Wall clock time and date at job start Tue Mar 31 2020 20:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86798 * 119.99838 * 2 1 4 4 H 1.48496 * 109.47464 * 274.73333 * 3 2 1 5 5 H 1.48504 * 109.47215 * 34.73533 * 3 2 1 6 6 H 1.48503 * 109.46901 * 154.73036 * 3 2 1 7 7 C 1.39948 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99810 * 160.68691 * 7 2 1 9 9 C 1.41393 * 120.00043 * 340.67455 * 7 2 1 10 10 C 1.40716 * 120.23995 * 154.14117 * 9 7 2 11 11 C 1.37623 * 119.74040 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.25116 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.75007 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.47092 * 90.00437 * 13 12 11 15 15 C 1.34771 * 120.00028 * 179.97438 * 14 13 12 16 16 O 1.21653 * 120.00109 * 5.53294 * 15 14 13 17 17 C 1.47072 * 119.99989 * 185.26017 * 15 14 13 18 18 C 1.39342 * 120.58825 * 174.94521 * 17 15 14 19 19 C 1.39468 * 118.96002 * 179.97438 * 18 17 15 20 20 C 1.35757 * 120.13215 * 359.97438 * 19 18 17 21 21 N 1.35437 * 121.22922 * 359.97438 * 20 19 18 22 22 C 1.46506 * 119.46952 * 180.02562 * 21 20 19 23 23 C 1.53003 * 117.49785 * 8.62528 * 22 21 20 24 24 C 1.53000 * 117.49863 * 300.00416 * 22 21 20 25 25 C 1.34654 * 121.05808 * 359.75855 * 21 20 19 26 26 O 1.21882 * 120.10141 * 180.26401 * 25 21 20 27 27 C 1.38640 * 120.50121 * 0.26196 * 12 11 10 28 28 C 1.37615 * 120.24340 * 359.44085 * 27 12 11 29 29 H 0.96998 * 120.00581 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.13234 * 0.02562 * 10 9 7 31 31 H 1.08007 * 119.87305 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.47390 * 330.00487 * 13 12 11 33 33 H 1.09003 * 109.47079 * 210.00376 * 13 12 11 34 34 H 0.96996 * 119.99451 * 359.97438 * 14 13 12 35 35 H 1.07999 * 120.52030 * 0.02562 * 18 17 15 36 36 H 1.08007 * 119.93547 * 180.02562 * 19 18 17 37 37 H 1.08004 * 119.38828 * 180.02562 * 20 19 18 38 38 H 1.08998 * 115.54981 * 154.33648 * 22 21 20 39 39 H 1.08993 * 117.50062 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.49420 * 145.02341 * 23 22 21 41 41 H 1.09002 * 117.49776 * 214.98031 * 24 22 21 42 42 H 1.09001 * 117.49794 * 359.97438 * 24 22 21 43 43 H 1.07996 * 119.87246 * 179.70189 * 27 12 11 44 44 H 1.08003 * 120.12404 * 180.27776 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3896 2.1043 -1.3952 5 1 1.4932 2.6217 0.7978 6 1 3.5862 1.4134 0.5977 7 6 2.0080 -1.2120 -0.0005 8 1 3.0424 -1.2381 -0.3099 9 6 1.3608 -2.4022 0.4042 10 6 1.8051 -3.6485 -0.0747 11 6 1.1673 -4.8005 0.3255 12 6 0.0906 -4.7361 1.1965 13 6 -0.5999 -6.0046 1.6269 14 7 0.0387 -6.5207 2.8402 15 6 -0.4150 -7.6544 3.4104 16 8 -1.2871 -8.3032 2.8642 17 6 0.1484 -8.1104 4.6901 18 6 -0.3820 -9.2215 5.3427 19 6 0.1789 -9.6247 6.5542 20 6 1.2255 -8.9398 7.0821 21 7 1.7468 -7.8596 6.4529 22 6 2.8769 -7.1494 7.0570 23 6 3.5430 -7.7894 8.2767 24 6 2.6696 -6.5448 8.4471 25 6 1.2466 -7.4313 5.2784 26 8 1.7323 -6.4600 4.7249 27 6 -0.3594 -3.5132 1.6698 28 6 0.2670 -2.3490 1.2878 29 1 -0.4851 0.8400 0.0004 30 1 2.6434 -3.7009 -0.7535 31 1 1.5068 -5.7583 -0.0403 32 1 -0.5241 -6.7471 0.8325 33 1 -1.6503 -5.7956 1.8298 34 1 0.7880 -6.0463 3.2331 35 1 -1.2139 -9.7625 4.9165 36 1 -0.2196 -10.4840 7.0732 37 1 1.6509 -9.2627 8.0208 38 1 3.5161 -6.6053 6.3617 39 1 3.1401 -8.7386 8.6300 40 1 4.6207 -7.6665 8.3839 41 1 3.1728 -5.6030 8.6664 42 1 1.6924 -6.6750 8.9120 43 1 -1.2021 -3.4746 2.3442 44 1 -0.0824 -1.3978 1.6613 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869062388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:50 Heat of formation + Delta-G solvation = -5.045791 kcal Electronic energy + Delta-G solvation = -27797.872041 eV Core-core repulsion = 23873.478285 eV Total energy + Delta-G solvation = -3924.393757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.72834 -40.56318 -39.45263 -38.65658 -37.60576 -36.25116 -34.99369 -33.90092 -32.16808 -31.29119 -31.11622 -28.70767 -26.50904 -25.43926 -24.65941 -23.36110 -22.98082 -22.85998 -21.84927 -21.46683 -19.27750 -19.05877 -18.84783 -18.24444 -17.21835 -17.15764 -16.92943 -16.66420 -16.24032 -15.95973 -15.67215 -15.57906 -15.41378 -15.24849 -14.93655 -14.28675 -14.14781 -13.90068 -13.65348 -13.53986 -13.51351 -13.34069 -13.15150 -12.98658 -12.76566 -12.43589 -12.40818 -12.19764 -12.12392 -11.70481 -11.55442 -11.37600 -11.24542 -11.11449 -10.97451 -10.75747 -9.98964 -9.44918 -9.33068 -9.10866 -8.70542 -6.39425 -0.61611 0.73931 0.81180 1.07315 1.31169 1.36149 1.44970 1.52828 1.68839 2.18416 2.43675 2.53644 2.78592 2.84765 3.39540 3.50692 3.64659 3.69236 3.83454 3.85640 3.92926 3.99265 4.15860 4.22293 4.24205 4.45300 4.58195 4.65004 4.67254 4.72530 4.85940 4.95106 4.96458 4.99472 5.10030 5.11419 5.20574 5.27468 5.37354 5.46187 5.58326 5.63712 5.84983 5.85422 6.03144 6.14201 6.30400 6.60396 6.62008 6.87345 6.87995 6.96177 7.32208 8.28267 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.002639 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.690099 B =10608.362868 C =12136.914217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.499 4.499 8 H 0.078 0.922 9 C 0.088 3.912 10 C -0.242 4.242 11 C -0.071 4.071 12 C -0.228 4.228 13 C 0.189 3.811 14 N -0.712 5.712 15 C 0.562 3.438 16 O -0.595 6.595 17 C -0.323 4.323 18 C 0.077 3.923 19 C -0.231 4.231 20 C 0.170 3.830 21 N -0.455 5.455 22 C -0.001 4.001 23 C -0.138 4.138 24 C -0.173 4.173 25 C 0.519 3.481 26 O -0.581 6.581 27 C -0.085 4.085 28 C -0.188 4.188 29 H 0.290 0.710 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.412 0.588 35 H 0.155 0.845 36 H 0.204 0.796 37 H 0.223 0.777 38 H 0.123 0.877 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -18.208 23.302 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.528 4.528 8 H 0.097 0.903 9 C 0.086 3.914 10 C -0.262 4.262 11 C -0.090 4.090 12 C -0.230 4.230 13 C 0.066 3.934 14 N -0.372 5.372 15 C 0.352 3.648 16 O -0.480 6.480 17 C -0.330 4.330 18 C 0.053 3.947 19 C -0.253 4.253 20 C 0.040 3.960 21 N -0.160 5.160 22 C -0.103 4.103 23 C -0.175 4.175 24 C -0.211 4.211 25 C 0.323 3.677 26 O -0.466 6.466 27 C -0.103 4.103 28 C -0.208 4.208 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.258 0.742 35 H 0.172 0.828 36 H 0.221 0.779 37 H 0.239 0.761 38 H 0.141 0.859 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.322 -17.784 22.571 29.059 hybrid contribution 0.319 1.386 -0.692 1.582 sum 4.642 -16.398 21.879 27.733 Atomic orbital electron populations 1.69885 1.09192 1.30873 1.34663 1.26836 0.95480 1.04722 0.90978 0.85168 0.79183 0.75665 0.79540 1.18446 1.18878 1.18202 1.19861 0.99055 0.92639 1.41209 0.90345 1.17992 0.91353 0.93152 0.88926 1.21166 1.05140 0.92982 1.06893 1.20668 0.94822 0.97047 0.96460 1.19233 1.02768 0.93247 1.07751 1.19781 0.95032 0.92259 0.86355 1.47009 1.36537 1.25731 1.27887 1.18073 0.81628 0.80502 0.84637 1.90693 1.34655 1.57095 1.65549 1.20825 1.05343 1.06006 1.00873 1.22348 0.93322 0.87728 0.91309 1.21215 1.00226 1.06239 0.97599 1.23203 0.91756 0.83108 0.97927 1.44871 1.27826 1.24824 1.18463 1.22404 0.91709 1.04408 0.91815 1.23738 1.01474 0.98323 0.93965 1.23604 1.03138 0.99707 0.94642 1.17103 0.84584 0.84921 0.81125 1.90659 1.63431 1.30036 1.62518 1.20725 0.98445 0.92551 0.98621 1.21167 1.00940 0.96684 1.01994 0.89910 0.88041 0.87115 0.92239 0.92551 0.74186 0.82784 0.77870 0.76077 0.85925 0.84391 0.85423 0.86981 0.86911 0.88086 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.51 11.14 21.83 0.24 -44.26 16 2 C 0.04 1.86 5.09 85.26 0.43 2.29 16 3 Si 0.98 39.22 29.60 68.60 2.03 41.25 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.50 -28.10 9.04 23.46 0.21 -27.89 16 8 H 0.08 4.24 7.92 -2.91 -0.02 4.22 16 9 C 0.09 5.08 5.55 -21.29 -0.12 4.96 16 10 C -0.24 -12.88 9.80 22.73 0.22 -12.66 16 11 C -0.07 -3.50 9.67 22.22 0.21 -3.29 16 12 C -0.23 -11.10 5.27 -19.67 -0.10 -11.20 16 13 C 0.19 8.26 5.80 85.63 0.50 8.75 16 14 N -0.71 -30.33 5.46 -470.43 -2.57 -32.90 16 15 C 0.56 22.18 7.74 86.56 0.67 22.85 16 16 O -0.60 -25.55 16.41 -4.20 -0.07 -25.62 16 17 C -0.32 -9.74 5.92 -19.79 -0.12 -9.86 16 18 C 0.08 1.47 9.70 22.83 0.22 1.69 16 19 C -0.23 -1.86 9.99 21.99 0.22 -1.64 16 20 C 0.17 1.24 9.83 83.56 0.82 2.06 16 21 N -0.46 -8.04 2.92 -627.14 -1.83 -9.87 16 22 C 0.00 -0.01 6.18 44.99 0.28 0.26 16 23 C -0.14 -0.47 9.79 30.60 0.30 -0.17 16 24 C -0.17 -1.45 10.25 30.59 0.31 -1.14 16 25 C 0.52 15.42 7.44 85.16 0.63 16.05 16 26 O -0.58 -22.55 13.39 -4.93 -0.07 -22.61 16 27 C -0.08 -4.36 9.67 22.22 0.21 -4.14 16 28 C -0.19 -10.65 8.69 22.73 0.20 -10.45 16 29 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 30 H 0.10 5.06 8.06 -2.91 -0.02 5.04 16 31 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.06 2.55 8.08 -2.39 -0.02 2.53 16 33 H 0.06 2.44 8.08 -2.39 -0.02 2.42 16 34 H 0.41 18.45 5.06 -92.78 -0.47 17.98 16 35 H 0.15 2.77 7.70 -2.91 -0.02 2.75 16 36 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 37 H 0.22 -0.90 5.73 -2.91 -0.02 -0.92 16 38 H 0.12 2.53 7.62 -2.39 -0.02 2.51 16 39 H 0.14 -0.46 6.02 -2.39 -0.01 -0.48 16 40 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 44 H 0.10 5.80 6.32 -2.91 -0.02 5.78 16 Total: -1.00 -82.45 373.15 3.43 -79.02 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: 0.58 Total: 38.50 kcal Atomic # 6 Polarization: -28.63 SS G_CDS: 5.11 Total: -23.52 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -4.16 Total: -87.03 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -0.13 Total: -48.23 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -82.45 3.43 -79.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869062388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.979 kcal (2) G-P(sol) polarization free energy of solvation -82.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds