Wall clock time and date at job start Tue Mar 31 2020 20:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99730 * 2 1 4 4 H 1.48502 * 109.47124 * 240.00329 * 3 2 1 5 5 H 1.48492 * 109.47030 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47015 * 120.00554 * 3 2 1 7 7 C 1.38810 * 120.00300 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00019 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99835 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.52435 * 34.93039 * 10 9 7 12 12 C 1.53186 * 109.51290 * 274.85234 * 10 9 7 13 13 N 1.46928 * 108.76475 * 294.69441 * 12 10 9 14 14 C 1.34774 * 120.62901 * 126.36344 * 13 12 10 15 15 O 1.21285 * 120.00041 * 355.20470 * 14 13 12 16 16 C 1.50703 * 120.00362 * 175.20836 * 14 13 12 17 17 C 1.53001 * 115.54722 * 281.20071 * 16 14 13 18 18 F 1.39894 * 109.46959 * 300.77399 * 17 16 14 19 19 C 1.52991 * 117.50266 * 135.48934 * 16 14 13 20 20 C 1.52990 * 60.00077 * 252.51275 * 19 16 14 21 21 C 1.46927 * 118.74326 * 306.38702 * 13 12 10 22 22 C 1.53190 * 108.77360 * 53.60345 * 21 13 12 23 23 C 1.53043 * 109.49586 * 155.00448 * 10 9 7 24 24 H 1.08999 * 109.46239 * 178.59959 * 23 10 9 25 25 C 1.53000 * 109.46109 * 298.57004 * 23 10 9 26 26 F 1.39905 * 109.47180 * 180.02562 * 25 23 10 27 27 F 1.39901 * 109.47106 * 300.02420 * 25 23 10 28 28 F 1.39899 * 109.47305 * 60.02657 * 25 23 10 29 29 H 0.96998 * 120.00396 * 359.97438 * 1 2 3 30 30 H 0.96994 * 120.00064 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.59925 * 174.91530 * 12 10 9 32 32 H 1.08997 * 109.59205 * 54.48091 * 12 10 9 33 33 H 1.09004 * 109.47348 * 60.77055 * 17 16 14 34 34 H 1.08996 * 109.46922 * 180.77100 * 17 16 14 35 35 H 1.09007 * 117.50041 * 0.02562 * 19 16 14 36 36 H 1.09004 * 117.50224 * 145.01937 * 19 16 14 37 37 H 1.09000 * 117.49934 * 252.50488 * 20 19 16 38 38 H 1.09008 * 117.50304 * 107.49491 * 20 19 16 39 39 H 1.08998 * 109.58543 * 293.82335 * 21 13 12 40 40 H 1.08994 * 109.58778 * 173.39520 * 21 13 12 41 41 H 1.09004 * 109.49605 * 185.41683 * 22 21 13 42 42 H 1.08998 * 109.49581 * 65.31822 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 1 2.9701 -3.5513 0.5859 12 6 2.4186 -4.0381 -1.4408 13 7 1.1792 -4.3028 -2.1842 14 6 0.9253 -3.6661 -3.3447 15 8 1.6802 -2.8034 -3.7408 16 6 -0.2966 -4.0260 -4.1500 17 6 -0.1824 -5.3011 -4.9881 18 9 0.8779 -5.1719 -5.8914 19 6 -1.1301 -2.8772 -4.7209 20 6 -1.6631 -3.6982 -3.5452 21 6 0.2217 -5.2743 -1.6384 22 6 -0.1139 -4.8792 -0.1968 23 6 1.1816 -4.7531 0.6081 24 1 1.7177 -5.7019 0.5843 25 6 0.8484 -4.3923 2.0571 26 9 0.0476 -5.3948 2.6150 27 9 2.0325 -4.2777 2.7933 28 9 0.1602 -3.1747 2.0881 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0405 -4.9333 -1.4370 32 1 2.9592 -3.2172 -1.9120 33 1 0.0009 -6.1520 -4.3319 34 1 -1.1105 -5.4591 -5.5373 35 1 -0.7945 -1.8608 -4.5144 36 1 -1.5973 -3.0293 -5.6940 37 1 -2.4810 -4.3906 -3.7446 38 1 -1.6785 -3.2221 -2.5647 39 1 0.6645 -6.2702 -1.6505 40 1 -0.6873 -5.2689 -2.2398 41 1 -0.7480 -5.6439 0.2518 42 1 -0.6382 -3.9236 -0.1942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998297720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:09 Heat of formation + Delta-G solvation = -213.481795 kcal Electronic energy + Delta-G solvation = -32453.916075 eV Core-core repulsion = 27547.857889 eV Total energy + Delta-G solvation = -4906.058185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.91289 -48.56468 -48.44450 -48.32469 -41.46476 -39.22199 -37.61661 -35.86235 -34.25052 -32.82088 -30.47700 -28.95789 -28.11655 -26.08193 -24.80874 -24.20943 -23.43620 -23.22307 -20.97424 -19.99252 -19.28169 -19.07360 -19.02499 -18.41251 -17.84346 -17.22236 -16.92337 -16.70457 -16.46460 -16.16249 -16.00000 -15.65524 -15.49448 -15.26910 -15.07193 -14.95684 -14.81291 -14.52410 -14.48293 -14.37987 -14.23064 -14.13041 -13.75503 -13.54965 -13.16885 -12.87475 -12.85974 -12.76863 -12.51052 -12.34922 -12.31084 -12.14179 -12.01973 -11.72086 -11.58077 -11.41383 -11.18101 -11.06323 -10.60387 -9.67463 -8.89762 -7.93870 -5.18508 1.39392 1.42862 1.46818 1.64408 1.93236 2.05821 2.52705 2.55815 2.96106 3.08948 3.24941 3.35152 3.39991 3.53103 3.70765 3.79847 3.86281 3.95128 3.95752 4.09532 4.18283 4.27172 4.36389 4.42410 4.63759 4.64605 4.67634 4.68890 4.73138 4.79391 4.82590 4.87170 4.94432 5.10689 5.16969 5.26987 5.48639 5.67214 6.27127 6.51502 7.30610 7.37123 8.08945 8.32615 9.28413 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.006033 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.856841 B = 4639.716094 C = 6485.408380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.065 4.065 3 Si 0.956 3.044 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.232 4.232 8 H 0.065 0.935 9 N -0.716 5.716 10 C 0.157 3.843 11 H 0.065 0.935 12 C 0.101 3.899 13 N -0.593 5.593 14 C 0.541 3.459 15 O -0.590 6.590 16 C -0.206 4.206 17 C 0.109 3.891 18 F -0.235 7.235 19 C -0.156 4.156 20 C -0.122 4.122 21 C 0.108 3.892 22 C -0.130 4.130 23 C -0.127 4.127 24 H 0.156 0.844 25 C 0.452 3.548 26 F -0.185 7.185 27 F -0.195 7.195 28 F -0.185 7.185 29 H 0.247 0.753 30 H 0.380 0.620 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.059 0.941 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.082 0.918 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.542 -20.570 -4.214 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.219 1.219 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.364 4.364 8 H 0.083 0.917 9 N -0.358 5.358 10 C 0.047 3.953 11 H 0.083 0.917 12 C -0.025 4.025 13 N -0.324 5.324 14 C 0.329 3.671 15 O -0.469 6.469 16 C -0.209 4.209 17 C 0.054 3.946 18 F -0.216 7.216 19 C -0.193 4.193 20 C -0.158 4.158 21 C -0.013 4.013 22 C -0.169 4.169 23 C -0.147 4.147 24 H 0.174 0.826 25 C 0.398 3.602 26 F -0.167 7.167 27 F -0.177 7.177 28 F -0.167 7.167 29 H 0.055 0.945 30 H 0.216 0.784 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.129 0.871 34 H 0.144 0.856 35 H 0.078 0.922 36 H 0.154 0.846 37 H 0.178 0.822 38 H 0.100 0.900 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.990 -19.978 -4.365 21.050 hybrid contribution 0.570 2.172 0.513 2.303 sum -4.420 -17.806 -3.851 18.747 Atomic orbital electron populations 1.69759 1.05987 1.25425 1.59589 1.25284 0.96245 1.00194 1.04091 0.85480 0.77492 0.80766 0.77641 1.21855 1.22082 1.20337 1.19379 0.90951 0.85542 1.40505 0.91660 1.42477 1.05602 0.99749 1.87958 1.20791 0.94777 0.85405 0.94369 0.91732 1.22230 0.86405 1.01001 0.92848 1.47920 1.21301 1.42198 1.21016 1.20031 0.85846 0.79879 0.81312 1.90676 1.51414 1.33308 1.71532 1.22085 0.92258 1.01610 1.04972 1.21777 0.89277 0.94046 0.89487 1.92760 1.61270 1.97178 1.70425 1.23053 1.01158 0.94545 1.00538 1.23224 0.92898 1.02236 0.97491 1.22107 0.94025 0.92394 0.92784 1.21988 0.95059 1.03618 0.96204 1.22785 1.01305 1.03039 0.87558 0.82607 1.20828 0.73999 0.74383 0.91025 1.93136 1.74705 1.61002 1.87833 1.93124 1.48170 1.95993 1.80391 1.93263 1.80180 1.46313 1.96900 0.94466 0.78439 0.88418 0.93082 0.87099 0.85607 0.92241 0.84618 0.82242 0.89965 0.86835 0.86786 0.86129 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.55 13.06 21.65 0.28 -59.26 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 3 Si 0.96 49.33 29.55 68.60 2.03 51.35 16 4 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 5 H -0.29 -15.20 7.11 99.48 0.71 -14.49 16 6 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.23 -13.16 9.93 84.03 0.83 -12.33 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.72 -34.49 3.68 -322.59 -1.19 -35.68 16 10 C 0.16 5.59 2.45 45.07 0.11 5.70 16 11 H 0.06 2.39 7.70 -2.39 -0.02 2.37 16 12 C 0.10 3.38 6.05 86.36 0.52 3.90 16 13 N -0.59 -17.87 2.89 -818.91 -2.37 -20.24 16 14 C 0.54 19.84 6.77 87.66 0.59 20.43 16 15 O -0.59 -29.48 16.40 -3.05 -0.05 -29.53 16 16 C -0.21 -5.18 1.12 -52.93 -0.06 -5.23 16 17 C 0.11 1.82 7.31 71.98 0.53 2.35 16 18 F -0.24 -6.31 17.24 44.97 0.78 -5.54 16 19 C -0.16 -4.09 9.85 30.59 0.30 -3.78 16 20 C -0.12 -2.45 8.01 30.59 0.25 -2.20 16 21 C 0.11 1.97 5.96 86.36 0.51 2.48 16 22 C -0.13 -2.88 4.95 30.67 0.15 -2.73 16 23 C -0.13 -3.26 2.02 -10.76 -0.02 -3.28 16 24 H 0.16 2.58 8.14 -2.39 -0.02 2.56 16 25 C 0.45 14.18 2.69 71.98 0.19 14.38 16 26 F -0.19 -4.97 16.77 44.97 0.75 -4.22 16 27 F -0.20 -6.56 16.77 44.97 0.75 -5.81 16 28 F -0.19 -7.73 14.40 44.97 0.65 -7.09 16 29 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.38 19.54 4.95 -92.71 -0.46 19.08 16 31 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.05 2.25 7.00 -2.39 -0.02 2.23 16 33 H 0.11 1.17 7.80 -2.39 -0.02 1.15 16 34 H 0.13 1.08 8.11 -2.39 -0.02 1.06 16 35 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 36 H 0.14 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.11 1.59 4.78 -2.39 -0.01 1.58 16 41 H 0.12 1.80 7.77 -2.38 -0.02 1.78 16 42 H 0.05 1.60 6.11 -2.39 -0.01 1.58 16 Total: -1.00 -85.06 352.02 6.63 -78.42 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.62 Total: 21.32 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 4.38 Total: 16.25 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -3.27 Total: -115.18 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.05 Total: -29.53 kcal Atomic # 9 Polarization: -25.58 SS G_CDS: 2.93 Total: -22.64 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.35 kcal Total: -85.06 6.63 -78.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998297720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.058 kcal (2) G-P(sol) polarization free energy of solvation -85.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds