Wall clock time and date at job start Tue Mar 31 2020 20:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99651 * 2 1 4 4 H 1.48496 * 109.47230 * 274.97456 * 3 2 1 5 5 H 1.48499 * 109.47377 * 34.97390 * 3 2 1 6 6 H 1.48507 * 109.47165 * 154.97434 * 3 2 1 7 7 C 1.38809 * 120.00453 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 169.83277 * 7 2 1 9 9 N 1.36941 * 119.99530 * 349.82614 * 7 2 1 10 10 C 1.46605 * 125.31252 * 168.59558 * 9 7 2 11 11 C 1.53396 * 108.10574 * 178.65237 * 10 9 7 12 12 H 1.08992 * 110.27087 * 225.14581 * 11 10 9 13 13 C 1.51159 * 110.93016 * 102.74535 * 11 10 9 14 14 C 1.51718 * 111.88664 * 156.74598 * 13 11 10 15 15 N 1.43510 * 114.25779 * 82.64359 * 14 13 11 16 16 C 1.34777 * 122.55436 * 122.92148 * 15 14 13 17 17 O 1.21280 * 119.99831 * 354.37861 * 16 15 14 18 18 C 1.50697 * 120.00165 * 174.10393 * 16 15 14 19 19 H 1.09000 * 109.47211 * 344.48152 * 18 16 15 20 20 F 1.39902 * 109.47009 * 104.48129 * 18 16 15 21 21 C 1.52998 * 109.47110 * 224.48417 * 18 16 15 22 22 F 1.39891 * 109.47654 * 59.99692 * 21 18 16 23 23 F 1.39895 * 109.47012 * 180.02562 * 21 18 16 24 24 F 1.39904 * 109.46793 * 299.99930 * 21 18 16 25 25 C 1.49551 * 114.89634 * 303.19091 * 15 14 13 26 26 C 1.52379 * 105.59287 * 69.98934 * 25 15 14 27 27 C 1.51853 * 111.91989 * 258.99566 * 26 25 15 28 28 H 1.09004 * 111.31486 * 297.45902 * 27 26 25 29 29 C 1.46654 * 125.32061 * 348.59554 * 9 7 2 30 30 H 0.97001 * 120.00623 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.74452 * 58.98781 * 10 9 7 32 32 H 1.08997 * 109.73633 * 298.32276 * 10 9 7 33 33 H 1.09005 * 108.99956 * 36.11918 * 13 11 10 34 34 H 1.09007 * 108.93311 * 277.32572 * 13 11 10 35 35 H 1.08994 * 108.52693 * 321.40450 * 14 13 11 36 36 H 1.09009 * 108.40185 * 203.78630 * 14 13 11 37 37 H 1.08998 * 110.26301 * 188.90071 * 25 15 14 38 38 H 1.09004 * 110.26276 * 310.99080 * 25 15 14 39 39 H 1.09005 * 108.99775 * 138.34179 * 26 25 15 40 40 H 1.08993 * 108.87117 * 19.56204 * 26 25 15 41 41 H 1.08993 * 109.96983 * 317.64940 * 29 9 7 42 42 H 1.09004 * 109.96684 * 78.87168 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5040 2.6201 0.8025 6 1 3.5963 1.4122 0.5923 7 6 2.0103 -1.2021 -0.0005 8 1 3.0776 -1.2093 -0.1656 9 7 1.3418 -2.3788 0.2084 10 6 1.8994 -3.7187 0.0011 11 6 0.8269 -4.7460 0.3847 12 1 1.2629 -5.5373 0.9945 13 6 0.1768 -5.3336 -0.8469 14 6 -0.4393 -6.6917 -0.5680 15 7 -1.7484 -6.6362 0.0175 16 6 -2.8205 -7.2272 -0.5460 17 8 -2.7225 -7.7475 -1.6372 18 6 -4.1397 -7.2470 0.1823 19 1 -3.9796 -6.9962 1.2309 20 9 -5.0048 -6.3109 -0.3943 21 6 -4.7575 -8.6430 0.0805 22 9 -3.8925 -9.5791 0.6570 23 9 -5.9824 -8.6611 0.7562 24 9 -4.9630 -8.9649 -1.2654 25 6 -1.8335 -5.8673 1.2974 26 6 -1.6337 -4.4067 0.9118 27 6 -0.2206 -3.9322 1.2015 28 1 0.0029 -3.9803 2.2673 29 6 -0.0438 -2.4955 0.6745 30 1 -0.4851 0.8400 0.0004 31 1 2.7794 -3.8527 0.6302 32 1 2.1730 -3.8455 -1.0464 33 1 0.9287 -5.4388 -1.6291 34 1 -0.6025 -4.6547 -1.1935 35 1 0.2190 -7.2386 0.1068 36 1 -0.5033 -7.2401 -1.5079 37 1 -2.8134 -6.0033 1.7550 38 1 -1.0479 -6.1863 1.9824 39 1 -2.3368 -3.7920 1.4738 40 1 -1.8352 -4.2925 -0.1532 41 1 -0.2286 -1.7798 1.4756 42 1 -0.7311 -2.3145 -0.1519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946597691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:14 Heat of formation + Delta-G solvation = -213.847209 kcal Electronic energy + Delta-G solvation = -31166.926375 eV Core-core repulsion = 26260.852344 eV Total energy + Delta-G solvation = -4906.074031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.47185 -49.57694 -48.84994 -48.70981 -41.67977 -40.02853 -37.45244 -34.95513 -33.72891 -32.88138 -31.89158 -29.13171 -28.99257 -26.39402 -25.53187 -24.22720 -23.65699 -21.98679 -21.16166 -20.20401 -19.84677 -19.72124 -19.35934 -18.89972 -18.65261 -17.69520 -17.11512 -16.81858 -16.48850 -16.13499 -15.79784 -15.69173 -15.61311 -15.56099 -15.30389 -15.23978 -14.98141 -14.95997 -14.92786 -14.59412 -14.55704 -14.01036 -13.90510 -13.62489 -13.48488 -13.18155 -12.85725 -12.69836 -12.69446 -12.50040 -12.35945 -12.08950 -11.85712 -11.77761 -11.38086 -11.33555 -11.05597 -11.01139 -10.64671 -9.89147 -8.80782 -7.88414 -5.22840 0.76637 1.05451 1.45024 1.45429 1.55498 1.57555 2.22876 2.49257 2.54195 2.65596 2.84628 3.26710 3.30030 3.61629 3.68263 3.71752 3.82259 3.94104 4.02784 4.17849 4.23555 4.44934 4.61466 4.66487 4.67326 4.75108 4.90643 4.96160 5.05153 5.10860 5.12515 5.21099 5.31783 5.36424 5.50490 5.61262 5.73765 5.84414 6.03233 6.23429 6.60710 7.12026 7.82303 8.44878 9.22584 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.002757 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.841957 B =10152.055163 C =10605.814762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.062 4.062 3 Si 0.973 3.027 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.247 4.247 8 H 0.076 0.924 9 N -0.624 5.624 10 C 0.131 3.869 11 C -0.077 4.077 12 H 0.112 0.888 13 C -0.119 4.119 14 C 0.114 3.886 15 N -0.584 5.584 16 C 0.496 3.504 17 O -0.544 6.544 18 C 0.039 3.961 19 H 0.197 0.803 20 F -0.161 7.161 21 C 0.448 3.552 22 F -0.164 7.164 23 F -0.163 7.163 24 F -0.174 7.174 25 C 0.103 3.897 26 C -0.127 4.127 27 C -0.093 4.093 28 H 0.091 0.909 29 C 0.191 3.809 30 H 0.247 0.753 31 H 0.029 0.971 32 H 0.013 0.987 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.011 0.989 42 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.800 -19.547 7.329 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.350 5.350 10 C 0.006 3.994 11 C -0.096 4.096 12 H 0.130 0.870 13 C -0.157 4.157 14 C -0.009 4.009 15 N -0.316 5.316 16 C 0.280 3.720 17 O -0.421 6.421 18 C -0.001 4.001 19 H 0.213 0.787 20 F -0.142 7.142 21 C 0.393 3.607 22 F -0.145 7.145 23 F -0.145 7.145 24 F -0.156 7.156 25 C -0.016 4.016 26 C -0.165 4.165 27 C -0.112 4.112 28 H 0.109 0.891 29 C 0.065 3.935 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -7.811 -19.651 6.695 22.181 hybrid contribution 0.182 1.570 -0.725 1.738 sum -7.630 -18.081 5.971 20.513 Atomic orbital electron populations 1.70177 1.06324 1.25340 1.57537 1.25635 0.96446 1.01040 1.02442 0.85147 0.77999 0.79458 0.77229 1.21639 1.21829 1.19274 1.19386 0.91671 0.84485 1.42090 0.90636 1.44522 1.11808 1.01161 1.77500 1.21403 0.95928 0.84930 0.97111 1.21792 0.94695 0.96698 0.96416 0.86998 1.21378 1.00063 0.96151 0.98120 1.20708 0.82677 0.96924 1.00585 1.48047 1.07933 1.50706 1.24888 1.20241 0.85478 0.80269 0.86023 1.90825 1.84024 1.46549 1.20675 1.23049 0.87169 0.84886 1.05013 0.78689 1.93023 1.69621 1.64633 1.86900 1.20402 0.77420 0.88285 0.74639 1.93249 1.69350 1.67582 1.84329 1.93265 1.44524 1.96785 1.79878 1.93277 1.94888 1.93761 1.33654 1.22814 1.06111 0.88796 0.83924 1.21719 0.96287 0.96562 1.01921 1.22265 0.94663 0.94345 0.99948 0.89087 1.20845 0.84888 0.92962 0.94763 0.94425 0.95306 0.96935 0.90826 0.93611 0.87878 0.90813 0.86288 0.85716 0.90137 0.92889 0.97013 0.98983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.63 10.69 21.65 0.23 -56.40 16 2 C -0.06 -3.52 5.39 84.86 0.46 -3.06 16 3 Si 0.97 45.58 29.57 68.60 2.03 47.61 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.25 -13.82 10.20 84.03 0.86 -12.96 16 8 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 9 N -0.62 -31.24 3.38 -698.55 -2.36 -33.60 16 10 C 0.13 5.04 6.82 86.49 0.59 5.63 16 11 C -0.08 -2.10 2.78 -10.30 -0.03 -2.13 16 12 H 0.11 2.18 7.68 -2.39 -0.02 2.17 16 13 C -0.12 -3.11 4.77 29.57 0.14 -2.97 16 14 C 0.11 2.29 5.75 86.51 0.50 2.79 16 15 N -0.58 -10.97 2.62 -824.78 -2.16 -13.13 16 16 C 0.50 11.14 6.82 87.66 0.60 11.74 16 17 O -0.54 -16.78 15.09 -3.03 -0.05 -16.83 16 18 C 0.04 0.64 3.41 29.85 0.10 0.74 16 19 H 0.20 1.18 5.64 -2.39 -0.01 1.17 16 20 F -0.16 -3.41 17.03 44.97 0.77 -2.64 16 21 C 0.45 8.27 2.86 71.98 0.21 8.48 16 22 F -0.16 -2.84 17.02 44.97 0.77 -2.07 16 23 F -0.16 -2.75 17.30 44.97 0.78 -1.97 16 24 F -0.17 -4.35 15.94 44.97 0.72 -3.63 16 25 C 0.10 1.34 6.03 85.58 0.52 1.86 16 26 C -0.13 -2.92 4.48 30.01 0.13 -2.78 16 27 C -0.09 -2.74 2.93 -9.86 -0.03 -2.77 16 28 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 29 C 0.19 8.80 4.84 86.70 0.42 9.22 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.01 0.51 7.40 -2.39 -0.02 0.49 16 33 H 0.07 1.96 7.53 -2.38 -0.02 1.94 16 34 H 0.05 1.51 5.86 -2.38 -0.01 1.49 16 35 H 0.10 1.46 7.68 -2.39 -0.02 1.44 16 36 H 0.07 1.72 7.00 -2.38 -0.02 1.71 16 37 H 0.12 0.68 5.56 -2.39 -0.01 0.66 16 38 H 0.12 1.02 7.80 -2.38 -0.02 1.00 16 39 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.05 1.56 5.47 -2.39 -0.01 1.55 16 41 H 0.01 0.61 7.35 -2.39 -0.02 0.59 16 42 H -0.01 -0.42 7.31 -2.38 -0.02 -0.44 16 Total: -1.00 -75.41 339.90 6.25 -69.16 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: 1.07 Total: -0.27 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 4.46 Total: 13.78 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -4.29 Total: -103.12 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.05 Total: -16.83 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 3.03 Total: -10.32 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.41 6.25 -69.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946597691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.687 kcal (2) G-P(sol) polarization free energy of solvation -75.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds