Wall clock time and date at job start Tue Mar 31 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34632 * 117.00106 * 2 1 4 4 O 1.21513 * 119.99830 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00187 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99820 * 180.02562 * 5 3 2 7 7 C 1.53007 * 109.46689 * 180.02562 * 6 5 3 8 8 C 1.52995 * 109.46816 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47144 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99850 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00338 * 179.97438 * 9 8 7 12 12 C 1.37123 * 119.99834 * 0.02562 * 11 9 8 13 13 H 1.08002 * 120.00251 * 0.02562 * 12 11 9 14 14 C 1.38884 * 120.00069 * 179.72142 * 12 11 9 15 15 N 1.31434 * 120.00013 * 0.27577 * 14 12 11 16 16 Si 1.86803 * 120.00065 * 180.27735 * 14 12 11 17 17 H 1.48498 * 109.47174 * 90.00101 * 16 14 12 18 18 H 1.48501 * 109.47062 * 210.00052 * 16 14 12 19 19 H 1.48495 * 109.46833 * 329.99675 * 16 14 12 20 20 C 1.39845 * 120.00465 * 179.97438 * 11 9 8 21 21 C 1.38976 * 120.05097 * 269.73459 * 20 11 9 22 22 C 1.38046 * 119.94689 * 179.69612 * 21 20 11 23 23 C 1.38540 * 120.04989 * 0.57415 * 22 21 20 24 24 F 1.35096 * 119.94590 * 179.74623 * 23 22 21 25 25 C 1.38499 * 120.10222 * 359.71484 * 23 22 21 26 26 C 1.38084 * 120.05391 * 359.97438 * 25 23 22 27 27 C 1.50702 * 120.02351 * 179.97438 * 26 25 23 28 28 H 1.09003 * 109.47175 * 299.99445 * 1 2 3 29 29 H 1.09000 * 109.47533 * 59.99320 * 1 2 3 30 30 H 1.09005 * 109.46944 * 179.97438 * 1 2 3 31 31 H 0.96993 * 119.99895 * 0.02562 * 5 3 2 32 32 H 1.08992 * 109.47023 * 60.00028 * 6 5 3 33 33 H 1.09000 * 109.47075 * 299.99620 * 6 5 3 34 34 H 1.08994 * 109.47188 * 59.99504 * 7 6 5 35 35 H 1.09000 * 109.46651 * 299.99389 * 7 6 5 36 36 H 1.08997 * 109.47498 * 59.99267 * 8 7 6 37 37 H 1.09005 * 109.47342 * 299.99271 * 8 7 6 38 38 H 0.96991 * 119.99839 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.02753 * 359.96369 * 21 20 11 40 40 H 1.08003 * 119.97423 * 180.27003 * 22 21 20 41 41 H 1.08001 * 119.96796 * 180.02562 * 25 23 22 42 42 H 1.08997 * 109.47503 * 270.02178 * 27 26 25 43 43 H 1.09007 * 109.47028 * 30.02534 * 27 26 25 44 44 H 1.09007 * 109.46686 * 150.02124 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0742 2.5755 0.0011 7 6 5.5911 2.3750 0.0010 8 6 6.2856 3.7382 0.0022 9 6 7.7796 3.5408 0.0027 10 8 8.2432 2.4200 0.0017 11 7 8.6006 4.6096 0.0033 12 6 8.0765 5.8767 0.0039 13 1 7.0058 6.0183 0.0044 14 6 8.9225 6.9781 0.0104 15 7 10.2256 6.8059 0.0104 16 14 8.2085 8.7043 0.0191 17 1 8.0184 9.1543 1.4214 18 1 9.1402 9.6289 -0.6754 19 1 6.8994 8.7019 -0.6819 20 6 9.9870 4.4264 0.0043 21 6 10.6769 4.3408 1.2077 22 6 12.0446 4.1537 1.2063 23 6 12.7311 4.0632 0.0064 24 9 14.0703 3.8852 0.0074 25 6 12.0466 4.1542 -1.1942 26 6 10.6776 4.3350 -1.1977 27 6 9.9335 4.4345 -2.5044 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9374 0.4567 0.0005 32 1 3.7810 3.1322 0.8910 33 1 3.7817 3.1327 -0.8889 34 1 5.8839 1.8183 -0.8892 35 1 5.8839 1.8177 0.8908 36 1 5.9927 4.2945 0.8926 37 1 5.9929 4.2960 -0.8874 38 1 10.8163 7.5752 0.0145 39 1 10.1427 4.4163 2.1434 40 1 12.5805 4.0828 2.1413 41 1 12.5839 4.0830 -2.1283 42 1 9.8889 5.4772 -2.8187 43 1 10.4518 3.8481 -3.2632 44 1 8.9216 4.0500 -2.3764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875982941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:53 Heat of formation + Delta-G solvation = -147.982758 kcal Electronic energy + Delta-G solvation = -29115.479068 eV Core-core repulsion = 24754.117874 eV Total energy + Delta-G solvation = -4361.361194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.66601 -41.47841 -41.28983 -39.14474 -37.94729 -36.63825 -36.36506 -33.69718 -33.52790 -33.29786 -30.59869 -28.95072 -27.95385 -27.28589 -26.50628 -23.94542 -22.92676 -22.37355 -22.17130 -20.94306 -19.74257 -19.25741 -18.13572 -17.92202 -17.73743 -17.68315 -17.43288 -16.64558 -16.52410 -16.35784 -16.15502 -15.68154 -15.30842 -15.04431 -14.99128 -14.53740 -14.45195 -14.24952 -14.09614 -14.02905 -13.70550 -13.21521 -13.11552 -12.97483 -12.93695 -12.87088 -12.71006 -12.55135 -12.33117 -12.13050 -12.01287 -11.95181 -11.79959 -11.77117 -11.75429 -11.23269 -10.41867 -10.24862 -9.90253 -9.54360 -9.30551 -7.88443 -5.87365 0.59454 0.63682 1.21291 1.45750 1.53407 1.61261 1.71178 2.00450 2.30578 2.87459 2.96653 3.26706 3.35058 3.53510 3.91232 4.01947 4.09984 4.10992 4.21855 4.37140 4.37804 4.38936 4.53347 4.63989 4.66392 4.68413 4.75079 4.79098 4.85067 4.91245 4.97047 5.10752 5.15374 5.23375 5.35179 5.37968 5.39838 5.43508 5.48276 5.58143 5.80191 5.96511 6.19925 6.36818 6.59058 7.16464 7.26748 7.56318 7.97661 8.78906 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013545 B = 0.002734 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.714472 B =10238.858871 C =11684.134012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.642 3.358 4 O -0.609 6.609 5 N -0.698 5.698 6 C 0.144 3.856 7 C -0.098 4.098 8 C -0.110 4.110 9 C 0.455 3.545 10 O -0.625 6.625 11 N -0.425 5.425 12 C -0.350 4.350 13 H 0.125 0.875 14 C 0.000 4.000 15 N -0.876 5.876 16 Si 0.984 3.016 17 H -0.281 1.281 18 H -0.293 1.293 19 H -0.257 1.257 20 C 0.237 3.763 21 C -0.092 4.092 22 C -0.151 4.151 23 C 0.056 3.944 24 F -0.154 7.154 25 C -0.150 4.150 26 C -0.062 4.062 27 C -0.085 4.085 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.419 0.581 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.266 0.734 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -7.131 -1.210 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.289 6.289 3 C 0.395 3.605 4 O -0.500 6.500 5 N -0.357 5.357 6 C 0.021 3.979 7 C -0.136 4.136 8 C -0.150 4.150 9 C 0.247 3.753 10 O -0.512 6.512 11 N -0.142 5.142 12 C -0.476 4.476 13 H 0.142 0.858 14 C -0.203 4.203 15 N -0.513 5.513 16 Si 0.809 3.191 17 H -0.207 1.207 18 H -0.219 1.219 19 H -0.181 1.181 20 C 0.145 3.855 21 C -0.112 4.112 22 C -0.170 4.170 23 C 0.037 3.963 24 F -0.133 7.133 25 C -0.169 4.169 26 C -0.064 4.064 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.256 0.744 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.870 -7.055 -1.218 12.193 hybrid contribution 0.479 1.027 0.266 1.164 sum -9.391 -6.028 -0.952 11.200 Atomic orbital electron populations 1.23503 0.72780 1.05629 1.02580 1.86255 1.25856 1.30028 1.86799 1.18329 0.83843 0.82235 0.76125 1.90978 1.65488 1.36103 1.57474 1.44683 1.02544 1.11548 1.76953 1.21340 0.91009 0.82472 1.03040 1.21334 0.91615 0.96891 1.03779 1.21264 0.89717 0.98665 1.05327 1.20868 0.90280 0.83226 0.80907 1.90562 1.78699 1.24708 1.57250 1.41609 1.02296 1.06603 1.63673 1.20168 0.94583 0.80386 1.52466 0.85770 1.25932 0.95461 1.02905 0.96037 1.69997 1.02658 1.31109 1.47545 0.85032 0.78312 0.77745 0.77987 1.20696 1.21884 1.18086 1.17098 0.83942 0.92112 0.92313 1.20748 0.93558 0.99706 0.97186 1.20784 0.94222 1.04983 0.97046 1.17490 0.76590 1.07248 0.94972 1.91385 1.30713 1.93606 1.97548 1.20738 0.93876 1.05333 0.96991 1.19729 0.92946 0.98173 0.95503 1.20443 0.99019 1.01509 0.93227 0.92077 0.92062 0.84565 0.74443 0.90899 0.90827 0.90965 0.91103 0.88239 0.88106 0.92291 0.87574 0.84355 0.84267 0.91955 0.90711 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 10.56 113.37 1.20 1.89 16 2 O -0.38 -7.83 10.61 -55.42 -0.59 -8.42 16 3 C 0.64 16.29 8.75 129.79 1.14 17.43 16 4 O -0.61 -19.32 16.13 19.80 0.32 -19.00 16 5 N -0.70 -15.14 5.56 -590.84 -3.29 -18.42 16 6 C 0.14 3.25 5.67 86.38 0.49 3.74 16 7 C -0.10 -2.51 4.62 30.59 0.14 -2.37 16 8 C -0.11 -3.36 4.07 29.85 0.12 -3.24 16 9 C 0.46 19.04 6.94 87.66 0.61 19.65 16 10 O -0.62 -29.52 15.95 -3.05 -0.05 -29.57 16 11 N -0.43 -19.12 1.80 -458.88 -0.83 -19.94 16 12 C -0.35 -15.41 9.39 84.02 0.79 -14.62 16 13 H 0.12 4.89 6.30 -2.91 -0.02 4.87 16 14 C 0.00 -0.01 5.45 84.91 0.46 0.45 16 15 N -0.88 -42.09 9.32 21.65 0.20 -41.88 16 16 Si 0.98 36.81 29.55 68.60 2.03 38.83 16 17 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 18 H -0.29 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 20 C 0.24 11.03 2.20 38.20 0.08 11.11 16 21 C -0.09 -4.17 9.04 22.40 0.20 -3.97 16 22 C -0.15 -6.20 10.02 22.30 0.22 -5.97 16 23 C 0.06 2.29 7.30 22.40 0.16 2.46 16 24 F -0.15 -5.86 17.26 44.97 0.78 -5.08 16 25 C -0.15 -6.09 9.67 22.30 0.22 -5.87 16 26 C -0.06 -2.70 5.01 -19.74 -0.10 -2.80 16 27 C -0.09 -3.31 9.77 71.24 0.70 -2.62 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.14 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.42 7.34 8.58 -92.71 -0.80 6.55 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 35 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 36 H 0.10 2.85 7.90 -2.39 -0.02 2.83 16 37 H 0.10 2.86 7.90 -2.38 -0.02 2.84 16 38 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 39 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 40 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 41 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 42 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.07 2.44 8.09 -2.38 -0.02 2.42 16 44 H 0.05 2.02 6.91 -2.38 -0.02 2.01 16 Total: -1.00 -62.28 379.16 5.25 -57.04 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.24 Total: 31.18 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 6.43 Total: 15.27 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.91 Total: -80.25 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -0.32 Total: -56.99 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.78 Total: -5.08 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.83 kcal Total: -62.28 5.25 -57.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875982941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.944 kcal (2) G-P(sol) polarization free energy of solvation -62.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds