Wall clock time and date at job start Tue Mar 31 2020 20:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86796 * 119.99909 * 2 1 4 4 H 1.48500 * 109.47176 * 240.00393 * 3 2 1 5 5 H 1.48504 * 109.47159 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47220 * 120.00544 * 3 2 1 7 7 C 1.38792 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99994 * 180.02562 * 7 2 1 9 9 O 1.34860 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.34789 * 116.99861 * 180.02562 * 9 7 2 11 11 O 1.21551 * 119.99848 * 359.97438 * 10 9 7 12 12 C 1.47329 * 119.99964 * 180.02562 * 10 9 7 13 13 C 1.39879 * 120.06897 * 0.24396 * 12 10 9 14 14 C 1.37614 * 119.95748 * 180.25728 * 13 12 10 15 15 C 1.39171 * 120.10421 * 359.49501 * 14 13 12 16 16 N 1.39165 * 119.92701 * 180.23780 * 15 14 13 17 17 C 1.46491 * 120.00086 * 359.97438 * 16 15 14 18 18 C 1.53005 * 109.47233 * 180.02562 * 17 16 15 19 19 N 1.46901 * 109.47444 * 180.02562 * 18 17 16 20 20 C 1.47016 * 110.99655 * 293.63656 * 19 18 17 21 21 C 1.53099 * 109.25805 * 177.60528 * 20 19 18 22 22 O 1.43019 * 109.25685 * 56.84780 * 21 20 19 23 23 C 1.43019 * 113.73889 * 301.32970 * 22 21 20 24 24 C 1.47010 * 111.00191 * 170.00265 * 19 18 17 25 25 C 1.39409 * 120.14565 * 0.25299 * 15 14 13 26 26 F 1.35095 * 119.98413 * 180.02562 * 25 15 14 27 27 C 1.37764 * 120.03575 * 0.02562 * 25 15 14 28 28 H 0.96995 * 119.99990 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.02234 * 0.03355 * 13 12 10 30 30 H 1.08002 * 119.95015 * 179.77645 * 14 13 12 31 31 H 0.96999 * 119.99712 * 180.02562 * 16 15 14 32 32 H 1.08996 * 109.47495 * 300.00779 * 17 16 15 33 33 H 1.08996 * 109.47064 * 60.00917 * 17 16 15 34 34 H 1.09005 * 109.47068 * 300.00301 * 18 17 16 35 35 H 1.09000 * 109.47088 * 60.00139 * 18 17 16 36 36 H 1.09000 * 109.50460 * 297.54068 * 20 19 18 37 37 H 1.09001 * 109.50731 * 57.67421 * 20 19 18 38 38 H 1.09005 * 109.50768 * 296.91610 * 21 20 19 39 39 H 1.08997 * 109.54205 * 176.80189 * 21 20 19 40 40 H 1.09002 * 109.50706 * 298.73913 * 23 22 21 41 41 H 1.08995 * 109.54310 * 178.62380 * 23 22 21 42 42 H 1.09007 * 109.50391 * 302.32572 * 24 19 18 43 43 H 1.08996 * 109.50784 * 62.41045 * 24 19 18 44 44 H 1.07997 * 120.05069 * 179.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1020 1.6964 -1.2125 5 1 1.2833 2.7465 0.0006 6 1 3.1021 1.6964 1.2124 7 6 2.0083 -1.2020 -0.0005 8 1 3.0883 -1.2020 -0.0001 9 8 1.3340 -2.3699 -0.0005 10 6 2.0681 -3.5003 -0.0005 11 8 3.2819 -3.4367 -0.0010 12 6 1.3992 -4.8130 -0.0011 13 6 0.0024 -4.8879 -0.0068 14 6 -0.6199 -6.1153 -0.0020 15 6 0.1382 -7.2824 -0.0020 16 7 -0.4951 -8.5216 -0.0021 17 6 -1.9581 -8.5966 -0.0016 18 6 -2.3936 -10.0633 -0.0012 19 7 -3.8607 -10.1386 -0.0013 20 6 -4.4151 -9.6156 1.2559 21 6 -5.9441 -9.6571 1.1894 22 8 -6.3686 -10.9973 0.9265 23 6 -5.8477 -11.5379 -0.2908 24 6 -4.3177 -11.5155 -0.2392 25 6 1.5305 -7.2128 -0.0017 26 9 2.2632 -8.3478 -0.0023 27 6 2.1597 -5.9873 -0.0007 28 1 -0.4850 0.8400 0.0004 29 1 -0.5872 -3.9831 -0.0113 30 1 -1.6984 -6.1729 -0.0027 31 1 0.0323 -9.3357 -0.0018 32 1 -2.3470 -8.1022 0.8885 33 1 -2.3475 -8.1019 -0.8914 34 1 -2.0047 -10.5581 -0.8913 35 1 -2.0042 -10.5578 0.8887 36 1 -4.0702 -10.2286 2.0886 37 1 -4.0849 -8.5867 1.3992 38 1 -6.2916 -9.0019 0.3905 39 1 -6.3595 -9.3237 2.1403 40 1 -6.1923 -10.9374 -1.1326 41 1 -6.1927 -12.5649 -0.4107 42 1 -3.9162 -11.8735 -1.1873 43 1 -3.9706 -12.1589 0.5691 44 1 3.2383 -5.9331 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869635261.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:37 Heat of formation + Delta-G solvation = -152.361970 kcal Electronic energy + Delta-G solvation = -28110.413139 eV Core-core repulsion = 23748.862049 eV Total energy + Delta-G solvation = -4361.551091 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.88350 -41.23225 -40.62770 -39.94081 -37.78850 -37.15059 -36.04536 -34.29781 -32.26644 -31.86950 -31.70173 -29.70074 -27.70451 -26.87893 -25.05164 -24.46245 -24.16999 -22.66071 -21.73621 -21.36480 -19.88503 -19.34104 -18.70165 -17.80924 -17.27276 -17.19543 -17.13865 -16.86007 -16.55241 -16.49421 -16.35435 -16.20653 -16.03619 -16.00209 -15.39716 -15.19129 -14.87259 -14.83304 -14.51349 -14.09897 -13.71969 -13.65654 -13.37485 -13.30036 -13.15084 -12.94510 -12.67458 -12.41293 -12.37388 -12.33246 -12.15143 -12.02672 -11.96416 -11.54733 -11.14259 -11.12881 -10.68555 -10.67962 -9.98219 -9.48688 -8.57867 -8.54146 -6.30366 -0.18872 0.16482 1.35772 1.39975 1.51353 1.76435 1.98986 2.11618 2.67731 2.68174 2.85826 2.99448 3.05246 3.19090 3.66965 3.72787 3.92786 3.94959 4.03815 4.11531 4.17925 4.20236 4.29197 4.33011 4.33482 4.43617 4.45238 4.60866 4.73122 4.80936 4.83461 4.85637 4.87572 4.91960 5.02435 5.04095 5.10525 5.27858 5.41771 5.52515 5.83163 5.84327 5.86352 6.07522 6.18579 6.52438 6.63540 6.90622 7.75352 8.66179 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015553 B = 0.002076 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.839286 B =13481.385025 C =15110.769103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.002 4.002 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.263 1.263 7 C -0.421 4.421 8 H 0.080 0.920 9 O -0.230 6.230 10 C 0.439 3.561 11 O -0.589 6.589 12 C -0.159 4.159 13 C -0.023 4.023 14 C -0.173 4.173 15 C 0.231 3.769 16 N -0.724 5.724 17 C 0.124 3.876 18 C 0.052 3.948 19 N -0.540 5.540 20 C 0.012 3.988 21 C 0.060 3.940 22 O -0.408 6.408 23 C 0.060 3.940 24 C 0.020 3.980 25 C 0.004 3.996 26 F -0.139 7.139 27 C -0.054 4.054 28 H 0.280 0.720 29 H 0.134 0.866 30 H 0.168 0.832 31 H 0.410 0.590 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.099 0.901 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.040 0.960 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 -24.279 0.127 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.202 4.202 3 Si 0.836 3.164 4 H -0.187 1.187 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.098 0.902 9 O -0.138 6.138 10 C 0.290 3.710 11 O -0.489 6.489 12 C -0.163 4.163 13 C -0.042 4.042 14 C -0.196 4.196 15 C 0.123 3.877 16 N -0.352 5.352 17 C 0.000 4.000 18 C -0.076 4.076 19 N -0.265 5.265 20 C -0.116 4.116 21 C -0.017 4.017 22 O -0.327 6.327 23 C -0.017 4.017 24 C -0.108 4.108 25 C -0.020 4.020 26 F -0.118 7.118 27 C -0.074 4.074 28 H 0.090 0.910 29 H 0.152 0.848 30 H 0.186 0.814 31 H 0.247 0.753 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.059 0.941 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.049 -23.995 -0.136 27.805 hybrid contribution 1.670 0.062 0.516 1.749 sum -12.379 -23.933 0.380 26.947 Atomic orbital electron populations 1.70042 1.07486 1.29573 1.46154 1.26522 0.96962 1.02124 0.94637 0.84690 0.77650 0.74318 0.79726 1.18709 1.18105 1.18721 1.21425 0.92274 0.81129 1.54790 0.90179 1.83913 1.39610 1.13762 1.76501 1.21570 0.85745 0.86477 0.77205 1.90577 1.16695 1.88587 1.53079 1.18667 0.94449 0.88906 1.14231 1.21350 0.92258 0.99187 0.91426 1.20655 1.01135 0.88530 1.09241 1.17825 0.88842 0.88136 0.92934 1.44412 1.06816 1.04089 1.79888 1.21458 0.78118 0.97509 1.02913 1.22137 0.87513 0.95475 1.02492 1.62095 1.08224 1.21656 1.34555 1.22930 0.96433 1.01966 0.90286 1.22785 0.92720 0.83434 1.02719 1.87970 1.72350 1.30049 1.42373 1.22811 0.91758 1.00463 0.86664 1.22829 0.96983 0.88390 1.02626 1.16646 0.87689 0.81656 1.16023 1.91433 1.77128 1.48066 1.95171 1.20822 1.00822 0.89646 0.96071 0.91011 0.84795 0.81425 0.75312 0.91046 0.90415 0.88926 0.93647 0.94230 0.88292 0.91965 0.87259 0.92045 0.86897 0.88028 0.94143 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.38 13.67 21.63 0.30 -52.09 16 2 C 0.00 -0.09 5.49 84.88 0.47 0.38 16 3 Si 1.02 43.63 29.55 68.60 2.03 45.66 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.42 -26.04 9.65 67.95 0.66 -25.39 16 8 H 0.08 5.05 6.86 -2.91 -0.02 5.03 16 9 O -0.23 -13.90 8.98 10.70 0.10 -13.80 16 10 C 0.44 23.93 7.82 70.21 0.55 24.48 16 11 O -0.59 -34.77 15.58 19.67 0.31 -34.46 16 12 C -0.16 -6.70 5.88 -20.09 -0.12 -6.81 16 13 C -0.02 -0.80 9.60 22.52 0.22 -0.59 16 14 C -0.17 -4.43 9.28 22.35 0.21 -4.22 16 15 C 0.23 5.60 6.66 38.48 0.26 5.86 16 16 N -0.72 -11.94 5.71 -339.22 -1.94 -13.88 16 17 C 0.12 1.52 4.83 86.38 0.42 1.94 16 18 C 0.05 0.51 5.07 86.30 0.44 0.95 16 19 N -0.54 -5.99 4.73 -895.18 -4.23 -10.22 16 20 C 0.01 0.13 5.44 86.31 0.47 0.60 16 21 C 0.06 0.71 7.01 72.02 0.50 1.21 16 22 O -0.41 -6.24 10.83 -148.98 -1.61 -7.86 16 23 C 0.06 0.62 7.01 72.02 0.50 1.12 16 24 C 0.02 0.19 5.64 86.32 0.49 0.67 16 25 C 0.00 0.10 7.30 22.44 0.16 0.27 16 26 F -0.14 -3.78 16.62 44.97 0.75 -3.03 16 27 C -0.05 -1.96 9.56 22.56 0.22 -1.75 16 28 H 0.28 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.13 5.09 7.60 -2.91 -0.02 5.07 16 30 H 0.17 3.15 6.70 -2.91 -0.02 3.13 16 31 H 0.41 5.84 7.94 -92.71 -0.74 5.11 16 32 H 0.07 0.86 6.31 -2.39 -0.02 0.84 16 33 H 0.08 1.02 7.93 -2.39 -0.02 1.00 16 34 H 0.09 0.78 8.04 -2.38 -0.02 0.76 16 35 H 0.05 0.45 8.12 -2.39 -0.02 0.43 16 36 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.10 0.96 6.38 -2.39 -0.02 0.94 16 38 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.68 8.09 -2.38 -0.02 0.66 16 43 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.13 5.08 7.64 -2.91 -0.02 5.06 16 Total: -1.00 -76.09 371.99 1.43 -74.65 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.31 Total: 16.31 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.43 Total: -1.27 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -5.87 Total: -76.19 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -1.21 Total: -56.12 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.75 Total: -3.03 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -76.09 1.43 -74.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869635261.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.709 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds