Wall clock time and date at job start Tue Mar 31 2020 20:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.46507 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 14 12 17 17 N 1.46901 * 109.46654 * 179.97438 * 16 15 14 18 18 C 1.47194 * 110.99782 * 169.99566 * 17 16 15 19 19 C 1.52988 * 108.72726 * 54.37115 * 18 17 16 20 20 N 1.46010 * 110.04032 * 50.29048 * 19 18 17 21 21 C 1.33720 * 122.92811 * 341.83942 * 20 19 18 22 22 O 1.21280 * 118.61990 * 181.69294 * 21 20 19 23 23 C 1.46894 * 111.00233 * 292.89107 * 17 16 15 24 24 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 25 25 F 1.39903 * 109.47440 * 60.00123 * 24 9 7 26 26 F 1.39899 * 109.47255 * 180.02562 * 24 9 7 27 27 F 1.39900 * 109.47102 * 299.99874 * 24 9 7 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 30 30 H 0.97001 * 120.00313 * 359.97438 * 14 12 11 31 31 H 1.09005 * 109.46616 * 299.99557 * 15 14 12 32 32 H 1.08993 * 109.46852 * 59.99259 * 15 14 12 33 33 H 1.08996 * 109.47132 * 299.99032 * 16 15 14 34 34 H 1.09000 * 109.47229 * 59.99831 * 16 15 14 35 35 H 1.09005 * 109.59335 * 174.14275 * 18 17 16 36 36 H 1.08998 * 109.59388 * 294.59669 * 18 17 16 37 37 H 1.08996 * 109.37055 * 170.46254 * 19 18 17 38 38 H 1.08998 * 109.37311 * 290.11343 * 19 18 17 39 39 H 0.97002 * 118.53350 * 161.81653 * 20 19 18 40 40 H 1.09001 * 109.38985 * 47.09118 * 23 17 16 41 41 H 1.09002 * 109.38736 * 166.77669 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 2.3147 -7.1408 -1.0299 16 6 3.4848 -8.1194 -0.9116 17 7 3.0856 -9.4270 -1.4492 18 6 4.2467 -10.3233 -1.5726 19 6 4.9483 -10.4078 -0.2157 20 7 3.9772 -10.7107 0.8318 21 6 2.6606 -10.5373 0.6745 22 8 1.9266 -10.7849 1.6077 23 6 2.0528 -10.0484 -0.6096 24 6 0.3719 -2.5805 1.2490 25 9 -0.5373 -1.5171 1.2496 26 9 -0.3272 -3.7922 1.2493 27 9 1.1766 -2.5067 2.3910 28 1 -0.4850 0.8401 0.0004 29 1 3.0969 -3.4866 0.3545 30 1 3.6064 -5.7108 -0.1383 31 1 1.4635 -7.5216 -0.4654 32 1 2.0364 -7.0326 -2.0782 33 1 4.3356 -7.7385 -1.4764 34 1 3.7634 -8.2276 0.1366 35 1 3.9117 -11.3160 -1.8734 36 1 4.9370 -9.9268 -2.3170 37 1 5.7030 -11.1935 -0.2473 38 1 5.4299 -9.4546 0.0023 39 1 4.3016 -11.0533 1.6793 40 1 1.2779 -9.3149 -0.3869 41 1 1.6100 -10.8892 -1.1435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932911906.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:30 Heat of formation + Delta-G solvation = -213.905543 kcal Electronic energy + Delta-G solvation = -30462.223383 eV Core-core repulsion = 25576.066784 eV Total energy + Delta-G solvation = -4886.156599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.40024 -48.03631 -47.71266 -41.76331 -40.88447 -38.68162 -36.78508 -36.05509 -34.94938 -34.38164 -31.18314 -30.81209 -29.46063 -26.69653 -26.48984 -24.47803 -23.56754 -23.13827 -21.89650 -20.31311 -19.71660 -18.86666 -18.77593 -18.57564 -18.35252 -18.00002 -17.55195 -17.07619 -16.93734 -16.63858 -16.35599 -15.89118 -15.83648 -15.26947 -15.06680 -15.00482 -14.84938 -14.69452 -14.49623 -14.43421 -14.27681 -14.01247 -13.93673 -13.84060 -13.57028 -13.03012 -12.88583 -12.74404 -12.61054 -12.59552 -12.26355 -12.21915 -12.17212 -11.62631 -11.57917 -11.29914 -10.65970 -10.31345 -10.18406 -9.77119 -9.42480 -8.19007 -6.50247 1.44208 1.47945 1.51282 1.58473 1.66031 2.14285 2.16561 2.38775 2.57711 2.81089 2.96594 3.40809 3.49737 3.73369 3.80666 3.85733 3.90062 4.03268 4.10177 4.21314 4.27374 4.45056 4.52141 4.63618 4.73897 4.84063 4.90688 4.96696 5.01814 5.44153 5.45737 5.54182 5.60006 5.67118 5.81194 5.85892 6.13678 6.18147 6.54985 7.06080 7.17369 7.22547 7.66289 8.73733 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021643 B = 0.002637 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.384548 B =10614.980371 C =11145.937636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.985 3.015 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.561 4.561 8 H 0.095 0.905 9 C 0.271 3.729 10 H 0.046 0.954 11 N -0.719 5.719 12 C 0.694 3.306 13 O -0.629 6.629 14 N -0.729 5.729 15 C 0.142 3.858 16 C 0.049 3.951 17 N -0.522 5.522 18 C 0.036 3.964 19 C 0.067 3.933 20 N -0.715 5.715 21 C 0.484 3.516 22 O -0.607 6.607 23 C 0.035 3.965 24 C 0.410 3.590 25 F -0.151 7.151 26 F -0.221 7.221 27 F -0.204 7.204 28 H 0.268 0.732 29 H 0.411 0.589 30 H 0.412 0.588 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.402 0.598 40 H 0.099 0.901 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.506 -18.413 -3.734 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.192 4.192 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.598 4.598 8 H 0.113 0.887 9 C 0.163 3.837 10 H 0.064 0.936 11 N -0.373 5.373 12 C 0.394 3.606 13 O -0.510 6.510 14 N -0.387 5.387 15 C 0.017 3.983 16 C -0.079 4.079 17 N -0.245 5.245 18 C -0.092 4.092 19 C -0.057 4.057 20 N -0.366 5.366 21 C 0.271 3.729 22 O -0.488 6.488 23 C -0.096 4.096 24 C 0.354 3.646 25 F -0.132 7.132 26 F -0.203 7.203 27 F -0.186 7.186 28 H 0.078 0.922 29 H 0.247 0.753 30 H 0.248 0.752 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.137 0.863 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.238 0.762 40 H 0.117 0.883 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.660 -18.423 -4.367 23.945 hybrid contribution 0.646 0.646 2.027 2.224 sum 15.307 -17.776 -2.339 23.575 Atomic orbital electron populations 1.70540 1.07580 1.28226 1.44628 1.26034 0.95890 1.03775 0.93472 0.85185 0.77949 0.76613 0.79406 1.21183 1.19029 1.18502 1.21207 0.94622 0.88181 1.55801 0.88735 1.19169 0.88417 0.86640 0.89438 0.93579 1.44959 1.17397 1.09055 1.65889 1.16241 0.84375 0.81114 0.78866 1.90898 1.21982 1.83652 1.54441 1.44702 1.16235 1.09870 1.67858 1.21105 0.97322 0.80888 0.99003 1.22298 0.97394 0.88585 0.99649 1.62418 1.11576 1.02849 1.47684 1.22829 0.91825 0.98275 0.96240 1.22429 0.91825 1.03877 0.87619 1.45691 1.05952 1.65806 1.19181 1.21633 0.83186 0.76867 0.91246 1.90764 1.60727 1.53923 1.43396 1.22555 0.96241 1.02170 0.88623 1.23447 0.80931 0.72298 0.87933 1.93373 1.69021 1.54515 1.96326 1.93065 1.81668 1.48499 1.97022 1.92978 1.74119 1.96155 1.55337 0.92182 0.75276 0.75156 0.94141 0.91509 0.86295 0.93590 0.88402 0.85353 0.86863 0.89992 0.76200 0.88320 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.97 9.50 21.45 0.20 -48.76 16 2 C 0.01 0.70 5.20 84.66 0.44 1.14 16 3 Si 0.99 40.22 29.54 68.60 2.03 42.25 16 4 H -0.29 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.56 -28.23 8.46 25.60 0.22 -28.01 16 8 H 0.09 4.30 7.74 -2.91 -0.02 4.28 16 9 C 0.27 13.79 2.21 44.24 0.10 13.89 16 10 H 0.05 2.72 7.58 -2.39 -0.02 2.70 16 11 N -0.72 -29.06 4.99 -461.42 -2.30 -31.36 16 12 C 0.69 27.74 8.10 179.05 1.45 29.19 16 13 O -0.63 -31.53 14.92 -3.98 -0.06 -31.59 16 14 N -0.73 -19.63 5.56 -478.52 -2.66 -22.29 16 15 C 0.14 3.38 5.65 86.38 0.49 3.86 16 16 C 0.05 0.66 4.13 86.30 0.36 1.02 16 17 N -0.52 -6.41 5.03 -900.89 -4.53 -10.94 16 18 C 0.04 0.17 6.03 86.24 0.52 0.69 16 19 C 0.07 0.28 6.46 86.47 0.56 0.84 16 20 N -0.71 -8.92 5.33 -466.08 -2.48 -11.41 16 21 C 0.48 10.08 7.06 87.68 0.62 10.70 16 22 O -0.61 -19.35 17.82 -3.03 -0.05 -19.41 16 23 C 0.04 0.60 5.76 85.42 0.49 1.09 16 24 C 0.41 21.86 2.81 71.98 0.20 22.06 16 25 F -0.15 -8.72 12.91 44.97 0.58 -8.14 16 26 F -0.22 -11.93 15.67 44.97 0.70 -11.23 16 27 F -0.20 -10.22 16.94 44.97 0.76 -9.46 16 28 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.41 13.50 8.55 -92.70 -0.79 12.71 16 30 H 0.41 7.75 8.49 -92.71 -0.79 6.96 16 31 H 0.04 1.18 6.36 -2.38 -0.02 1.16 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.12 0.98 8.08 -2.39 -0.02 0.96 16 34 H 0.05 0.65 6.23 -2.39 -0.01 0.64 16 35 H 0.10 0.38 8.08 -2.38 -0.02 0.36 16 36 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.11 -0.09 8.14 -2.39 -0.02 -0.10 16 38 H 0.08 0.25 7.10 -2.39 -0.02 0.23 16 39 H 0.40 4.73 8.84 -92.71 -0.82 3.91 16 40 H 0.10 2.16 6.05 -2.39 -0.01 2.14 16 41 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -79.32 345.38 -3.64 -82.95 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -1.27 Total: 22.91 kcal Atomic # 6 Polarization: 51.03 SS G_CDS: 5.44 Total: 56.47 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -11.77 Total: -124.77 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.11 Total: -50.99 kcal Atomic # 9 Polarization: -30.87 SS G_CDS: 2.05 Total: -28.82 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -79.32 -3.64 -82.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932911906.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.954 kcal (2) G-P(sol) polarization free energy of solvation -79.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds