Wall clock time and date at job start Tue Mar 31 2020 20:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86796 * 119.99909 * 2 1 4 4 H 1.48500 * 109.47176 * 240.00393 * 3 2 1 5 5 H 1.48504 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47220 * 120.00544 * 3 2 1 7 7 C 1.38792 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99994 * 180.02562 * 7 2 1 9 9 O 1.34860 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.34789 * 116.99861 * 180.02562 * 9 7 2 11 11 O 1.21551 * 119.99848 * 359.97438 * 10 9 7 12 12 C 1.47329 * 119.99964 * 180.02562 * 10 9 7 13 13 C 1.39879 * 120.06897 * 0.24396 * 12 10 9 14 14 C 1.37614 * 119.95748 * 180.25728 * 13 12 10 15 15 C 1.39171 * 120.10421 * 359.49501 * 14 13 12 16 16 N 1.39165 * 119.92701 * 180.23780 * 15 14 13 17 17 C 1.46491 * 120.00086 * 359.97438 * 16 15 14 18 18 C 1.53005 * 109.47233 * 180.02562 * 17 16 15 19 19 N 1.46901 * 109.47444 * 180.02562 * 18 17 16 20 20 C 1.47016 * 110.99655 * 293.63656 * 19 18 17 21 21 C 1.53099 * 109.25805 * 177.60528 * 20 19 18 22 22 O 1.43019 * 109.25685 * 56.84780 * 21 20 19 23 23 C 1.43019 * 113.73889 * 301.32970 * 22 21 20 24 24 C 1.47010 * 111.00191 * 170.00265 * 19 18 17 25 25 C 1.39409 * 120.14565 * 0.25299 * 15 14 13 26 26 F 1.35095 * 119.98413 * 180.02562 * 25 15 14 27 27 C 1.37764 * 120.03575 * 0.02562 * 25 15 14 28 28 H 0.96995 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.02234 * 0.03355 * 13 12 10 30 30 H 1.08002 * 119.95015 * 179.77645 * 14 13 12 31 31 H 0.96999 * 119.99712 * 180.02562 * 16 15 14 32 32 H 1.08996 * 109.47495 * 300.00779 * 17 16 15 33 33 H 1.08996 * 109.47064 * 60.00917 * 17 16 15 34 34 H 1.09005 * 109.47068 * 300.00301 * 18 17 16 35 35 H 1.09000 * 109.47088 * 60.00139 * 18 17 16 36 36 H 1.09000 * 109.50460 * 297.54068 * 20 19 18 37 37 H 1.09001 * 109.50731 * 57.67421 * 20 19 18 38 38 H 1.09005 * 109.50768 * 296.91610 * 21 20 19 39 39 H 1.08997 * 109.54205 * 176.80189 * 21 20 19 40 40 H 1.09002 * 109.50706 * 298.73913 * 23 22 21 41 41 H 1.08995 * 109.54310 * 178.62380 * 23 22 21 42 42 H 1.09007 * 109.50391 * 302.32572 * 24 19 18 43 43 H 1.08996 * 109.50784 * 62.41045 * 24 19 18 44 44 H 1.07997 * 120.05069 * 179.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1021 1.6964 1.2124 7 6 2.0083 -1.2020 -0.0005 8 1 3.0883 -1.2020 -0.0001 9 8 1.3340 -2.3699 -0.0005 10 6 2.0681 -3.5003 -0.0005 11 8 3.2819 -3.4367 -0.0010 12 6 1.3992 -4.8130 -0.0011 13 6 0.0024 -4.8879 -0.0068 14 6 -0.6199 -6.1153 -0.0020 15 6 0.1382 -7.2824 -0.0020 16 7 -0.4951 -8.5216 -0.0021 17 6 -1.9581 -8.5966 -0.0016 18 6 -2.3936 -10.0633 -0.0012 19 7 -3.8607 -10.1386 -0.0013 20 6 -4.4151 -9.6156 1.2559 21 6 -5.9441 -9.6571 1.1894 22 8 -6.3686 -10.9973 0.9265 23 6 -5.8477 -11.5379 -0.2908 24 6 -4.3177 -11.5155 -0.2392 25 6 1.5305 -7.2128 -0.0017 26 9 2.2632 -8.3478 -0.0023 27 6 2.1597 -5.9873 -0.0007 28 1 -0.4850 0.8400 0.0004 29 1 -0.5872 -3.9831 -0.0113 30 1 -1.6984 -6.1729 -0.0027 31 1 0.0323 -9.3357 -0.0018 32 1 -2.3470 -8.1022 0.8885 33 1 -2.3475 -8.1019 -0.8914 34 1 -2.0047 -10.5581 -0.8913 35 1 -2.0042 -10.5578 0.8887 36 1 -4.0702 -10.2286 2.0886 37 1 -4.0849 -8.5867 1.3992 38 1 -6.2916 -9.0019 0.3905 39 1 -6.3595 -9.3237 2.1403 40 1 -6.1923 -10.9374 -1.1326 41 1 -6.1927 -12.5649 -0.4107 42 1 -3.9162 -11.8735 -1.1873 43 1 -3.9706 -12.1589 0.5691 44 1 3.2383 -5.9331 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869635261.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:38 Heat of formation + Delta-G solvation = -129.049829 kcal Electronic energy + Delta-G solvation = -28109.402249 eV Core-core repulsion = 23748.862049 eV Total energy + Delta-G solvation = -4360.540200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.64750 -40.11022 -39.47745 -38.45406 -36.90400 -35.43816 -34.82454 -32.18099 -31.73029 -30.94696 -30.36821 -28.65125 -26.50986 -25.28887 -24.54502 -23.36283 -22.77771 -21.65570 -20.85159 -20.15184 -17.92911 -17.81046 -17.33275 -17.00335 -16.62221 -16.19817 -15.98537 -15.55729 -15.52830 -15.45692 -15.30671 -14.77419 -14.62321 -14.51774 -14.41253 -14.33647 -13.85169 -13.75663 -13.16749 -12.90915 -12.59100 -12.51525 -12.37299 -11.99928 -11.88621 -11.83088 -11.60043 -11.46715 -11.20482 -11.03153 -10.97888 -10.49628 -10.47001 -10.15783 -9.97021 -9.83646 -9.07334 -8.97236 -8.66543 -8.59157 -7.42076 -6.44802 -4.07373 1.25321 1.47928 2.81596 3.14536 3.18657 3.22611 3.39965 3.42630 3.56951 3.90907 4.25163 4.30698 4.32475 4.41605 4.44759 4.58990 4.62809 4.67731 4.78828 4.83465 4.95870 5.01829 5.06416 5.15856 5.17005 5.28043 5.33202 5.37795 5.43013 5.45058 5.54340 5.60660 5.75339 5.86615 6.18069 6.34914 6.36168 6.36726 6.67089 6.70461 6.78863 6.99397 7.20192 7.38461 7.48054 7.93442 8.71584 9.04303 9.84521 10.73046 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.002076 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.839286 B =13481.385025 C =15110.769103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.374 4.374 8 H 0.097 0.903 9 O -0.206 6.206 10 C 0.439 3.561 11 O -0.557 6.557 12 C -0.118 4.118 13 C -0.028 4.028 14 C -0.185 4.185 15 C 0.202 3.798 16 N -0.743 5.743 17 C 0.128 3.872 18 C 0.046 3.954 19 N -0.533 5.533 20 C 0.011 3.989 21 C 0.063 3.937 22 O -0.387 6.387 23 C 0.064 3.936 24 C 0.018 3.982 25 C 0.004 3.996 26 F -0.147 7.147 27 C -0.055 4.055 28 H 0.271 0.729 29 H 0.148 0.852 30 H 0.133 0.867 31 H 0.401 0.599 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.197 -22.583 0.276 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.163 4.163 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.450 4.450 8 H 0.114 0.886 9 O -0.113 6.113 10 C 0.288 3.712 11 O -0.455 6.455 12 C -0.122 4.122 13 C -0.048 4.048 14 C -0.208 4.208 15 C 0.097 3.903 16 N -0.374 5.374 17 C 0.003 3.997 18 C -0.083 4.083 19 N -0.258 5.258 20 C -0.117 4.117 21 C -0.014 4.014 22 O -0.305 6.305 23 C -0.014 4.014 24 C -0.110 4.110 25 C -0.019 4.019 26 F -0.126 7.126 27 C -0.075 4.075 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.151 0.849 31 H 0.236 0.764 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.106 0.894 43 H 0.062 0.938 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.584 -22.222 0.014 25.538 hybrid contribution 1.344 -0.120 0.477 1.431 sum -11.241 -22.342 0.491 25.015 Atomic orbital electron populations 1.69967 1.06011 1.27941 1.45872 1.25357 0.95856 0.98891 0.96235 0.85713 0.78636 0.79255 0.79420 1.19419 1.20358 1.19435 1.21242 0.92522 0.79784 1.51477 0.88565 1.83894 1.39051 1.13175 1.75154 1.20543 0.85788 0.85322 0.79582 1.90633 1.15173 1.87915 1.51822 1.18949 0.93192 0.91165 1.08863 1.21463 0.93657 0.98056 0.91576 1.20481 0.99614 0.90107 1.10572 1.17822 0.89607 0.86886 0.95961 1.44229 1.05538 1.05037 1.82563 1.21271 0.79955 0.96077 1.02378 1.22217 0.87518 0.96652 1.01881 1.62084 1.08194 1.21009 1.34522 1.22930 0.96487 1.01777 0.90501 1.22695 0.92567 0.83956 1.02183 1.87998 1.71788 1.29327 1.41400 1.22666 0.91588 0.99686 0.87416 1.22802 0.97129 0.88971 1.02082 1.16796 0.86937 0.82380 1.15789 1.91411 1.77082 1.48851 1.95227 1.20936 1.01310 0.89201 0.96037 0.91922 0.83396 0.84910 0.76426 0.91864 0.90783 0.89821 0.93911 0.93671 0.88893 0.91915 0.88189 0.92022 0.88357 0.89392 0.93777 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.67 13.67 55.49 0.76 -23.91 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 3 Si 0.95 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.37 -11.01 9.65 30.94 0.30 -10.71 16 8 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 9 O -0.21 -5.87 8.98 -21.81 -0.20 -6.06 16 10 C 0.44 11.27 7.82 34.43 0.27 11.54 16 11 O -0.56 -15.45 15.58 -19.31 -0.30 -15.76 16 12 C -0.12 -2.41 5.88 -104.96 -0.62 -3.03 16 13 C -0.03 -0.50 9.60 -39.20 -0.38 -0.88 16 14 C -0.19 -2.61 9.28 -39.46 -0.37 -2.98 16 15 C 0.20 2.76 6.66 -83.75 -0.56 2.20 16 16 N -0.74 -7.66 5.71 -58.57 -0.33 -7.99 16 17 C 0.13 1.05 4.83 -4.04 -0.02 1.03 16 18 C 0.05 0.31 5.07 -3.82 -0.02 0.29 16 19 N -0.53 -3.75 4.73 -234.30 -1.11 -4.85 16 20 C 0.01 0.08 5.44 -3.71 -0.02 0.06 16 21 C 0.06 0.43 7.01 37.21 0.26 0.69 16 22 O -0.39 -3.25 10.83 -35.23 -0.38 -3.64 16 23 C 0.06 0.39 7.01 37.21 0.26 0.65 16 24 C 0.02 0.11 5.64 -3.71 -0.02 0.09 16 25 C 0.00 0.07 7.30 -39.32 -0.29 -0.22 16 26 F -0.15 -2.16 16.62 2.25 0.04 -2.12 16 27 C -0.06 -1.00 9.56 -39.13 -0.37 -1.37 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.15 2.72 7.60 -52.48 -0.40 2.33 16 30 H 0.13 1.53 6.70 -52.49 -0.35 1.18 16 31 H 0.40 3.72 7.94 -40.82 -0.32 3.40 16 32 H 0.06 0.52 6.31 -51.93 -0.33 0.19 16 33 H 0.07 0.66 7.93 -51.93 -0.41 0.24 16 34 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 35 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.59 6.38 -51.93 -0.33 0.26 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 43 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.14 2.62 7.64 -52.49 -0.40 2.22 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -33.40 371.99 -8.44 -41.84 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.84 Total: 2.40 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -1.66 Total: -1.59 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.68 Total: -36.75 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.88 Total: -25.46 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.40 -8.44 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869635261.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.206 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds