Wall clock time and date at job start Tue Mar 31 2020 20:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53757 * 112.06641 * 2 1 4 4 N 1.47200 * 106.40801 * 217.90313 * 3 2 1 5 5 C 1.36943 * 126.70374 * 211.29720 * 4 3 2 6 6 H 1.08003 * 119.99648 * 165.69720 * 5 4 3 7 7 C 1.38804 * 119.99839 * 345.69736 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70109 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70063 * 7 5 4 10 10 H 1.48493 * 109.47005 * 90.00021 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99959 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99813 * 9 7 5 13 13 C 1.47202 * 106.59609 * 31.56000 * 4 3 2 14 14 C 1.54041 * 106.25998 * 328.37451 * 13 4 3 15 15 C 1.53004 * 112.77295 * 141.67686 * 14 13 4 16 16 C 1.54318 * 109.25381 * 267.00913 * 14 13 4 17 17 N 1.48113 * 104.71098 * 88.38466 * 16 14 13 18 18 C 1.34770 * 127.84203 * 219.78381 * 17 16 14 19 19 O 1.21285 * 119.99735 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00234 * 359.97438 * 18 17 16 21 21 H 1.08996 * 109.47164 * 344.99416 * 20 18 17 22 22 F 1.39903 * 109.47303 * 105.00440 * 20 18 17 23 23 C 1.53008 * 109.47198 * 224.99831 * 20 18 17 24 24 F 1.39899 * 109.46798 * 59.99629 * 23 20 18 25 25 F 1.39898 * 109.47392 * 180.02562 * 23 20 18 26 26 F 1.39899 * 109.47111 * 300.00253 * 23 20 18 27 27 C 1.48114 * 104.30880 * 39.78183 * 17 16 14 28 28 H 1.09005 * 109.46800 * 58.98227 * 1 2 3 29 29 H 1.08993 * 109.47128 * 178.98308 * 1 2 3 30 30 H 1.08993 * 109.46692 * 298.98759 * 1 2 3 31 31 H 1.09005 * 110.07056 * 98.66767 * 3 2 1 32 32 H 1.09003 * 110.07169 * 337.14185 * 3 2 1 33 33 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 34 34 H 1.08994 * 110.07192 * 87.68326 * 13 4 3 35 35 H 1.08998 * 110.07099 * 209.21492 * 13 4 3 36 36 H 1.08996 * 109.46763 * 301.38419 * 15 14 13 37 37 H 1.09006 * 109.47073 * 61.37208 * 15 14 13 38 38 H 1.08992 * 109.47669 * 181.37803 * 15 14 13 39 39 H 1.09003 * 110.39078 * 329.57520 * 16 14 13 40 40 H 1.08999 * 110.48828 * 207.24219 * 16 14 13 41 41 H 1.08995 * 110.38501 * 201.41183 * 27 17 16 42 42 H 1.08996 * 110.48165 * 79.08361 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1077 1.4249 0.0000 4 7 3.2964 1.3917 -0.8675 5 6 4.4265 2.1542 -0.7370 6 1 5.3214 1.8908 -1.2812 7 6 4.4216 3.2655 0.0947 8 7 3.2905 3.6944 0.6134 9 14 6.0204 4.1525 0.4777 10 1 6.2496 5.2176 -0.5312 11 1 5.9373 4.7610 1.8298 12 1 7.1453 3.1837 0.4392 13 6 3.0307 0.3833 -1.9064 14 6 2.1378 -0.6868 -1.2505 15 6 1.0608 -1.2209 -2.1971 16 6 3.0265 -1.8157 -0.6874 17 7 3.3640 -1.3786 0.6870 18 6 4.5442 -1.4989 1.3264 19 8 4.6639 -1.0872 2.4610 20 6 5.7153 -2.1448 0.6318 21 1 5.3641 -2.6812 -0.2497 22 9 6.6294 -1.1591 0.2446 23 6 6.3975 -3.1258 1.5875 24 9 5.4833 -4.1114 1.9748 25 9 7.4849 -3.7250 0.9428 26 9 6.8482 -2.4374 2.7189 27 6 2.1100 -0.7794 1.1989 28 1 -0.3633 0.5296 -0.8808 29 1 -0.3633 -1.0274 -0.0182 30 1 -0.3632 0.4980 0.8989 31 1 2.3912 1.7137 1.0122 32 1 1.3739 2.1261 -0.3977 33 1 3.2870 4.4713 1.1942 34 1 2.5122 0.8416 -2.7485 35 1 3.9664 -0.0642 -2.2414 36 1 0.4331 -0.3965 -2.5352 37 1 1.5351 -1.6929 -3.0576 38 1 0.4472 -1.9535 -1.6730 39 1 3.9316 -1.9207 -1.2856 40 1 2.4775 -2.7570 -0.6624 41 1 2.3229 -0.1015 2.0254 42 1 1.4169 -1.5584 1.5165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982283650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:45 Heat of formation + Delta-G solvation = -191.964563 kcal Electronic energy + Delta-G solvation = -32702.664938 eV Core-core repulsion = 27797.539810 eV Total energy + Delta-G solvation = -4905.125128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.38920 -48.34769 -47.77733 -47.55511 -40.56780 -38.49657 -34.89659 -33.17233 -32.03121 -30.95902 -30.74310 -27.02417 -26.11537 -25.93804 -25.05194 -23.89675 -22.30843 -20.28760 -19.98348 -18.95803 -18.76336 -18.32031 -17.76925 -17.28068 -16.75431 -16.15851 -15.72294 -15.34930 -14.72321 -14.63142 -14.53763 -14.40394 -14.19722 -14.05767 -13.87180 -13.85095 -13.81973 -13.68341 -13.50696 -13.25960 -12.96031 -12.84016 -12.27122 -12.22219 -11.86141 -11.64196 -11.61074 -11.48428 -11.44789 -10.86763 -10.79258 -10.73982 -10.18606 -10.05507 -9.90284 -9.83825 -9.79611 -9.61438 -8.74510 -8.45009 -6.81338 -5.76914 -3.09939 2.01247 2.35363 2.84086 3.30266 3.41887 3.49278 3.52054 3.70475 3.77983 4.05202 4.34484 4.50382 4.59901 4.80767 4.83853 5.03766 5.31128 5.36564 5.43114 5.47540 5.52439 5.61632 5.76064 5.83703 5.88491 6.00678 6.02243 6.15879 6.22616 6.24386 6.34585 6.46675 6.56118 6.74077 6.80013 7.33584 7.53549 7.54718 7.75263 7.99762 8.24913 9.16636 9.79247 10.49062 11.36981 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.006261 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.142824 B = 4471.294081 C = 6185.908586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.098 4.098 3 C 0.180 3.820 4 N -0.589 5.589 5 C -0.227 4.227 6 H 0.073 0.927 7 C 0.000 4.000 8 N -0.914 5.914 9 Si 0.905 3.095 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.144 3.856 14 C -0.086 4.086 15 C -0.124 4.124 16 C 0.107 3.893 17 N -0.590 5.590 18 C 0.523 3.477 19 O -0.500 6.500 20 C 0.043 3.957 21 H 0.138 0.862 22 F -0.145 7.145 23 C 0.446 3.554 24 F -0.170 7.170 25 F -0.171 7.171 26 F -0.154 7.154 27 C 0.125 3.875 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.024 0.976 33 H 0.253 0.747 34 H 0.021 0.979 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.273 -16.305 -3.395 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 C 0.054 3.946 4 N -0.312 5.312 5 C -0.355 4.355 6 H 0.091 0.909 7 C -0.197 4.197 8 N -0.560 5.560 9 Si 0.735 3.265 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.204 1.204 13 C 0.017 3.983 14 C -0.088 4.088 15 C -0.181 4.181 16 C -0.016 4.016 17 N -0.322 5.322 18 C 0.306 3.694 19 O -0.374 6.374 20 C 0.002 3.998 21 H 0.156 0.844 22 F -0.125 7.125 23 C 0.391 3.609 24 F -0.151 7.151 25 F -0.152 7.152 26 F -0.135 7.135 27 C 0.004 3.996 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.947 -15.864 -2.562 16.337 hybrid contribution 1.113 0.507 0.159 1.233 sum -1.834 -15.357 -2.404 15.651 Atomic orbital electron populations 1.21587 0.93240 1.00858 1.02218 1.22601 0.95016 0.99797 0.92633 1.21227 0.87942 0.87901 0.97528 1.44314 1.16492 1.43056 1.27337 1.18883 0.88073 1.03960 1.24606 0.90924 1.24802 0.96925 0.97073 1.00921 1.69906 1.23809 1.26086 1.36241 0.86226 0.83159 0.79570 0.77540 1.21543 1.21529 1.20413 1.21396 0.95256 0.89691 0.91910 1.22380 0.95442 0.95077 0.95884 1.21624 0.97521 1.00850 0.98146 1.22663 0.99254 0.97347 0.82299 1.48480 1.09988 1.57958 1.15742 1.19285 0.82242 0.81289 0.86565 1.90829 1.81587 1.47477 1.17466 1.22686 0.88888 0.88817 0.99404 0.84429 1.93077 1.65996 1.62054 1.91370 1.20410 0.77807 0.81024 0.81672 1.93221 1.66460 1.63707 1.91753 1.93233 1.56063 1.84651 1.81290 1.93314 1.89265 1.78663 1.52234 1.22492 0.82930 0.96435 0.97756 0.91987 0.93007 0.92434 0.90550 0.95788 0.93679 0.96175 0.94281 0.91745 0.92758 0.92500 0.90703 0.90700 0.89454 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 7.54 37.16 0.28 -1.28 16 2 C -0.10 -1.59 1.08 -152.33 -0.16 -1.76 16 3 C 0.18 4.05 4.68 -3.27 -0.02 4.04 16 4 N -0.59 -14.19 3.38 -171.00 -0.58 -14.77 16 5 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 6 H 0.07 1.98 7.85 -52.48 -0.41 1.57 16 7 C 0.00 0.00 5.38 -17.43 -0.09 -0.09 16 8 N -0.91 -26.85 10.87 55.49 0.60 -26.25 16 9 Si 0.91 22.93 29.56 -169.99 -5.03 17.90 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 13 C 0.14 2.71 6.34 -3.11 -0.02 2.69 16 14 C -0.09 -1.23 1.08 -152.18 -0.16 -1.40 16 15 C -0.12 -1.32 7.59 37.16 0.28 -1.04 16 16 C 0.11 1.37 5.72 -2.46 -0.01 1.36 16 17 N -0.59 -9.68 3.31 -169.46 -0.56 -10.24 16 18 C 0.52 9.57 6.99 -10.99 -0.08 9.50 16 19 O -0.50 -11.05 15.87 5.55 0.09 -10.96 16 20 C 0.04 0.65 3.50 -27.88 -0.10 0.55 16 21 H 0.14 1.45 6.35 -51.93 -0.33 1.12 16 22 F -0.14 -2.59 17.03 2.25 0.04 -2.55 16 23 C 0.45 6.40 2.86 37.16 0.11 6.51 16 24 F -0.17 -2.26 17.02 2.25 0.04 -2.22 16 25 F -0.17 -2.22 17.30 2.25 0.04 -2.19 16 26 F -0.15 -2.63 15.95 2.25 0.04 -2.59 16 27 C 0.13 2.05 6.05 -2.47 -0.01 2.03 16 28 H 0.06 0.80 7.20 -51.93 -0.37 0.42 16 29 H 0.05 0.54 7.21 -51.93 -0.37 0.16 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 2.02 6.03 -51.93 -0.31 1.71 16 32 H 0.02 0.59 7.89 -51.93 -0.41 0.18 16 33 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.02 0.39 7.93 -51.93 -0.41 -0.02 16 35 H 0.04 0.72 7.40 -51.93 -0.38 0.33 16 36 H 0.06 0.73 7.18 -51.93 -0.37 0.35 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.51 7.21 -51.93 -0.37 0.14 16 39 H 0.07 0.88 6.01 -51.93 -0.31 0.56 16 40 H 0.07 0.72 7.96 -51.93 -0.41 0.31 16 41 H 0.09 1.70 7.16 -51.93 -0.37 1.33 16 42 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -32.92 346.67 -5.49 -38.41 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -5.25 Total: -4.46 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -0.15 Total: 14.70 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.54 Total: -51.26 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 9 Polarization: -9.70 SS G_CDS: 0.15 Total: -9.55 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.90 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.92 -5.49 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982283650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.554 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds