.11380 2.47555 3.04068 3.08530 3.12322 3.14279 3.31240 3.70952 3.89175 3.92965 4.32766 4.43539 4.55478 4.60231 4.68383 4.76326 4.82214 4.96523 5.00287 5.11051 5.16649 5.23793 5.38025 5.38780 5.42201 5.56009 5.63663 5.66153 5.77603 5.81901 5.87485 5.90728 5.92504 6.10486 6.32727 6.38846 6.45494 6.58039 6.78385 6.94014 7.12163 7.25241 7.33576 7.53968 7.68714 7.69947 7.90372 8.16486 8.91034 9.59002 10.63127 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002398 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.560972 B =11674.352579 C =12821.233715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.236 4.236 12 C -0.050 4.050 13 C -0.216 4.216 14 C 0.179 3.821 15 N -0.712 5.712 16 C 0.553 3.447 17 O -0.539 6.539 18 C -0.120 4.120 19 C 0.170 3.830 20 C -0.156 4.156 21 C -0.074 4.074 22 C -0.175 4.175 23 C 0.101 3.899 24 N -0.475 5.475 25 C -0.142 4.142 26 C -0.132 4.132 27 C -0.054 4.054 28 C -0.195 4.195 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.405 0.595 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.171 -15.598 10.455 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.256 4.256 12 C -0.069 4.069 13 C -0.217 4.217 14 C 0.057 3.943 15 N -0.363 5.363 16 C 0.338 3.662 17 O -0.416 6.416 18 C -0.124 4.124 19 C 0.033 3.967 20 C -0.176 4.176 21 C -0.100 4.100 22 C -0.195 4.195 23 C -0.056 4.056 24 N -0.183 5.183 25 C -0.179 4.179 26 C -0.170 4.170 27 C -0.072 4.072 28 C -0.214 4.214 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.175 0.825 39 H 0.122 0.878 40 H 0.134 0.866 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.244 -15.791 10.153 22.975 hybrid contribution 1.315 1.255 -0.096 1.821 sum 14.559 -14.535 10.057 22.900 Atomic orbital electron populations 1.70044 1.06009 1.27785 1.45488 1.25320 0.95860 0.98938 0.96337 0.85632 0.79161 0.80212 0.78356 1.19038 1.20048 1.20029 1.21405 0.91898 0.80713 1.52901 0.88876 1.83980 1.34521 1.11572 1.77472 1.19441 0.90297 0.88068 0.91565 1.21158 0.93789 0.98929 1.11704 1.20636 0.98342 0.91666 0.96247 1.19181 0.93577 0.93532 1.15403 1.20027 0.98577 0.95022 0.80711 1.46342 1.54208 1.26053 1.09662 1.19202 0.78187 0.80776 0.88077 1.90687 1.48382 1.51337 1.51198 1.19892 0.96160 1.03407 0.92933 1.19713 0.91814 0.94279 0.90926 1.22011 0.92903 1.00862 1.01793 1.21612 0.99177 0.94667 0.94498 1.22182 0.99189 1.01076 0.97055 1.22748 0.88036 0.95703 0.99088 1.67326 1.34299 1.08189 1.08525 1.23118 0.93273 1.00187 1.01336 1.23023 1.02016 0.89190 1.02733 1.20522 0.92698 0.96848 0.97166 1.20216 0.99686 0.90222 1.11297 0.91907 0.85420 0.87498 0.91487 0.91405 0.76013 0.84282 0.84633 0.84665 0.82453 0.87756 0.86569 0.87944 0.87540 0.86931 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -10.70 9.49 30.88 0.29 -10.40 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.79 9.76 0.04 0.00 -4.79 16 10 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 11 C -0.24 -4.93 9.17 -39.39 -0.36 -5.29 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.22 -3.46 5.25 -104.58 -0.55 -4.01 16 14 C 0.18 2.49 5.80 -5.19 -0.03 2.46 16 15 N -0.71 -9.26 5.54 -61.47 -0.34 -9.60 16 16 C 0.55 7.42 6.47 -10.98 -0.07 7.35 16 17 O -0.54 -8.71 16.90 5.56 0.09 -8.62 16 18 C -0.12 -1.35 2.20 -156.81 -0.35 -1.69 16 19 C 0.17 1.96 6.16 -82.59 -0.51 1.45 16 20 C -0.16 -1.67 9.42 -39.44 -0.37 -2.05 16 21 C -0.07 -0.63 10.18 -39.28 -0.40 -1.03 16 22 C -0.18 -1.36 10.11 -39.44 -0.40 -1.76 16 23 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 24 N -0.47 -5.32 9.41 -9.47 -0.09 -5.41 16 25 C -0.14 -1.34 9.72 -26.73 -0.26 -1.60 16 26 C -0.13 -1.23 9.94 -26.73 -0.27 -1.50 16 27 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 28 C -0.19 -3.91 9.99 -39.39 -0.39 -4.30 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.40 5.06 8.47 -40.82 -0.35 4.71 16 35 H 0.14 1.54 7.74 -52.49 -0.41 1.14 16 36 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.12 1.08 7.63 -51.93 -0.40 0.69 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -31.87 384.70 -9.28 -41.15 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.50 Total: 10.05 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -4.98 Total: -19.71 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.33 Total: -38.90 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.87 -9.28 -41.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865137360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.336 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds