Wall clock time and date at job start Tue Mar 31 2020 21:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37733 * 120.01627 * 2 1 4 4 C 1.38610 * 120.37373 * 179.97438 * 3 2 1 5 5 C 1.38131 * 120.41245 * 0.30218 * 4 3 2 6 6 F 1.35096 * 119.98317 * 179.69359 * 5 4 3 7 7 C 1.39128 * 120.02742 * 359.44776 * 5 4 3 8 8 N 1.38984 * 120.18353 * 180.24871 * 7 5 4 9 9 C 1.39810 * 120.02339 * 179.97438 * 2 1 3 10 10 C 1.47296 * 120.20030 * 0.05143 * 9 2 1 11 11 O 1.21530 * 120.00191 * 89.99725 * 10 9 2 12 12 O 1.34769 * 120.00193 * 269.99464 * 10 9 2 13 13 C 1.45195 * 117.00228 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47293 * 330.00058 * 13 12 10 15 15 C 1.52999 * 109.47410 * 90.00025 * 13 12 10 16 16 C 1.50696 * 109.47074 * 210.00019 * 13 12 10 17 17 O 1.21283 * 120.00009 * 0.02562 * 16 13 12 18 18 N 1.34784 * 120.00410 * 179.97438 * 16 13 12 19 19 C 1.46500 * 119.99346 * 0.02562 * 18 16 13 20 20 C 1.46494 * 120.00209 * 179.97438 * 18 16 13 21 21 C 1.50695 * 109.47099 * 90.00158 * 20 18 16 22 22 H 1.08001 * 120.00299 * 0.02562 * 21 20 18 23 23 C 1.37883 * 120.00118 * 179.97438 * 21 20 18 24 24 N 1.31516 * 119.99981 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99794 * 359.97438 * 23 21 20 26 26 H 1.48503 * 109.46908 * 90.00325 * 25 23 21 27 27 H 1.48497 * 109.47327 * 209.99883 * 25 23 21 28 28 H 1.48499 * 109.47354 * 330.00465 * 25 23 21 29 29 H 1.09001 * 109.46640 * 90.00244 * 1 2 3 30 30 H 1.09002 * 109.46990 * 209.99739 * 1 2 3 31 31 H 1.08996 * 109.47450 * 330.00185 * 1 2 3 32 32 H 1.07996 * 119.81503 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.78950 * 180.02562 * 4 3 2 34 34 H 0.97002 * 119.99959 * 180.27433 * 8 7 5 35 35 H 0.96998 * 120.00015 * 0.27710 * 8 7 5 36 36 H 1.09002 * 109.46866 * 59.99770 * 15 13 12 37 37 H 1.08994 * 109.47632 * 179.97438 * 15 13 12 38 38 H 1.08999 * 109.47078 * 300.00307 * 15 13 12 39 39 H 1.09001 * 109.47640 * 89.99962 * 19 18 16 40 40 H 1.08999 * 109.46719 * 209.99977 * 19 18 16 41 41 H 1.08997 * 109.47462 * 329.99666 * 19 18 16 42 42 H 1.09000 * 109.46933 * 210.00106 * 20 18 16 43 43 H 1.08995 * 109.47215 * 329.99738 * 20 18 16 44 44 H 0.96998 * 119.99678 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1926 0.0000 4 6 3.5821 1.2013 0.0005 5 6 4.2888 0.0144 -0.0052 6 9 5.6396 0.0330 -0.0109 7 6 3.6100 -1.2001 0.0000 8 7 4.3179 -2.3962 -0.0005 9 6 2.2066 -1.2105 0.0005 10 6 1.4751 -2.4890 0.0000 11 8 1.1741 -3.0164 -1.0527 12 8 1.1396 -3.0740 1.1668 13 6 0.4201 -4.3328 1.0903 14 1 -0.1821 -4.3524 0.1820 15 6 1.4196 -5.4909 1.0646 16 6 -0.4786 -4.4715 2.2919 17 8 -0.5100 -3.5955 3.1301 18 7 -1.2483 -5.5687 2.4348 19 6 -1.2108 -6.6266 1.4221 20 6 -2.1215 -5.7038 3.6033 21 6 -3.4701 -5.1065 3.2943 22 1 -3.6581 -4.6703 2.3244 23 6 -4.4644 -5.1178 4.2495 24 7 -5.6415 -4.5970 3.9796 25 14 -4.1399 -5.8743 5.9264 26 1 -3.6124 -4.8336 6.8451 27 1 -5.4059 -6.4233 6.4751 28 1 -3.1435 -6.9671 5.7921 29 1 -0.3632 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6533 2.1263 -0.0004 33 1 4.1128 2.1419 0.0009 34 1 3.8419 -3.2414 -0.0009 35 1 5.2878 -2.3857 -0.0005 36 1 2.0219 -5.4712 1.9729 37 1 0.8795 -6.4358 1.0076 38 1 2.0697 -5.3905 0.1954 39 1 -0.4430 -7.3542 1.6849 40 1 -2.1808 -7.1218 1.3779 41 1 -0.9808 -6.1909 0.4498 42 1 -2.2392 -6.7592 3.8488 43 1 -1.6781 -5.1810 4.4506 44 1 -6.3411 -4.6053 4.6515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920571932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:50 Heat of formation + Delta-G solvation = -152.468997 kcal Electronic energy + Delta-G solvation = -29674.977398 eV Core-core repulsion = 25313.421666 eV Total energy + Delta-G solvation = -4361.555732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.87544 -42.21260 -40.91111 -39.85683 -37.67058 -36.80101 -36.23452 -34.89453 -33.58062 -32.96409 -30.61729 -30.07078 -27.92404 -27.76325 -26.19859 -25.37706 -23.84809 -22.63892 -22.05617 -20.51818 -19.64654 -19.16006 -18.97908 -18.50488 -17.99998 -17.68313 -17.29179 -16.98266 -16.67694 -16.54185 -16.51242 -16.08761 -15.64829 -15.28752 -15.08760 -14.88423 -14.68550 -14.47267 -14.39917 -14.23484 -13.77680 -13.69666 -13.51571 -13.46311 -13.15266 -13.09076 -12.87151 -12.83729 -12.76262 -12.60261 -12.38560 -12.05052 -12.00553 -11.79909 -11.75932 -11.70866 -10.84443 -10.72470 -9.88829 -9.52611 -8.75442 -8.35190 -6.41412 -0.18938 0.25095 0.73147 1.19995 1.33820 1.37946 1.46011 1.53317 2.25184 2.30653 2.42819 2.51242 2.99138 3.12337 3.31428 3.45638 3.59513 3.72384 3.77354 3.80856 4.11091 4.22326 4.27440 4.45656 4.51017 4.56335 4.60410 4.61410 4.72894 4.76297 4.78736 4.82471 4.89078 5.03055 5.06640 5.10782 5.17145 5.38133 5.42098 5.49482 5.65072 6.08117 6.19019 6.34249 6.49759 6.51383 6.60108 7.12041 7.26032 8.81798 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.002816 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.089795 B = 9941.575438 C =10593.257700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.010 4.010 3 C -0.147 4.147 4 C -0.064 4.064 5 C -0.004 4.004 6 F -0.139 7.139 7 C 0.231 3.769 8 N -0.854 5.854 9 C -0.201 4.201 10 C 0.528 3.472 11 O -0.511 6.511 12 O -0.334 6.334 13 C 0.072 3.928 14 H 0.112 0.888 15 C -0.169 4.169 16 C 0.501 3.499 17 O -0.574 6.574 18 N -0.595 5.595 19 C 0.065 3.935 20 C 0.224 3.776 21 C -0.541 4.541 22 H 0.027 0.973 23 C 0.011 3.989 24 N -0.945 5.945 25 Si 0.949 3.051 26 H -0.277 1.277 27 H -0.275 1.275 28 H -0.233 1.233 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.103 0.897 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.403 0.597 35 H 0.417 0.583 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.458 4.196 -10.488 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.011 4.011 3 C -0.167 4.167 4 C -0.083 4.083 5 C -0.028 4.028 6 F -0.118 7.118 7 C 0.122 3.878 8 N -0.393 5.393 9 C -0.207 4.207 10 C 0.371 3.629 11 O -0.399 6.399 12 O -0.250 6.250 13 C 0.014 3.986 14 H 0.129 0.871 15 C -0.226 4.226 16 C 0.288 3.712 17 O -0.454 6.454 18 N -0.327 5.327 19 C -0.077 4.077 20 C 0.102 3.898 21 C -0.580 4.580 22 H 0.045 0.955 23 C -0.187 4.187 24 N -0.585 5.585 25 Si 0.771 3.229 26 H -0.203 1.203 27 H -0.200 1.200 28 H -0.156 1.156 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.122 0.878 32 H 0.189 0.811 33 H 0.192 0.808 34 H 0.233 0.767 35 H 0.249 0.751 36 H 0.093 0.907 37 H 0.135 0.865 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.217 4.445 -10.288 24.883 hybrid contribution -0.407 -0.547 0.633 0.930 sum 21.810 3.898 -9.655 24.168 Atomic orbital electron populations 1.20992 0.90261 1.03584 1.03628 1.19943 0.96471 0.91279 0.93415 1.20913 0.93160 0.97725 1.04906 1.21484 0.94601 0.97409 0.94832 1.16981 0.77165 0.92768 1.15854 1.91456 1.28115 1.97143 1.95093 1.17503 0.89177 0.87488 0.93659 1.42242 1.10214 1.04450 1.82356 1.18254 0.91137 0.90842 1.20514 1.21288 0.75845 0.84309 0.81425 1.90838 1.51880 1.64375 1.32856 1.86835 1.67127 1.36715 1.34306 1.22638 0.94805 0.83700 0.97426 0.87089 1.22462 0.98942 0.96617 1.04530 1.20598 0.81053 0.82072 0.87442 1.90676 1.68297 1.41094 1.45303 1.47794 1.40472 1.19551 1.24919 1.22311 1.04272 0.90389 0.90703 1.19438 0.87734 0.97703 0.84901 1.21548 0.96913 1.39178 1.00343 0.95473 1.25875 0.94350 0.95330 1.03131 1.70052 1.04898 1.46767 1.36740 0.85699 0.78834 0.79868 0.78458 1.20271 1.20027 1.15594 0.89088 0.94517 0.87844 0.81136 0.80796 0.76749 0.75087 0.90724 0.86496 0.89243 0.88526 0.90617 0.89774 0.92072 0.96043 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.62 71.24 0.69 -2.39 16 2 C -0.01 -0.24 5.91 -19.60 -0.12 -0.35 16 3 C -0.15 -2.43 9.67 22.24 0.22 -2.21 16 4 C -0.06 -0.98 10.00 22.33 0.22 -0.76 16 5 C 0.00 -0.08 7.30 22.46 0.16 0.09 16 6 F -0.14 -2.62 16.63 44.97 0.75 -1.87 16 7 C 0.23 5.23 6.77 38.74 0.26 5.50 16 8 N -0.85 -15.54 8.99 -50.77 -0.46 -16.00 16 9 C -0.20 -5.37 5.77 -20.00 -0.12 -5.49 16 10 C 0.53 16.20 4.58 70.20 0.32 16.52 16 11 O -0.51 -16.63 16.37 19.74 0.32 -16.31 16 12 O -0.33 -11.44 9.43 -50.41 -0.48 -11.92 16 13 C 0.07 2.30 2.18 29.85 0.07 2.37 16 14 H 0.11 3.45 6.42 -2.39 -0.02 3.43 16 15 C -0.17 -3.56 9.19 71.98 0.66 -2.90 16 16 C 0.50 21.04 7.15 87.65 0.63 21.67 16 17 O -0.57 -30.14 16.08 15.76 0.25 -29.88 16 18 N -0.60 -23.71 2.86 -851.16 -2.43 -26.14 16 19 C 0.06 1.73 8.80 127.77 1.12 2.85 16 20 C 0.22 10.69 4.23 85.63 0.36 11.05 16 21 C -0.54 -31.72 9.94 25.60 0.25 -31.46 16 22 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 23 C 0.01 0.67 5.47 84.66 0.46 1.13 16 24 N -0.94 -59.61 13.96 21.45 0.30 -59.32 16 25 Si 0.95 43.77 27.47 68.60 1.88 45.66 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.23 -9.45 6.54 99.48 0.65 -8.80 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.04 1.14 7.08 -2.39 -0.02 1.12 16 31 H 0.10 1.97 8.08 -2.39 -0.02 1.95 16 32 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.40 7.25 7.68 -92.71 -0.71 6.54 16 35 H 0.42 5.68 8.31 -92.71 -0.77 4.91 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.93 4.53 -2.39 -0.01 1.92 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.79 6.95 -2.39 -0.02 1.77 16 40 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 41 H 0.08 1.88 6.01 -2.39 -0.01 1.87 16 42 H 0.06 2.59 7.13 -2.39 -0.02 2.58 16 43 H 0.02 1.10 6.85 -2.39 -0.02 1.09 16 44 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -83.39 373.15 4.88 -78.51 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.46 Total: 21.67 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 5.20 Total: 15.61 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -2.59 Total: -101.45 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: 0.10 Total: -58.11 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.75 Total: -1.87 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.66 kcal Total: -83.39 4.88 -78.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920571932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.963 kcal (2) G-P(sol) polarization free energy of solvation -83.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds