Wall clock time and date at job start Tue Mar 31 2020 20:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99730 * 2 1 4 4 H 1.48502 * 109.47124 * 240.00329 * 3 2 1 5 5 H 1.48492 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47015 * 120.00554 * 3 2 1 7 7 C 1.38810 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00019 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99835 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.52435 * 34.93039 * 10 9 7 12 12 C 1.53186 * 109.51290 * 274.85234 * 10 9 7 13 13 N 1.46928 * 108.76475 * 294.69441 * 12 10 9 14 14 C 1.34774 * 120.62901 * 126.36344 * 13 12 10 15 15 O 1.21285 * 120.00041 * 355.20470 * 14 13 12 16 16 C 1.50703 * 120.00362 * 175.20836 * 14 13 12 17 17 C 1.53001 * 115.54722 * 281.20071 * 16 14 13 18 18 F 1.39894 * 109.46959 * 300.77399 * 17 16 14 19 19 C 1.52991 * 117.50266 * 135.48934 * 16 14 13 20 20 C 1.52990 * 60.00077 * 252.51275 * 19 16 14 21 21 C 1.46927 * 118.74326 * 306.38702 * 13 12 10 22 22 C 1.53190 * 108.77360 * 53.60345 * 21 13 12 23 23 C 1.53043 * 109.49586 * 155.00448 * 10 9 7 24 24 H 1.08999 * 109.46239 * 178.59959 * 23 10 9 25 25 C 1.53000 * 109.46109 * 298.57004 * 23 10 9 26 26 F 1.39905 * 109.47180 * 180.02562 * 25 23 10 27 27 F 1.39901 * 109.47106 * 300.02420 * 25 23 10 28 28 F 1.39899 * 109.47305 * 60.02657 * 25 23 10 29 29 H 0.96998 * 120.00396 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00064 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.59925 * 174.91530 * 12 10 9 32 32 H 1.08997 * 109.59205 * 54.48091 * 12 10 9 33 33 H 1.09004 * 109.47348 * 60.77055 * 17 16 14 34 34 H 1.08996 * 109.46922 * 180.77100 * 17 16 14 35 35 H 1.09007 * 117.50041 * 0.02562 * 19 16 14 36 36 H 1.09004 * 117.50224 * 145.01937 * 19 16 14 37 37 H 1.09000 * 117.49934 * 252.50488 * 20 19 16 38 38 H 1.09008 * 117.50304 * 107.49491 * 20 19 16 39 39 H 1.08998 * 109.58543 * 293.82335 * 21 13 12 40 40 H 1.08994 * 109.58778 * 173.39520 * 21 13 12 41 41 H 1.09004 * 109.49605 * 185.41683 * 22 21 13 42 42 H 1.08998 * 109.49581 * 65.31822 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9701 -3.5513 0.5859 12 6 2.4186 -4.0381 -1.4408 13 7 1.1792 -4.3028 -2.1842 14 6 0.9253 -3.6661 -3.3447 15 8 1.6802 -2.8034 -3.7408 16 6 -0.2966 -4.0260 -4.1500 17 6 -0.1824 -5.3011 -4.9881 18 9 0.8779 -5.1719 -5.8914 19 6 -1.1301 -2.8772 -4.7209 20 6 -1.6631 -3.6982 -3.5452 21 6 0.2217 -5.2743 -1.6384 22 6 -0.1139 -4.8792 -0.1968 23 6 1.1816 -4.7531 0.6081 24 1 1.7177 -5.7019 0.5843 25 6 0.8484 -4.3923 2.0571 26 9 0.0476 -5.3948 2.6150 27 9 2.0325 -4.2777 2.7933 28 9 0.1602 -3.1747 2.0881 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0405 -4.9333 -1.4370 32 1 2.9592 -3.2172 -1.9120 33 1 0.0009 -6.1520 -4.3319 34 1 -1.1105 -5.4591 -5.5373 35 1 -0.7945 -1.8608 -4.5144 36 1 -1.5973 -3.0293 -5.6940 37 1 -2.4810 -4.3906 -3.7446 38 1 -1.6785 -3.2221 -2.5647 39 1 0.6645 -6.2702 -1.6505 40 1 -0.6873 -5.2689 -2.2398 41 1 -0.7480 -5.6439 0.2518 42 1 -0.6382 -3.9236 -0.1942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998297720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:10 Heat of formation + Delta-G solvation = -190.595797 kcal Electronic energy + Delta-G solvation = -32452.923663 eV Core-core repulsion = 27547.857889 eV Total energy + Delta-G solvation = -4905.065774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.56298 -47.63140 -47.14372 -46.87279 -40.20392 -37.93420 -36.37337 -34.18356 -32.72925 -31.20885 -28.83461 -28.00873 -26.90387 -24.27408 -23.50555 -22.86373 -22.45764 -21.98814 -19.66671 -18.63615 -17.84974 -17.73540 -17.42428 -17.00614 -16.64532 -16.01256 -15.92674 -15.51836 -15.23888 -14.72825 -14.52602 -14.30229 -14.06048 -13.95160 -13.67342 -13.53224 -13.41196 -13.20043 -13.09132 -13.05142 -12.91526 -12.67285 -12.40481 -12.23636 -11.76508 -11.64269 -11.52505 -11.44211 -11.08328 -10.87707 -10.83540 -10.72548 -10.44811 -10.36405 -10.23923 -10.03793 -9.66924 -9.29400 -9.01620 -8.26526 -6.95910 -5.74401 -3.03491 2.95777 3.16944 3.26793 3.48750 3.52342 3.54199 3.57818 4.22276 4.27184 4.32248 4.50795 4.55214 4.63462 4.65777 4.75733 4.88253 4.94830 5.13364 5.15489 5.25829 5.36972 5.38191 5.47556 5.49605 5.57701 5.59450 5.65423 5.74973 5.83949 5.95694 5.99087 6.04743 6.19648 6.25886 6.44116 6.56189 6.93810 7.71691 7.77075 8.41500 8.63025 9.55376 10.04168 10.39637 11.47630 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.006033 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.856841 B = 4639.716094 C = 6485.408380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.003 4.003 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.708 5.708 10 C 0.164 3.836 11 H 0.072 0.928 12 C 0.096 3.904 13 N -0.595 5.595 14 C 0.558 3.442 15 O -0.515 6.515 16 C -0.202 4.202 17 C 0.112 3.888 18 F -0.209 7.209 19 C -0.134 4.134 20 C -0.153 4.153 21 C 0.113 3.887 22 C -0.134 4.134 23 C -0.139 4.139 24 H 0.107 0.893 25 C 0.456 3.544 26 F -0.199 7.199 27 F -0.188 7.188 28 F -0.154 7.154 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 -16.357 -3.943 17.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.351 5.351 10 C 0.052 3.948 11 H 0.090 0.910 12 C -0.030 4.030 13 N -0.328 5.328 14 C 0.344 3.656 15 O -0.389 6.389 16 C -0.206 4.206 17 C 0.056 3.944 18 F -0.190 7.190 19 C -0.172 4.172 20 C -0.190 4.190 21 C -0.011 4.011 22 C -0.173 4.173 23 C -0.159 4.159 24 H 0.125 0.875 25 C 0.402 3.598 26 F -0.181 7.181 27 F -0.169 7.169 28 F -0.135 7.135 29 H 0.064 0.936 30 H 0.224 0.776 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.787 -15.686 -4.131 16.658 hybrid contribution 0.132 0.937 0.351 1.009 sum -3.655 -14.750 -3.781 15.659 Atomic orbital electron populations 1.69631 1.05042 1.25647 1.57203 1.24645 0.95429 0.97487 1.02364 0.86315 0.78647 0.83687 0.77817 1.21204 1.21796 1.21322 1.19071 0.90862 0.83808 1.43308 0.91291 1.42420 1.05835 0.98846 1.87981 1.20585 0.94619 0.86131 0.93486 0.91002 1.22478 0.85266 1.00785 0.94435 1.47740 1.21123 1.42125 1.21845 1.19048 0.85095 0.80906 0.80577 1.90717 1.48629 1.30044 1.69538 1.22053 0.93722 1.00138 1.04653 1.21350 0.88306 0.95327 0.89380 1.92809 1.59612 1.97136 1.69397 1.23018 0.99676 0.96635 0.97824 1.23150 0.92854 1.03002 0.99965 1.21663 0.93648 0.91838 0.93910 1.21955 0.95861 1.04261 0.95178 1.22753 1.00669 1.02985 0.89521 0.87462 1.20464 0.74385 0.75192 0.89804 1.93116 1.75097 1.61992 1.87881 1.93139 1.47790 1.95978 1.79999 1.93317 1.79461 1.44059 1.96710 0.93606 0.77556 0.92870 0.88102 0.90265 0.89950 0.87275 0.87951 0.87713 0.86958 0.91566 0.89080 0.90024 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.56 13.06 55.49 0.72 -26.83 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 3 Si 0.90 23.00 29.55 -169.99 -5.02 17.98 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -16.54 3.68 -53.31 -0.20 -16.74 16 10 C 0.16 2.97 2.45 -67.81 -0.17 2.80 16 11 H 0.07 1.34 7.70 -51.93 -0.40 0.94 16 12 C 0.10 1.63 6.05 -3.71 -0.02 1.61 16 13 N -0.60 -9.41 2.89 -172.77 -0.50 -9.91 16 14 C 0.56 10.13 6.77 -10.98 -0.07 10.06 16 15 O -0.52 -12.06 16.40 5.55 0.09 -11.97 16 16 C -0.20 -2.73 1.12 -155.67 -0.17 -2.90 16 17 C 0.11 1.18 7.31 37.16 0.27 1.45 16 18 F -0.21 -3.01 17.24 2.25 0.04 -2.97 16 19 C -0.13 -1.78 9.85 -26.74 -0.26 -2.05 16 20 C -0.15 -1.73 8.01 -26.74 -0.21 -1.95 16 21 C 0.11 1.29 5.96 -3.71 -0.02 1.26 16 22 C -0.13 -1.72 4.95 -26.61 -0.13 -1.85 16 23 C -0.14 -1.99 2.02 -90.58 -0.18 -2.17 16 24 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 25 C 0.46 7.56 2.69 37.16 0.10 7.66 16 26 F -0.20 -2.98 16.77 2.25 0.04 -2.94 16 27 F -0.19 -3.27 16.77 2.25 0.04 -3.23 16 28 F -0.15 -3.20 14.40 2.25 0.03 -3.16 16 29 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.39 9.60 4.95 -40.82 -0.20 9.40 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 2.12 7.00 -51.93 -0.36 1.75 16 33 H 0.08 0.66 7.80 -51.93 -0.40 0.26 16 34 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.11 1.79 8.14 -51.92 -0.42 1.37 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 1.54 8.14 -51.92 -0.42 1.12 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.88 4.78 -51.93 -0.25 0.63 16 41 H 0.08 0.84 7.77 -51.93 -0.40 0.43 16 42 H 0.09 1.45 6.11 -51.93 -0.32 1.13 16 LS Contribution 352.02 15.07 5.30 5.30 Total: -1.00 -34.27 352.02 -5.84 -40.11 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.26 Total: 7.30 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.13 Total: 7.06 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.03 Total: -53.48 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 9 Polarization: -12.46 SS G_CDS: 0.15 Total: -12.31 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.27 -5.84 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998297720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.484 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds