Wall clock time and date at job start Tue Mar 31 2020 20:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99944 * 2 1 4 4 H 1.48506 * 109.46824 * 269.99939 * 3 2 1 5 5 H 1.48497 * 109.47551 * 30.00128 * 3 2 1 6 6 H 1.48500 * 109.47069 * 150.00254 * 3 2 1 7 7 C 1.38811 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99938 * 172.92841 * 7 2 1 9 9 N 1.36940 * 120.00097 * 352.92592 * 7 2 1 10 10 C 1.47167 * 126.09644 * 168.74853 * 9 7 2 11 11 C 1.53756 * 105.64518 * 149.72776 * 10 9 7 12 12 H 1.08994 * 108.85388 * 271.00095 * 11 10 9 13 13 C 1.50964 * 111.20498 * 150.25045 * 11 10 9 14 14 C 1.53163 * 111.89947 * 178.56447 * 13 11 10 15 15 N 1.49721 * 105.59362 * 99.87955 * 14 13 11 16 16 C 1.34777 * 122.75323 * 111.57454 * 15 14 13 17 17 O 1.21280 * 119.99816 * 174.46935 * 16 15 14 18 18 C 1.50702 * 120.00372 * 354.47247 * 16 15 14 19 19 H 1.09005 * 109.46386 * 15.86397 * 18 16 15 20 20 F 1.39901 * 109.46923 * 255.86861 * 18 16 15 21 21 C 1.52998 * 109.47022 * 135.86249 * 18 16 15 22 22 F 1.39891 * 109.47184 * 60.00315 * 21 18 16 23 23 F 1.39904 * 109.46796 * 180.02562 * 21 18 16 24 24 F 1.39901 * 109.47367 * 300.00025 * 21 18 16 25 25 C 1.43644 * 114.48669 * 291.60650 * 15 14 13 26 26 C 1.51107 * 114.76332 * 57.96666 * 25 15 14 27 27 C 1.51858 * 112.30739 * 274.93655 * 26 25 15 28 28 H 1.09004 * 110.94533 * 322.61589 * 27 26 25 29 29 C 1.46769 * 126.09848 * 348.79437 * 9 7 2 30 30 H 0.97005 * 119.99681 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.21549 * 268.81627 * 10 9 7 32 32 H 1.08992 * 110.21758 * 30.65471 * 10 9 7 33 33 H 1.08999 * 108.98281 * 57.96595 * 13 11 10 34 34 H 1.09009 * 108.98113 * 299.16270 * 13 11 10 35 35 H 1.08992 * 110.21511 * 218.90170 * 14 13 11 36 36 H 1.09003 * 110.21398 * 340.72872 * 14 13 11 37 37 H 1.09000 * 108.42122 * 179.33723 * 25 15 14 38 38 H 1.09001 * 108.42853 * 296.59616 * 25 15 14 39 39 H 1.09003 * 108.91277 * 35.66045 * 26 25 15 40 40 H 1.08997 * 108.91387 * 154.29314 * 26 25 15 41 41 H 1.09000 * 109.78317 * 80.63232 * 29 9 7 42 42 H 1.09001 * 109.77721 * 319.85823 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2057 -0.1157 9 7 1.3333 -2.3836 0.1450 10 6 1.8862 -3.7312 -0.0652 11 6 1.1132 -4.6509 0.8944 12 1 1.6301 -4.6732 1.8537 13 6 1.0110 -6.0527 0.3435 14 6 0.2740 -6.9914 1.3035 15 7 -1.1235 -7.0909 0.7754 16 6 -1.6216 -8.2228 0.2395 17 8 -2.7899 -8.2788 -0.0812 18 6 -0.7270 -9.4188 0.0388 19 1 0.1834 -9.2939 0.6252 20 9 -0.3971 -9.5322 -1.3160 21 6 -1.4572 -10.6840 0.4936 22 9 -2.6255 -10.8441 -0.2589 23 9 -0.6264 -11.7942 0.3078 24 9 -1.7871 -10.5705 1.8484 25 6 -1.8894 -5.8808 0.8863 26 6 -1.2840 -4.6827 0.1925 27 6 -0.2691 -3.9639 1.0639 28 1 -0.5864 -3.9569 2.1067 29 6 -0.0731 -2.5318 0.5375 30 1 -0.4850 0.8401 0.0004 31 1 1.7298 -4.0457 -1.0971 32 1 2.9492 -3.7439 0.1749 33 1 2.0151 -6.4397 0.1703 34 1 0.4744 -6.0227 -0.6049 35 1 0.7463 -7.9736 1.3065 36 1 0.2696 -6.5731 2.3100 37 1 -2.8787 -6.0595 0.4650 38 1 -2.0075 -5.6433 1.9436 39 1 -0.7923 -5.0151 -0.7218 40 1 -2.0804 -3.9858 -0.0685 41 1 -0.7167 -2.3650 -0.3263 42 1 -0.3147 -1.8143 1.3217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946597690.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:10 Heat of formation + Delta-G solvation = -212.075399 kcal Electronic energy + Delta-G solvation = -31047.765659 eV Core-core repulsion = 26141.768459 eV Total energy + Delta-G solvation = -4905.997199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.46405 -49.56714 -48.84220 -48.70401 -41.64834 -40.01361 -37.44895 -34.93118 -33.83908 -32.65740 -32.03441 -29.18899 -28.84442 -26.43698 -25.51799 -24.15794 -23.60323 -22.12835 -21.14959 -20.19144 -19.84168 -19.70923 -19.38712 -18.88533 -18.60019 -17.71268 -17.05455 -16.85901 -16.41685 -16.19059 -15.81942 -15.67495 -15.59990 -15.49386 -15.33995 -15.23296 -14.98200 -14.95330 -14.92662 -14.60542 -14.43403 -14.01843 -13.95368 -13.76678 -13.31500 -13.13119 -12.98844 -12.75646 -12.66455 -12.40222 -12.30022 -12.08022 -11.88554 -11.74642 -11.39533 -11.26880 -11.04130 -10.96466 -10.66440 -9.90182 -8.84840 -7.87620 -5.22359 0.77590 1.03796 1.45916 1.46966 1.56155 1.57165 2.23918 2.49703 2.54363 2.65653 2.84727 3.26696 3.31643 3.62945 3.66718 3.74704 3.90846 3.93757 3.98070 4.16929 4.22394 4.47813 4.60818 4.65478 4.69041 4.77447 4.88792 4.94038 5.01286 5.09194 5.15692 5.25012 5.31504 5.39931 5.51613 5.59431 5.77939 5.80959 6.04693 6.23289 6.60221 7.10993 7.80147 8.47025 9.24324 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.033085 B = 0.002570 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.108907 B =10893.361489 C =11201.788747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.976 3.024 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.081 0.919 9 N -0.624 5.624 10 C 0.131 3.869 11 C -0.081 4.081 12 H 0.084 0.916 13 C -0.128 4.128 14 C 0.099 3.901 15 N -0.585 5.585 16 C 0.496 3.504 17 O -0.544 6.544 18 C 0.042 3.958 19 H 0.197 0.803 20 F -0.159 7.159 21 C 0.446 3.554 22 F -0.175 7.175 23 F -0.163 7.163 24 F -0.165 7.165 25 C 0.116 3.884 26 C -0.114 4.114 27 C -0.092 4.092 28 H 0.088 0.912 29 C 0.185 3.815 30 H 0.246 0.754 31 H 0.008 0.992 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.060 0.940 41 H -0.009 1.009 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -23.124 5.705 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.191 1.191 7 C -0.372 4.372 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.006 3.994 11 C -0.101 4.101 12 H 0.103 0.897 13 C -0.166 4.166 14 C -0.021 4.021 15 N -0.316 5.316 16 C 0.281 3.719 17 O -0.421 6.421 18 C 0.002 3.998 19 H 0.214 0.786 20 F -0.139 7.139 21 C 0.390 3.610 22 F -0.156 7.156 23 F -0.144 7.144 24 F -0.147 7.147 25 C -0.007 4.007 26 C -0.153 4.153 27 C -0.111 4.111 28 H 0.107 0.893 29 C 0.060 3.940 30 H 0.055 0.945 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.009 0.991 42 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.797 -22.974 5.489 23.634 hybrid contribution -0.097 1.446 -0.595 1.567 sum 0.700 -21.527 4.894 22.088 Atomic orbital electron populations 1.70173 1.06406 1.25321 1.57858 1.25682 0.96493 1.01152 1.02552 0.85126 0.77837 0.79243 0.77407 1.21483 1.22129 1.19136 1.19434 0.91247 0.83991 1.42515 0.90147 1.44679 1.09237 1.01385 1.79591 1.21557 0.96875 0.84830 0.96161 1.21729 0.94837 0.93951 0.99556 0.89735 1.21726 1.02576 0.93176 0.99113 1.23030 0.77783 1.02065 0.99176 1.48083 1.16702 1.09397 1.57432 1.20257 0.87892 0.84789 0.78997 1.90832 1.17883 1.82684 1.50695 1.23016 1.03018 0.90751 0.83021 0.78600 1.93020 1.93157 1.96201 1.31510 1.20469 0.78401 0.86001 0.76092 1.93275 1.50214 1.96030 1.76090 1.93268 1.71125 1.55132 1.94898 1.93253 1.92886 1.96024 1.32502 1.20479 0.94978 0.83063 1.02207 1.21386 0.98623 0.96015 0.99261 1.22114 0.95356 0.94280 0.99385 0.89332 1.20883 0.84847 0.92835 0.95453 0.94474 0.97428 0.93378 0.88084 0.91978 0.85722 0.86764 0.91038 0.89314 0.91997 0.92147 0.99085 0.96398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.00 10.67 21.65 0.23 -56.77 16 2 C -0.07 -3.70 5.43 84.86 0.46 -3.24 16 3 Si 0.98 45.27 29.56 68.60 2.03 47.29 16 4 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.24 -13.38 10.27 84.03 0.86 -12.51 16 8 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 9 N -0.62 -30.94 3.37 -696.54 -2.35 -33.29 16 10 C 0.13 4.85 6.71 86.51 0.58 5.43 16 11 C -0.08 -2.12 2.62 -10.42 -0.03 -2.15 16 12 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 13 C -0.13 -2.19 4.57 29.99 0.14 -2.06 16 14 C 0.10 1.08 6.14 85.81 0.53 1.60 16 15 N -0.58 -10.64 2.67 -823.69 -2.20 -12.84 16 16 C 0.50 10.61 6.83 87.66 0.60 11.21 16 17 O -0.54 -16.41 15.11 -3.03 -0.05 -16.46 16 18 C 0.04 0.62 3.53 29.85 0.11 0.73 16 19 H 0.20 0.81 5.46 -2.38 -0.01 0.80 16 20 F -0.16 -2.94 17.03 44.97 0.77 -2.18 16 21 C 0.45 7.75 2.86 71.98 0.21 7.96 16 22 F -0.17 -4.20 15.94 44.97 0.72 -3.48 16 23 F -0.16 -2.54 17.30 44.97 0.78 -1.76 16 24 F -0.17 -2.78 17.02 44.97 0.77 -2.01 16 25 C 0.12 2.57 5.69 86.29 0.49 3.06 16 26 C -0.11 -3.21 4.52 29.60 0.13 -3.08 16 27 C -0.09 -2.87 3.13 -10.10 -0.03 -2.90 16 28 H 0.09 2.46 7.78 -2.38 -0.02 2.44 16 29 C 0.19 8.70 4.98 86.61 0.43 9.13 16 30 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 31 H 0.01 0.30 7.96 -2.39 -0.02 0.28 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.36 5.57 -2.38 -0.01 1.34 16 35 H 0.12 0.31 5.52 -2.39 -0.01 0.29 16 36 H 0.11 0.98 7.84 -2.39 -0.02 0.96 16 37 H 0.07 1.83 7.02 -2.39 -0.02 1.81 16 38 H 0.09 1.67 7.71 -2.39 -0.02 1.65 16 39 H 0.06 1.86 5.78 -2.39 -0.01 1.85 16 40 H 0.06 1.91 7.65 -2.39 -0.02 1.90 16 41 H -0.01 -0.48 7.13 -2.39 -0.02 -0.49 16 42 H 0.02 0.95 7.14 -2.39 -0.02 0.94 16 Total: -1.00 -74.56 340.41 6.24 -68.32 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.07 Total: 0.00 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 4.48 Total: 13.19 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -4.32 Total: -102.91 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 9 Polarization: -12.46 SS G_CDS: 3.03 Total: -9.44 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -74.56 6.24 -68.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946597690.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.756 kcal (2) G-P(sol) polarization free energy of solvation -74.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds