Wall clock time and date at job start Tue Mar 31 2020 20:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99944 * 2 1 4 4 H 1.48506 * 109.46824 * 269.99939 * 3 2 1 5 5 H 1.48497 * 109.47551 * 30.00128 * 3 2 1 6 6 H 1.48500 * 109.47069 * 150.00254 * 3 2 1 7 7 C 1.38811 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99938 * 172.92841 * 7 2 1 9 9 N 1.36940 * 120.00097 * 352.92592 * 7 2 1 10 10 C 1.47167 * 126.09644 * 168.74853 * 9 7 2 11 11 C 1.53756 * 105.64518 * 149.72776 * 10 9 7 12 12 H 1.08994 * 108.85388 * 271.00095 * 11 10 9 13 13 C 1.50964 * 111.20498 * 150.25045 * 11 10 9 14 14 C 1.53163 * 111.89947 * 178.56447 * 13 11 10 15 15 N 1.49721 * 105.59362 * 99.87955 * 14 13 11 16 16 C 1.34777 * 122.75323 * 111.57454 * 15 14 13 17 17 O 1.21280 * 119.99816 * 174.46935 * 16 15 14 18 18 C 1.50702 * 120.00372 * 354.47247 * 16 15 14 19 19 H 1.09005 * 109.46386 * 15.86397 * 18 16 15 20 20 F 1.39901 * 109.46923 * 255.86861 * 18 16 15 21 21 C 1.52998 * 109.47022 * 135.86249 * 18 16 15 22 22 F 1.39891 * 109.47184 * 60.00315 * 21 18 16 23 23 F 1.39904 * 109.46796 * 180.02562 * 21 18 16 24 24 F 1.39901 * 109.47367 * 300.00025 * 21 18 16 25 25 C 1.43644 * 114.48669 * 291.60650 * 15 14 13 26 26 C 1.51107 * 114.76332 * 57.96666 * 25 15 14 27 27 C 1.51858 * 112.30739 * 274.93655 * 26 25 15 28 28 H 1.09004 * 110.94533 * 322.61589 * 27 26 25 29 29 C 1.46769 * 126.09848 * 348.79437 * 9 7 2 30 30 H 0.97005 * 119.99681 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.21549 * 268.81627 * 10 9 7 32 32 H 1.08992 * 110.21758 * 30.65471 * 10 9 7 33 33 H 1.08999 * 108.98281 * 57.96595 * 13 11 10 34 34 H 1.09009 * 108.98113 * 299.16270 * 13 11 10 35 35 H 1.08992 * 110.21511 * 218.90170 * 14 13 11 36 36 H 1.09003 * 110.21398 * 340.72872 * 14 13 11 37 37 H 1.09000 * 108.42122 * 179.33723 * 25 15 14 38 38 H 1.09001 * 108.42853 * 296.59616 * 25 15 14 39 39 H 1.09003 * 108.91277 * 35.66045 * 26 25 15 40 40 H 1.08997 * 108.91387 * 154.29314 * 26 25 15 41 41 H 1.09000 * 109.78317 * 80.63232 * 29 9 7 42 42 H 1.09001 * 109.77721 * 319.85823 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2057 -0.1157 9 7 1.3333 -2.3836 0.1450 10 6 1.8862 -3.7312 -0.0652 11 6 1.1132 -4.6509 0.8944 12 1 1.6301 -4.6732 1.8537 13 6 1.0110 -6.0527 0.3435 14 6 0.2740 -6.9914 1.3035 15 7 -1.1235 -7.0909 0.7754 16 6 -1.6216 -8.2228 0.2395 17 8 -2.7899 -8.2788 -0.0812 18 6 -0.7270 -9.4188 0.0388 19 1 0.1834 -9.2939 0.6252 20 9 -0.3971 -9.5322 -1.3160 21 6 -1.4572 -10.6840 0.4936 22 9 -2.6255 -10.8441 -0.2589 23 9 -0.6264 -11.7942 0.3078 24 9 -1.7871 -10.5705 1.8484 25 6 -1.8894 -5.8808 0.8863 26 6 -1.2840 -4.6827 0.1925 27 6 -0.2691 -3.9639 1.0639 28 1 -0.5864 -3.9569 2.1067 29 6 -0.0731 -2.5318 0.5375 30 1 -0.4850 0.8401 0.0004 31 1 1.7298 -4.0457 -1.0971 32 1 2.9492 -3.7439 0.1749 33 1 2.0151 -6.4397 0.1703 34 1 0.4744 -6.0227 -0.6049 35 1 0.7463 -7.9736 1.3065 36 1 0.2696 -6.5731 2.3100 37 1 -2.8787 -6.0595 0.4650 38 1 -2.0075 -5.6433 1.9436 39 1 -0.7923 -5.0151 -0.7218 40 1 -2.0804 -3.9858 -0.0685 41 1 -0.7167 -2.3650 -0.3263 42 1 -0.3147 -1.8143 1.3217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946597690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:11 Heat of formation + Delta-G solvation = -192.798866 kcal Electronic energy + Delta-G solvation = -31046.929766 eV Core-core repulsion = 26141.768459 eV Total energy + Delta-G solvation = -4905.161306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.70730 -48.81213 -48.09365 -47.91076 -40.66462 -38.78562 -36.18311 -33.31325 -32.80010 -31.40356 -30.72155 -27.81295 -27.48711 -25.15763 -24.22347 -23.02421 -22.61074 -20.48133 -20.20165 -19.42072 -19.07628 -18.62594 -18.39414 -17.87509 -16.96998 -16.88145 -16.13749 -15.56694 -15.06666 -14.92518 -14.89637 -14.78736 -14.69712 -14.52763 -14.48299 -14.17707 -14.15362 -14.09133 -13.62159 -13.52035 -13.10854 -12.93868 -12.75917 -12.51332 -12.03706 -11.78555 -11.67434 -11.36684 -11.18108 -10.97946 -10.82859 -10.78518 -10.40414 -10.08659 -9.95163 -9.87062 -9.70263 -9.64749 -8.98098 -8.62702 -6.85389 -5.78978 -3.12295 1.58529 1.86714 2.37376 2.97429 3.27675 3.36403 3.38636 3.41998 3.43674 3.50610 3.96747 4.34456 4.44079 4.57979 4.78085 4.88456 5.06684 5.13238 5.19472 5.41698 5.45381 5.47409 5.63962 5.72912 5.83755 5.93821 6.03325 6.09583 6.17087 6.25119 6.43044 6.53504 6.61000 6.72734 6.87941 6.93059 7.46003 7.48218 7.57618 7.74716 8.22911 9.16286 9.77426 10.46316 11.34228 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.002570 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.108907 B =10893.361489 C =11201.788747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.139 3.861 11 C -0.098 4.098 12 H 0.066 0.934 13 C -0.133 4.133 14 C 0.100 3.900 15 N -0.588 5.588 16 C 0.501 3.499 17 O -0.500 6.500 18 C 0.034 3.966 19 H 0.148 0.852 20 F -0.150 7.150 21 C 0.447 3.553 22 F -0.155 7.155 23 F -0.169 7.169 24 F -0.167 7.167 25 C 0.107 3.893 26 C -0.127 4.127 27 C -0.105 4.105 28 H 0.069 0.931 29 C 0.178 3.822 30 H 0.253 0.747 31 H 0.014 0.986 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.032 0.968 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -20.872 4.246 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.324 5.324 10 C 0.013 3.987 11 C -0.118 4.118 12 H 0.084 0.916 13 C -0.171 4.171 14 C -0.022 4.022 15 N -0.321 5.321 16 C 0.284 3.716 17 O -0.374 6.374 18 C -0.006 4.006 19 H 0.165 0.835 20 F -0.131 7.131 21 C 0.391 3.609 22 F -0.136 7.136 23 F -0.150 7.150 24 F -0.149 7.149 25 C -0.016 4.016 26 C -0.165 4.165 27 C -0.125 4.125 28 H 0.088 0.912 29 C 0.052 3.948 30 H 0.063 0.937 31 H 0.032 0.968 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.353 -20.684 4.023 21.115 hybrid contribution 0.520 0.725 -0.092 0.896 sum -0.833 -19.960 3.931 20.360 Atomic orbital electron populations 1.69951 1.04952 1.25229 1.56290 1.24847 0.95659 0.97822 1.01930 0.86149 0.78680 0.83462 0.77622 1.21537 1.21607 1.20657 1.19014 0.90665 0.82542 1.43755 0.90637 1.44321 1.08507 1.00006 1.79532 1.21293 0.95837 0.86383 0.95222 1.21813 0.97225 0.92868 0.99873 0.91550 1.21782 1.00589 0.95170 0.99551 1.22752 0.79820 1.00188 0.99396 1.48010 1.15707 1.10313 1.58071 1.19779 0.88054 0.83927 0.79852 1.90845 1.15748 1.81750 1.49016 1.22874 1.01993 0.92819 0.82950 0.83485 1.93032 1.93187 1.96313 1.30534 1.20334 0.78897 0.85422 0.76220 1.93312 1.48865 1.95875 1.75517 1.93255 1.71500 1.55338 1.94929 1.93249 1.92879 1.96003 1.32721 1.20722 0.95701 0.83439 1.01697 1.21573 0.99756 0.95455 0.99734 1.22279 0.93365 0.98304 0.98529 0.91241 1.21089 0.85993 0.89502 0.98188 0.93685 0.96810 0.94181 0.90970 0.90201 0.90175 0.88602 0.89674 0.91230 0.90999 0.90223 0.95050 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 10.67 55.49 0.59 -25.74 16 2 C -0.01 -0.16 5.43 -17.43 -0.09 -0.25 16 3 Si 0.91 21.61 29.56 -169.99 -5.02 16.58 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.27 10.27 -15.06 -0.15 -6.43 16 8 H 0.08 1.98 7.84 -52.48 -0.41 1.57 16 9 N -0.60 -14.58 3.37 -171.51 -0.58 -15.15 16 10 C 0.14 2.65 6.71 -3.28 -0.02 2.63 16 11 C -0.10 -1.42 2.62 -90.04 -0.24 -1.66 16 12 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 13 C -0.13 -1.42 4.57 -27.67 -0.13 -1.55 16 14 C 0.10 0.82 6.14 -2.16 -0.01 0.81 16 15 N -0.59 -6.33 2.67 -174.28 -0.47 -6.80 16 16 C 0.50 5.98 6.83 -10.98 -0.08 5.91 16 17 O -0.50 -7.73 15.11 5.56 0.08 -7.64 16 18 C 0.03 0.32 3.53 -27.88 -0.10 0.22 16 19 H 0.15 0.76 5.46 -51.93 -0.28 0.48 16 20 F -0.15 -1.61 17.03 2.25 0.04 -1.57 16 21 C 0.45 4.45 2.86 37.16 0.11 4.56 16 22 F -0.15 -1.93 15.94 2.25 0.04 -1.89 16 23 F -0.17 -1.56 17.30 2.25 0.04 -1.52 16 24 F -0.17 -1.64 17.02 2.25 0.04 -1.60 16 25 C 0.11 1.28 5.69 -6.51 -0.04 1.24 16 26 C -0.13 -1.79 4.52 -28.26 -0.13 -1.92 16 27 C -0.11 -1.69 3.13 -89.55 -0.28 -1.97 16 28 H 0.07 1.04 7.78 -51.93 -0.40 0.63 16 29 C 0.18 4.00 4.98 -3.46 -0.02 3.98 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.01 0.28 7.96 -51.93 -0.41 -0.14 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.99 5.57 -51.92 -0.29 0.70 16 35 H 0.08 0.40 5.52 -51.93 -0.29 0.12 16 36 H 0.10 0.73 7.84 -51.93 -0.41 0.32 16 37 H 0.08 1.10 7.02 -51.93 -0.36 0.74 16 38 H 0.07 0.76 7.71 -51.93 -0.40 0.36 16 39 H 0.07 1.08 5.78 -51.93 -0.30 0.78 16 40 H 0.08 1.19 7.65 -51.93 -0.40 0.80 16 41 H 0.03 0.79 7.13 -51.93 -0.37 0.42 16 42 H 0.06 1.48 7.14 -51.93 -0.37 1.11 16 LS Contribution 340.41 15.07 5.13 5.13 Total: -1.00 -31.64 340.41 -6.39 -38.03 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -5.10 Total: -3.40 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: -1.18 Total: 5.58 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.45 Total: -47.69 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.08 Total: -7.64 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.15 Total: -6.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.64 -6.39 -38.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946597690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.770 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds