Wall clock time and date at job start Tue Mar 31 2020 20:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99651 * 2 1 4 4 H 1.48496 * 109.47230 * 274.97456 * 3 2 1 5 5 H 1.48499 * 109.47377 * 34.97390 * 3 2 1 6 6 H 1.48507 * 109.47165 * 154.97434 * 3 2 1 7 7 C 1.38809 * 120.00453 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 169.83277 * 7 2 1 9 9 N 1.36941 * 119.99530 * 349.82614 * 7 2 1 10 10 C 1.46605 * 125.31252 * 168.59558 * 9 7 2 11 11 C 1.53396 * 108.10574 * 178.65237 * 10 9 7 12 12 H 1.08992 * 110.27087 * 225.14581 * 11 10 9 13 13 C 1.51159 * 110.93016 * 102.74535 * 11 10 9 14 14 C 1.51718 * 111.88664 * 156.74598 * 13 11 10 15 15 N 1.43510 * 114.25779 * 82.64359 * 14 13 11 16 16 C 1.34777 * 122.55436 * 122.92148 * 15 14 13 17 17 O 1.21280 * 119.99831 * 354.37861 * 16 15 14 18 18 C 1.50697 * 120.00165 * 174.10393 * 16 15 14 19 19 H 1.09000 * 109.47211 * 344.48152 * 18 16 15 20 20 F 1.39902 * 109.47009 * 104.48129 * 18 16 15 21 21 C 1.52998 * 109.47110 * 224.48417 * 18 16 15 22 22 F 1.39891 * 109.47654 * 59.99692 * 21 18 16 23 23 F 1.39895 * 109.47012 * 180.02562 * 21 18 16 24 24 F 1.39904 * 109.46793 * 299.99930 * 21 18 16 25 25 C 1.49551 * 114.89634 * 303.19091 * 15 14 13 26 26 C 1.52379 * 105.59287 * 69.98934 * 25 15 14 27 27 C 1.51853 * 111.91989 * 258.99566 * 26 25 15 28 28 H 1.09004 * 111.31486 * 297.45902 * 27 26 25 29 29 C 1.46654 * 125.32061 * 348.59554 * 9 7 2 30 30 H 0.97001 * 120.00623 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.74452 * 58.98781 * 10 9 7 32 32 H 1.08997 * 109.73633 * 298.32276 * 10 9 7 33 33 H 1.09005 * 108.99956 * 36.11918 * 13 11 10 34 34 H 1.09007 * 108.93311 * 277.32572 * 13 11 10 35 35 H 1.08994 * 108.52693 * 321.40450 * 14 13 11 36 36 H 1.09009 * 108.40185 * 203.78630 * 14 13 11 37 37 H 1.08998 * 110.26301 * 188.90071 * 25 15 14 38 38 H 1.09004 * 110.26276 * 310.99080 * 25 15 14 39 39 H 1.09005 * 108.99775 * 138.34179 * 26 25 15 40 40 H 1.08993 * 108.87117 * 19.56204 * 26 25 15 41 41 H 1.08993 * 109.96983 * 317.64940 * 29 9 7 42 42 H 1.09004 * 109.96684 * 78.87168 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5040 2.6201 0.8025 6 1 3.5963 1.4122 0.5923 7 6 2.0103 -1.2021 -0.0005 8 1 3.0776 -1.2093 -0.1656 9 7 1.3418 -2.3788 0.2084 10 6 1.8994 -3.7187 0.0011 11 6 0.8269 -4.7460 0.3847 12 1 1.2629 -5.5373 0.9945 13 6 0.1768 -5.3336 -0.8469 14 6 -0.4393 -6.6917 -0.5680 15 7 -1.7484 -6.6362 0.0175 16 6 -2.8205 -7.2272 -0.5460 17 8 -2.7225 -7.7475 -1.6372 18 6 -4.1397 -7.2470 0.1823 19 1 -3.9796 -6.9962 1.2309 20 9 -5.0048 -6.3109 -0.3943 21 6 -4.7575 -8.6430 0.0805 22 9 -3.8925 -9.5791 0.6570 23 9 -5.9824 -8.6611 0.7562 24 9 -4.9630 -8.9649 -1.2654 25 6 -1.8335 -5.8673 1.2974 26 6 -1.6337 -4.4067 0.9118 27 6 -0.2206 -3.9322 1.2015 28 1 0.0029 -3.9803 2.2673 29 6 -0.0438 -2.4955 0.6745 30 1 -0.4851 0.8400 0.0004 31 1 2.7794 -3.8527 0.6302 32 1 2.1730 -3.8455 -1.0464 33 1 0.9287 -5.4388 -1.6291 34 1 -0.6025 -4.6547 -1.1935 35 1 0.2190 -7.2386 0.1068 36 1 -0.5033 -7.2401 -1.5079 37 1 -2.8134 -6.0033 1.7550 38 1 -1.0479 -6.1863 1.9824 39 1 -2.3368 -3.7920 1.4738 40 1 -1.8352 -4.2925 -0.1532 41 1 -0.2286 -1.7798 1.4756 42 1 -0.7311 -2.3145 -0.1519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946597691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:15 Heat of formation + Delta-G solvation = -194.322586 kcal Electronic energy + Delta-G solvation = -31166.079724 eV Core-core repulsion = 26260.852344 eV Total energy + Delta-G solvation = -4905.227380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.67968 -48.76788 -48.06527 -47.87997 -40.67536 -38.78329 -36.17554 -33.33672 -32.66855 -31.56098 -30.57127 -27.77940 -27.58208 -25.12040 -24.16174 -23.05097 -22.65920 -20.38210 -20.16301 -19.39106 -19.04954 -18.57075 -18.42082 -17.82745 -17.01803 -16.77856 -16.13954 -15.51541 -15.09950 -15.00967 -14.87327 -14.78472 -14.61868 -14.45866 -14.36634 -14.15001 -14.12662 -14.01845 -13.76254 -13.39395 -13.12316 -13.05439 -12.75576 -12.32774 -12.00510 -11.77578 -11.53044 -11.37907 -11.34637 -10.92986 -10.82369 -10.75158 -10.34260 -10.12897 -10.05145 -9.82389 -9.77281 -9.62899 -8.97286 -8.58746 -6.80319 -5.78387 -3.11266 1.60567 1.91797 2.40153 3.00197 3.31860 3.36924 3.43001 3.43139 3.44873 3.54294 4.00521 4.38136 4.46982 4.62716 4.85333 4.93768 4.97458 5.15478 5.18653 5.41741 5.46272 5.51434 5.62435 5.70138 5.79944 5.96489 6.04418 6.12622 6.29433 6.32537 6.40217 6.51392 6.56846 6.71438 6.90054 6.95422 7.42784 7.50388 7.58837 7.75052 8.24679 9.18134 9.80017 10.45928 11.34347 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.002757 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.841957 B =10152.055163 C =10605.814762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.075 0.925 9 N -0.600 5.600 10 C 0.141 3.859 11 C -0.092 4.092 12 H 0.068 0.932 13 C -0.127 4.127 14 C 0.109 3.891 15 N -0.588 5.588 16 C 0.501 3.499 17 O -0.501 6.501 18 C 0.035 3.965 19 H 0.148 0.852 20 F -0.150 7.150 21 C 0.448 3.552 22 F -0.167 7.167 23 F -0.169 7.169 24 F -0.155 7.155 25 C 0.099 3.901 26 C -0.132 4.132 27 C -0.109 4.109 28 H 0.070 0.930 29 C 0.183 3.817 30 H 0.252 0.748 31 H 0.020 0.980 32 H 0.022 0.978 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.051 0.949 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -17.668 5.092 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.326 5.326 10 C 0.015 3.985 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.165 4.165 14 C -0.014 4.014 15 N -0.321 5.321 16 C 0.284 3.716 17 O -0.375 6.375 18 C -0.006 4.006 19 H 0.165 0.835 20 F -0.130 7.130 21 C 0.392 3.608 22 F -0.149 7.149 23 F -0.150 7.150 24 F -0.136 7.136 25 C -0.022 4.022 26 C -0.170 4.170 27 C -0.129 4.129 28 H 0.088 0.912 29 C 0.058 3.942 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.184 -17.752 4.436 20.045 hybrid contribution 0.229 0.946 0.023 0.974 sum -7.955 -16.806 4.459 19.121 Atomic orbital electron populations 1.69966 1.04971 1.25194 1.56197 1.24826 0.95594 0.97838 1.01953 0.86154 0.78798 0.83584 0.77537 1.21605 1.21611 1.20596 1.19002 0.91233 0.82883 1.42950 0.90702 1.44153 1.10976 0.99987 1.77473 1.21138 0.94087 0.85854 0.97435 1.21813 0.96393 0.97162 0.95707 0.91381 1.21487 1.01017 0.95396 0.98646 1.20794 0.81875 0.98766 0.99951 1.47963 1.08415 1.51306 1.24398 1.19799 0.84540 0.80830 0.86433 1.90840 1.83243 1.44635 1.18746 1.22862 0.89061 0.85558 1.03109 0.83463 1.93042 1.69353 1.64234 1.86415 1.20316 0.77168 0.87896 0.75420 1.93243 1.69488 1.67608 1.84545 1.93253 1.44784 1.96786 1.80161 1.93315 1.94740 1.93548 1.31983 1.22618 1.02588 0.92356 0.84657 1.21812 0.98385 0.93353 1.03420 1.22388 0.92312 0.99044 0.99147 0.91166 1.21039 0.86514 0.89219 0.97454 0.93738 0.96171 0.95995 0.90541 0.90352 0.91277 0.89560 0.90163 0.88772 0.90750 0.90119 0.93087 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.69 55.49 0.59 -25.70 16 2 C -0.01 -0.14 5.39 -17.43 -0.09 -0.24 16 3 Si 0.91 21.70 29.57 -169.99 -5.03 16.68 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.34 10.20 -15.06 -0.15 -6.50 16 8 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 9 N -0.60 -14.68 3.38 -172.15 -0.58 -15.26 16 10 C 0.14 2.75 6.82 -3.78 -0.03 2.72 16 11 C -0.09 -1.36 2.78 -89.86 -0.25 -1.61 16 12 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 13 C -0.13 -1.75 4.77 -28.31 -0.14 -1.88 16 14 C 0.11 1.25 5.75 -6.27 -0.04 1.21 16 15 N -0.59 -6.48 2.62 -174.63 -0.46 -6.94 16 16 C 0.50 6.17 6.82 -10.99 -0.07 6.10 16 17 O -0.50 -7.88 15.09 5.56 0.08 -7.79 16 18 C 0.03 0.34 3.41 -27.89 -0.10 0.24 16 19 H 0.15 0.84 5.64 -51.93 -0.29 0.54 16 20 F -0.15 -1.72 17.03 2.25 0.04 -1.68 16 21 C 0.45 4.61 2.86 37.16 0.11 4.72 16 22 F -0.17 -1.67 17.02 2.25 0.04 -1.64 16 23 F -0.17 -1.62 17.30 2.25 0.04 -1.58 16 24 F -0.15 -1.98 15.94 2.25 0.04 -1.94 16 25 C 0.10 0.88 6.03 -2.66 -0.02 0.87 16 26 C -0.13 -1.66 4.48 -27.63 -0.12 -1.78 16 27 C -0.11 -1.71 2.93 -89.18 -0.26 -1.97 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 C 0.18 4.08 4.84 -3.41 -0.02 4.07 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.02 0.44 7.40 -51.93 -0.38 0.06 16 33 H 0.08 1.04 7.53 -51.93 -0.39 0.65 16 34 H 0.08 1.27 5.86 -51.93 -0.30 0.96 16 35 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.09 1.07 7.00 -51.92 -0.36 0.71 16 37 H 0.08 0.48 5.56 -51.93 -0.29 0.20 16 38 H 0.09 0.72 7.80 -51.93 -0.41 0.32 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.19 5.47 -51.93 -0.28 0.91 16 41 H 0.05 1.29 7.35 -51.93 -0.38 0.90 16 42 H 0.03 0.85 7.31 -51.93 -0.38 0.47 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -31.82 339.90 -6.38 -38.20 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.09 Total: -3.41 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.18 Total: 5.95 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.45 Total: -47.90 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.08 Total: -7.79 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.15 Total: -6.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.82 -6.38 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946597691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.120 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds