Wall clock time and date at job start Tue Mar 31 2020 20:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53757 * 112.06641 * 2 1 4 4 N 1.47200 * 106.40801 * 217.90313 * 3 2 1 5 5 C 1.36943 * 126.70374 * 211.29720 * 4 3 2 6 6 H 1.08003 * 119.99648 * 165.69720 * 5 4 3 7 7 C 1.38804 * 119.99839 * 345.69736 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70109 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70063 * 7 5 4 10 10 H 1.48493 * 109.47005 * 90.00021 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99959 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99813 * 9 7 5 13 13 C 1.47202 * 106.59609 * 31.56000 * 4 3 2 14 14 C 1.54041 * 106.25998 * 328.37451 * 13 4 3 15 15 C 1.53004 * 112.77295 * 141.67686 * 14 13 4 16 16 C 1.54318 * 109.25381 * 267.00913 * 14 13 4 17 17 N 1.48113 * 104.71098 * 88.38466 * 16 14 13 18 18 C 1.34770 * 127.84203 * 219.78381 * 17 16 14 19 19 O 1.21285 * 119.99735 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.00234 * 359.97438 * 18 17 16 21 21 H 1.08996 * 109.47164 * 344.99416 * 20 18 17 22 22 F 1.39903 * 109.47303 * 105.00440 * 20 18 17 23 23 C 1.53008 * 109.47198 * 224.99831 * 20 18 17 24 24 F 1.39899 * 109.46798 * 59.99629 * 23 20 18 25 25 F 1.39898 * 109.47392 * 180.02562 * 23 20 18 26 26 F 1.39899 * 109.47111 * 300.00253 * 23 20 18 27 27 C 1.48114 * 104.30880 * 39.78183 * 17 16 14 28 28 H 1.09005 * 109.46800 * 58.98227 * 1 2 3 29 29 H 1.08993 * 109.47128 * 178.98308 * 1 2 3 30 30 H 1.08993 * 109.46692 * 298.98759 * 1 2 3 31 31 H 1.09005 * 110.07056 * 98.66767 * 3 2 1 32 32 H 1.09003 * 110.07169 * 337.14185 * 3 2 1 33 33 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 34 34 H 1.08994 * 110.07192 * 87.68326 * 13 4 3 35 35 H 1.08998 * 110.07099 * 209.21492 * 13 4 3 36 36 H 1.08996 * 109.46763 * 301.38419 * 15 14 13 37 37 H 1.09006 * 109.47073 * 61.37208 * 15 14 13 38 38 H 1.08992 * 109.47669 * 181.37803 * 15 14 13 39 39 H 1.09003 * 110.39078 * 329.57520 * 16 14 13 40 40 H 1.08999 * 110.48828 * 207.24219 * 16 14 13 41 41 H 1.08995 * 110.38501 * 201.41183 * 27 17 16 42 42 H 1.08996 * 110.48165 * 79.08361 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1077 1.4249 0.0000 4 7 3.2964 1.3917 -0.8675 5 6 4.4265 2.1542 -0.7370 6 1 5.3214 1.8908 -1.2812 7 6 4.4216 3.2655 0.0947 8 7 3.2905 3.6944 0.6134 9 14 6.0204 4.1525 0.4777 10 1 6.2496 5.2176 -0.5312 11 1 5.9373 4.7610 1.8298 12 1 7.1453 3.1837 0.4392 13 6 3.0307 0.3833 -1.9064 14 6 2.1378 -0.6868 -1.2505 15 6 1.0608 -1.2209 -2.1971 16 6 3.0265 -1.8157 -0.6874 17 7 3.3640 -1.3786 0.6870 18 6 4.5442 -1.4989 1.3264 19 8 4.6639 -1.0872 2.4610 20 6 5.7153 -2.1448 0.6318 21 1 5.3641 -2.6812 -0.2497 22 9 6.6294 -1.1591 0.2446 23 6 6.3975 -3.1258 1.5875 24 9 5.4833 -4.1114 1.9748 25 9 7.4849 -3.7250 0.9428 26 9 6.8482 -2.4374 2.7189 27 6 2.1100 -0.7794 1.1989 28 1 -0.3633 0.5296 -0.8808 29 1 -0.3633 -1.0274 -0.0182 30 1 -0.3632 0.4980 0.8989 31 1 2.3912 1.7137 1.0122 32 1 1.3739 2.1261 -0.3977 33 1 3.2870 4.4713 1.1942 34 1 2.5122 0.8416 -2.7485 35 1 3.9664 -0.0642 -2.2414 36 1 0.4331 -0.3965 -2.5352 37 1 1.5351 -1.6929 -3.0576 38 1 0.4472 -1.9535 -1.6730 39 1 3.9316 -1.9207 -1.2856 40 1 2.4775 -2.7570 -0.6624 41 1 2.3229 -0.1015 2.0254 42 1 1.4169 -1.5584 1.5165 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982283650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:44 Heat of formation + Delta-G solvation = -213.767716 kcal Electronic energy + Delta-G solvation = -32703.610394 eV Core-core repulsion = 27797.539810 eV Total energy + Delta-G solvation = -4906.070584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.52236 -49.58976 -48.89983 -48.75095 -41.88857 -39.93120 -36.55137 -34.75650 -33.34585 -32.52890 -32.14506 -28.31214 -27.83235 -27.01294 -26.53792 -25.13571 -23.92994 -21.78733 -21.26239 -20.13174 -19.91773 -19.56064 -19.14658 -18.77901 -18.31739 -17.50295 -17.07579 -16.74869 -16.55994 -15.76409 -15.73848 -15.65243 -15.61820 -15.29970 -15.23746 -15.10628 -15.01694 -14.98126 -14.88469 -14.50645 -14.37732 -14.12679 -13.75877 -13.58619 -13.33993 -13.00417 -12.88755 -12.81285 -12.74258 -12.54346 -12.44168 -12.13040 -11.95713 -11.80080 -11.50158 -11.22246 -11.16268 -11.10036 -10.72617 -9.86009 -8.81468 -7.93691 -5.24870 0.81859 1.02998 1.34501 1.39051 1.45678 1.61466 2.16703 2.43193 2.59388 2.63603 2.93651 3.23442 3.26740 3.43731 3.61912 3.63327 3.73119 3.89295 4.15229 4.35192 4.41925 4.49443 4.60093 4.69632 4.78869 4.81704 4.91046 4.99986 5.07029 5.11439 5.24956 5.29686 5.36808 5.44186 5.47763 5.53195 5.66188 5.80600 6.20723 6.26381 6.66872 7.06025 7.75748 8.45067 9.18881 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.006261 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.142824 B = 4471.294081 C = 6185.908586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.088 4.088 3 C 0.188 3.812 4 N -0.611 5.611 5 C -0.225 4.225 6 H 0.072 0.928 7 C -0.060 4.060 8 N -0.943 5.943 9 Si 0.956 3.044 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.277 1.277 13 C 0.135 3.865 14 C -0.072 4.072 15 C -0.117 4.117 16 C 0.101 3.899 17 N -0.591 5.591 18 C 0.508 3.492 19 O -0.556 6.556 20 C 0.044 3.956 21 H 0.191 0.809 22 F -0.165 7.165 23 C 0.452 3.548 24 F -0.160 7.160 25 F -0.160 7.160 26 F -0.176 7.176 27 C 0.124 3.876 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.024 0.976 32 H -0.009 1.009 33 H 0.245 0.755 34 H 0.018 0.982 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.039 0.961 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.373 -20.057 -5.648 21.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C 0.062 3.938 4 N -0.335 5.335 5 C -0.354 4.354 6 H 0.090 0.910 7 C -0.253 4.253 8 N -0.591 5.591 9 Si 0.785 3.215 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.203 1.203 13 C 0.010 3.990 14 C -0.074 4.074 15 C -0.175 4.175 16 C -0.020 4.020 17 N -0.322 5.322 18 C 0.293 3.707 19 O -0.434 6.434 20 C 0.004 3.996 21 H 0.208 0.792 22 F -0.145 7.145 23 C 0.397 3.603 24 F -0.142 7.142 25 F -0.141 7.141 26 F -0.157 7.157 27 C 0.002 3.998 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.009 0.991 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.148 0.852 41 H 0.058 0.942 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.067 -19.657 -4.889 20.660 hybrid contribution 1.427 1.683 0.792 2.344 sum -2.640 -17.973 -4.097 18.623 Atomic orbital electron populations 1.21586 0.90191 1.03550 1.01922 1.22475 0.97175 0.95261 0.94080 1.20997 0.86973 0.91744 0.94083 1.44559 1.15854 1.43624 1.29444 1.19166 0.89362 1.03695 1.23223 0.91014 1.25484 0.99257 0.98595 1.02007 1.70092 1.25262 1.26436 1.37330 0.85413 0.80388 0.78787 0.76918 1.20431 1.22533 1.20254 1.21704 0.96740 0.89666 0.90898 1.22356 0.95861 0.94109 0.95108 1.21638 0.96349 1.01321 0.98152 1.23093 1.00417 0.98498 0.80001 1.48702 1.09396 1.56845 1.17237 1.19907 0.83392 0.81112 0.86321 1.90798 1.82630 1.49964 1.19995 1.22934 0.87232 0.88336 1.01083 0.79171 1.93028 1.66700 1.63265 1.91552 1.20285 0.78062 0.81048 0.80942 1.93238 1.66118 1.63161 1.91655 1.93256 1.55586 1.84364 1.80942 1.93274 1.89565 1.79314 1.53534 1.22526 0.83950 0.96979 0.96324 0.91959 0.88587 0.93317 0.95798 0.99147 0.94632 0.96414 0.93544 0.92547 0.90482 0.89212 0.89051 0.85239 0.94195 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 7.54 71.98 0.54 -2.08 16 2 C -0.09 -2.71 1.08 -50.77 -0.05 -2.76 16 3 C 0.19 8.85 4.68 86.50 0.41 9.25 16 4 N -0.61 -30.09 3.38 -694.94 -2.35 -32.44 16 5 C -0.22 -12.78 10.28 84.03 0.86 -11.91 16 6 H 0.07 3.99 7.85 -2.91 -0.02 3.96 16 7 C -0.06 -3.55 5.38 84.86 0.46 -3.09 16 8 N -0.94 -58.79 10.87 21.65 0.24 -58.56 16 9 Si 0.96 49.01 29.56 68.60 2.03 51.04 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 12 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 13 C 0.14 4.86 6.34 86.60 0.55 5.41 16 14 C -0.07 -1.80 1.08 -50.67 -0.05 -1.85 16 15 C -0.12 -1.79 7.59 71.98 0.55 -1.24 16 16 C 0.10 2.03 5.72 86.52 0.49 2.53 16 17 N -0.59 -18.05 3.31 -808.44 -2.68 -20.73 16 18 C 0.51 18.22 6.99 87.66 0.61 18.83 16 19 O -0.56 -25.44 15.87 -3.05 -0.05 -25.48 16 20 C 0.04 1.24 3.50 29.85 0.10 1.34 16 21 H 0.19 3.12 6.35 -2.39 -0.02 3.10 16 22 F -0.17 -5.78 17.03 44.97 0.77 -5.02 16 23 C 0.45 12.22 2.86 71.98 0.21 12.43 16 24 F -0.16 -3.87 17.02 44.97 0.77 -3.10 16 25 F -0.16 -3.81 17.30 44.97 0.78 -3.03 16 26 F -0.18 -6.05 15.95 44.97 0.72 -5.33 16 27 C 0.12 3.88 6.05 86.51 0.52 4.40 16 28 H 0.06 1.44 7.20 -2.38 -0.02 1.42 16 29 H 0.10 1.40 7.21 -2.39 -0.02 1.38 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.02 1.35 6.03 -2.38 -0.01 1.34 16 32 H -0.01 -0.49 7.89 -2.39 -0.02 -0.51 16 33 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.02 0.66 7.93 -2.39 -0.02 0.64 16 35 H 0.05 1.59 7.40 -2.39 -0.02 1.57 16 36 H 0.06 1.00 7.18 -2.39 -0.02 0.98 16 37 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.09 0.87 7.21 -2.39 -0.02 0.85 16 39 H 0.09 1.60 6.01 -2.39 -0.01 1.58 16 40 H 0.13 1.40 7.96 -2.39 -0.02 1.38 16 41 H 0.04 1.63 7.16 -2.39 -0.02 1.61 16 42 H 0.11 2.51 7.97 -2.39 -0.02 2.49 16 Total: -1.00 -80.82 346.67 6.47 -74.35 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: 1.07 Total: -2.96 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 5.20 Total: 31.26 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.79 Total: -111.73 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.48 kcal Atomic # 9 Polarization: -19.51 SS G_CDS: 3.03 Total: -16.48 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 2.03 Total: 51.04 kcal Total: -80.82 6.47 -74.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982283650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.418 kcal (2) G-P(sol) polarization free energy of solvation -80.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds