Wall clock time and date at job start Tue Mar 31 2020 20:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86803 * 119.99403 * 2 1 4 4 H 1.48509 * 109.46810 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47268 * 299.99474 * 3 2 1 6 6 H 1.48497 * 109.47306 * 60.00225 * 3 2 1 7 7 C 1.38651 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99698 * 179.97438 * 7 2 1 9 9 O 1.34824 * 119.99849 * 0.02562 * 7 2 1 10 10 C 1.35758 * 116.99876 * 185.08678 * 9 7 2 11 11 C 1.38885 * 120.06556 * 354.61213 * 10 9 7 12 12 C 1.38105 * 119.92767 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06811 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.92968 * 179.97438 * 13 12 11 15 15 N 1.46502 * 109.46716 * 90.00345 * 14 13 12 16 16 C 1.34782 * 120.00179 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99780 * 5.01354 * 16 15 14 18 18 C 1.50696 * 120.00148 * 185.00861 * 16 15 14 19 19 C 1.50699 * 115.56292 * 269.53321 * 18 16 15 20 20 C 1.38223 * 119.61712 * 310.63657 * 19 18 16 21 21 C 1.38633 * 119.16101 * 179.97438 * 20 19 18 22 22 C 1.38672 * 118.42103 * 359.97438 * 21 20 19 23 23 C 1.38187 * 119.16105 * 0.02562 * 22 21 20 24 24 N 1.31857 * 119.61786 * 130.36713 * 19 18 16 25 25 C 1.53005 * 117.49645 * 55.22104 * 18 16 15 26 26 C 1.53000 * 117.49735 * 123.84266 * 18 16 15 27 27 C 1.38298 * 120.14144 * 0.25862 * 13 12 11 28 28 C 1.38104 * 120.06536 * 359.44442 * 27 13 12 29 29 H 0.97003 * 120.00441 * 359.97438 * 1 2 3 30 30 H 1.07995 * 120.03705 * 359.97438 * 11 10 9 31 31 H 1.07999 * 119.96429 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.47384 * 330.00958 * 14 13 12 33 33 H 1.08997 * 109.47238 * 210.00236 * 14 13 12 34 34 H 0.97004 * 120.00503 * 0.02562 * 15 14 13 35 35 H 1.08000 * 120.42306 * 359.95476 * 20 19 18 36 36 H 1.08001 * 120.78597 * 180.02562 * 21 20 19 37 37 H 1.07996 * 120.41787 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.61437 * 179.97438 * 23 22 21 39 39 H 1.08999 * 117.49862 * 0.02562 * 25 18 16 40 40 H 1.08999 * 117.49946 * 214.97578 * 25 18 16 41 41 H 1.09001 * 117.49588 * 145.02020 * 26 18 16 42 42 H 1.08994 * 117.49922 * 0.02562 * 26 18 16 43 43 H 1.08001 * 119.96795 * 179.70270 * 27 13 12 44 44 H 1.08005 * 120.03684 * 180.27431 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8907 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3683 0.0005 10 6 2.0700 -3.5045 0.1083 11 6 3.4573 -3.4389 0.0996 12 6 4.2025 -4.5965 0.2089 13 6 3.5686 -5.8202 0.3264 14 6 4.3848 -7.0814 0.4449 15 7 4.6517 -7.3593 1.8584 16 6 5.3694 -8.4453 2.2079 17 8 5.8710 -9.1420 1.3513 18 6 5.5485 -8.7937 3.6630 19 6 6.7591 -8.1942 4.3309 20 6 7.9973 -8.3037 3.7264 21 6 9.1045 -7.7483 4.3489 22 6 8.9239 -7.1000 5.5614 23 6 7.6555 -7.0302 6.1053 24 7 6.6240 -7.5666 5.4827 25 6 4.2854 -8.9623 4.5098 26 6 5.1107 -10.1885 4.1145 27 6 2.1874 -5.8893 0.3295 28 6 1.4366 -4.7347 0.2267 29 1 -0.4851 0.8400 0.0004 30 1 3.9528 -2.4839 0.0066 31 1 5.2813 -4.5463 0.2017 32 1 5.3289 -6.9544 -0.0849 33 1 3.8326 -7.9139 0.0089 34 1 4.3113 -6.7621 2.5428 35 1 8.1010 -8.8158 2.7812 36 1 10.0842 -7.8181 3.8997 37 1 9.7640 -6.6553 6.0741 38 1 7.5066 -6.5274 7.0495 39 1 3.3248 -8.8215 4.0142 40 1 4.3300 -8.6396 5.5500 41 1 5.6983 -10.6724 4.8947 42 1 4.6935 -10.8541 3.3590 43 1 1.6953 -6.8467 0.4167 44 1 0.3579 -4.7888 0.2337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865137360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:19 Heat of formation + Delta-G solvation = 4.959940 kcal Electronic energy + Delta-G solvation = -27375.650261 eV Core-core repulsion = 23451.690385 eV Total energy + Delta-G solvation = -3923.959876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.78505 -40.91376 -40.38686 -38.58451 -37.50322 -35.70245 -34.28721 -33.37062 -32.02073 -31.87047 -31.44165 -27.86522 -26.90386 -25.56008 -24.53798 -23.67420 -23.40461 -23.19770 -22.13304 -20.89638 -19.88788 -19.01233 -18.70690 -17.47663 -17.18166 -17.06422 -16.66143 -16.49615 -16.33750 -15.95500 -15.81189 -15.55760 -15.46364 -15.02141 -14.92966 -14.65386 -14.41023 -14.21045 -14.12959 -13.80023 -13.67519 -13.30004 -13.07332 -12.84007 -12.61859 -12.46272 -12.38073 -12.28085 -12.10924 -11.77987 -11.76653 -11.22322 -10.99419 -10.84740 -10.80354 -10.42297 -10.14473 -9.89436 -9.83408 -9.03222 -8.49847 -6.18091 0.06894 0.31020 0.51452 0.55420 1.34908 1.42108 1.44830 1.52745 2.08418 2.15940 2.54152 2.80904 2.95515 3.13245 3.20414 3.46581 3.61306 3.64800 3.83922 3.91690 3.98649 4.00001 4.05918 4.14601 4.21732 4.26910 4.41743 4.47695 4.53946 4.67447 4.69163 4.74537 4.78198 4.86364 4.95117 5.01626 5.12575 5.17552 5.19532 5.23705 5.25381 5.34625 5.50046 5.66968 5.72027 5.73961 5.99993 6.13338 6.46666 6.95088 6.97948 7.10749 7.73876 8.73177 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013053 B = 0.002398 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.560972 B =11674.352579 C =12821.233715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.228 6.228 10 C 0.124 3.876 11 C -0.244 4.244 12 C -0.048 4.048 13 C -0.183 4.183 14 C 0.184 3.816 15 N -0.708 5.708 16 C 0.558 3.442 17 O -0.568 6.568 18 C -0.132 4.132 19 C 0.153 3.847 20 C -0.175 4.175 21 C -0.076 4.076 22 C -0.168 4.168 23 C 0.090 3.910 24 N -0.495 5.495 25 C -0.131 4.131 26 C -0.124 4.124 27 C -0.042 4.042 28 C -0.203 4.203 29 H 0.273 0.727 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.409 0.591 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.151 0.849 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.837 -16.981 11.709 26.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.134 6.134 10 C 0.072 3.928 11 C -0.263 4.263 12 C -0.066 4.066 13 C -0.185 4.185 14 C 0.061 3.939 15 N -0.358 5.358 16 C 0.344 3.656 17 O -0.447 6.447 18 C -0.136 4.136 19 C 0.016 3.984 20 C -0.195 4.195 21 C -0.101 4.101 22 C -0.188 4.188 23 C -0.067 4.067 24 N -0.204 5.204 25 C -0.168 4.168 26 C -0.162 4.162 27 C -0.060 4.060 28 C -0.223 4.223 29 H 0.083 0.917 30 H 0.137 0.863 31 H 0.152 0.848 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.245 0.755 35 H 0.146 0.854 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.199 0.801 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.168 0.832 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.938 -17.229 11.419 26.101 hybrid contribution 0.671 1.311 -0.420 1.532 sum 16.608 -15.918 11.000 25.499 Atomic orbital electron populations 1.70180 1.08010 1.28843 1.48578 1.26571 0.96823 1.02713 0.95756 0.84546 0.78268 0.74916 0.78600 1.17487 1.19369 1.19288 1.21859 0.92537 0.81361 1.53211 0.88016 1.83949 1.36021 1.12651 1.80764 1.19993 0.91532 0.88032 0.93193 1.21225 0.93107 0.99939 1.12036 1.20917 0.99631 0.90937 0.95130 1.19477 0.93601 0.94009 1.11376 1.19962 0.98443 0.93938 0.81541 1.46197 1.54233 1.26203 1.09204 1.19482 0.77238 0.80085 0.88820 1.90672 1.49477 1.52248 1.52311 1.19825 0.97268 1.04873 0.91662 1.19751 0.91997 0.95194 0.91504 1.22055 0.93688 1.01908 1.01838 1.21955 0.99594 0.93859 0.94728 1.22543 0.99749 0.99945 0.96532 1.23287 0.88223 0.95315 0.99859 1.67318 1.35492 1.08881 1.08704 1.23142 0.92842 0.99759 1.01090 1.23096 1.01645 0.88749 1.02734 1.20893 0.92890 0.97137 0.95073 1.20469 1.00175 0.90319 1.11297 0.91748 0.86304 0.84772 0.91183 0.90169 0.75522 0.85426 0.82283 0.81497 0.80095 0.87078 0.86484 0.87091 0.87345 0.83173 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.50 13.67 21.61 0.30 -55.20 16 2 C -0.02 -1.16 5.49 84.83 0.47 -0.69 16 3 Si 1.02 42.09 29.55 68.60 2.03 44.12 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.41 -23.59 9.49 67.92 0.64 -22.95 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.37 9.76 -22.77 -0.22 -13.59 16 10 C 0.12 5.91 6.65 22.58 0.15 6.06 16 11 C -0.24 -10.20 9.17 22.39 0.21 -9.99 16 12 C -0.05 -1.57 9.69 22.25 0.22 -1.35 16 13 C -0.18 -5.35 5.25 -19.84 -0.10 -5.45 16 14 C 0.18 4.51 5.80 85.63 0.50 5.01 16 15 N -0.71 -16.54 5.54 -466.79 -2.59 -19.12 16 16 C 0.56 13.93 6.47 87.65 0.57 14.50 16 17 O -0.57 -17.50 16.90 -3.03 -0.05 -17.55 16 18 C -0.13 -2.77 2.20 -53.67 -0.12 -2.89 16 19 C 0.15 3.31 6.16 42.55 0.26 3.57 16 20 C -0.17 -3.55 9.42 22.36 0.21 -3.33 16 21 C -0.08 -1.12 10.18 22.47 0.23 -0.89 16 22 C -0.17 -2.10 10.11 22.36 0.23 -1.87 16 23 C 0.09 1.39 11.18 84.67 0.95 2.34 16 24 N -0.49 -10.24 9.41 -183.89 -1.73 -11.97 16 25 C -0.13 -2.23 9.72 30.60 0.30 -1.93 16 26 C -0.12 -2.12 9.94 30.60 0.30 -1.82 16 27 C -0.04 -1.28 9.69 22.25 0.22 -1.06 16 28 C -0.20 -8.15 9.99 22.39 0.22 -7.93 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 31 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 33 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 34 H 0.41 9.13 8.47 -92.71 -0.79 8.35 16 35 H 0.13 2.79 7.74 -2.91 -0.02 2.77 16 36 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.18 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 40 H 0.12 1.99 7.63 -2.39 -0.02 1.97 16 41 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 44 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -73.75 384.70 3.43 -70.33 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.26 Total: 33.67 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 5.44 Total: -30.68 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -4.02 Total: -86.30 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.27 Total: -31.14 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -73.75 3.43 -70.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865137360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.289 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds