Wall clock time and date at job start Tue Mar 31 2020 20:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99760 * 2 1 4 4 H 1.48495 * 109.46747 * 240.00174 * 3 2 1 5 5 H 1.48495 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47083 * 120.00241 * 3 2 1 7 7 C 1.38813 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99936 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99594 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49572 * 325.06739 * 10 9 7 12 12 C 1.53195 * 109.52343 * 85.14716 * 10 9 7 13 13 N 1.46928 * 108.77419 * 65.32888 * 12 10 9 14 14 C 1.34771 * 120.63061 * 233.58560 * 13 12 10 15 15 O 1.21276 * 120.00508 * 355.84897 * 14 13 12 16 16 C 1.50700 * 119.99780 * 175.85271 * 14 13 12 17 17 C 1.53000 * 115.55281 * 65.58484 * 16 14 13 18 18 F 1.39894 * 109.47410 * 174.70704 * 17 16 14 19 19 C 1.53002 * 117.49917 * 279.87659 * 16 14 13 20 20 C 1.53001 * 60.00088 * 252.51356 * 19 16 14 21 21 C 1.46925 * 118.73771 * 53.61170 * 13 12 10 22 22 C 1.53197 * 108.77448 * 306.38992 * 21 13 12 23 23 C 1.53032 * 109.49667 * 204.99927 * 10 9 7 24 24 H 1.09003 * 109.45976 * 181.35849 * 23 10 9 25 25 C 1.53003 * 109.45825 * 61.40489 * 23 10 9 26 26 F 1.39893 * 109.47269 * 299.92969 * 25 23 10 27 27 F 1.39898 * 109.47180 * 59.92981 * 25 23 10 28 28 F 1.39901 * 109.47237 * 179.97438 * 25 23 10 29 29 H 0.96996 * 119.99765 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99944 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.58800 * 185.12122 * 12 10 9 32 32 H 1.09001 * 109.58395 * 305.54615 * 12 10 9 33 33 H 1.09006 * 109.46914 * 294.70562 * 17 16 14 34 34 H 1.08998 * 109.47261 * 54.70142 * 17 16 14 35 35 H 1.09004 * 117.49499 * 359.97438 * 19 16 14 36 36 H 1.08998 * 117.50086 * 145.02342 * 19 16 14 37 37 H 1.09005 * 117.49402 * 252.51089 * 20 19 16 38 38 H 1.09001 * 117.52618 * 107.48111 * 20 19 16 39 39 H 1.08999 * 109.59139 * 186.60104 * 21 13 12 40 40 H 1.09006 * 109.58960 * 66.17515 * 21 13 12 41 41 H 1.08998 * 109.49502 * 294.68239 * 22 21 13 42 42 H 1.09001 * 109.49687 * 174.58785 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9691 -3.5504 -0.5907 12 6 2.4210 -4.0398 1.4366 13 7 1.1830 -4.3058 2.1818 14 6 0.9313 -3.6713 3.3439 15 8 1.7627 -2.9293 3.8222 16 6 -0.3835 -3.8841 4.0490 17 6 -0.6272 -5.2988 4.5782 18 9 -1.8197 -5.3243 5.3092 19 6 -1.5949 -3.1029 3.5359 20 6 -0.9438 -2.7180 4.8659 21 6 0.2250 -5.2770 1.6363 22 6 -0.1133 -4.8802 0.1958 23 6 1.1808 -4.7526 -0.6111 24 1 1.7173 -5.7012 -0.5896 25 6 0.8449 -4.3901 -2.0591 26 9 0.1557 -3.1731 -2.0873 27 9 2.0277 -4.2734 -2.7971 28 9 0.0433 -5.3920 -2.6168 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0434 -4.9346 1.4305 32 1 2.9619 -3.2191 1.9078 33 1 -0.6996 -5.9926 3.7405 34 1 0.2007 -5.5931 5.2231 35 1 -1.4407 -2.4347 2.6886 36 1 -2.5657 -3.5968 3.5751 37 1 -1.4864 -2.9588 5.7801 38 1 -0.3612 -1.7971 4.8937 39 1 -0.6830 -5.2729 2.2393 40 1 0.6682 -6.2728 1.6465 41 1 -0.6380 -3.9249 0.1953 42 1 -0.7478 -5.6447 -0.2526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998297721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:14 Heat of formation + Delta-G solvation = -188.838266 kcal Electronic energy + Delta-G solvation = -32455.006743 eV Core-core repulsion = 27550.017181 eV Total energy + Delta-G solvation = -4904.989562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.57817 -47.83844 -47.15942 -46.88725 -40.23876 -37.94441 -36.14459 -34.27579 -32.78595 -31.27383 -29.01301 -28.19138 -26.91189 -24.23874 -23.52756 -22.74121 -22.34317 -21.91723 -19.63075 -18.73451 -17.86880 -17.77634 -17.56873 -17.09911 -16.72480 -16.11641 -16.01170 -15.49729 -15.26215 -14.77843 -14.55585 -14.34418 -14.02811 -13.85461 -13.62299 -13.54225 -13.41324 -13.11845 -13.08495 -13.06167 -12.93581 -12.75942 -12.50383 -12.30568 -11.89674 -11.82958 -11.41233 -11.33883 -11.10327 -10.88933 -10.84983 -10.70221 -10.43782 -10.36783 -10.07011 -10.00594 -9.70173 -9.42832 -9.06174 -8.34082 -6.99942 -5.77785 -3.07385 2.84110 3.13099 3.24699 3.46188 3.50235 3.51366 3.71035 4.19791 4.28863 4.43061 4.48152 4.52279 4.60471 4.72791 4.77570 4.81228 4.90610 5.11731 5.15988 5.19964 5.33842 5.34979 5.46722 5.52857 5.64832 5.67528 5.76221 5.80080 5.83346 5.94754 6.00977 6.13025 6.22139 6.34550 6.40991 6.50783 6.86424 7.67707 7.69377 8.38095 8.52391 9.51925 10.00568 10.36119 11.43999 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.006070 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.433298 B = 4611.900339 C = 6505.130227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.709 5.709 10 C 0.163 3.837 11 H 0.073 0.927 12 C 0.096 3.904 13 N -0.593 5.593 14 C 0.563 3.437 15 O -0.524 6.524 16 C -0.205 4.205 17 C 0.103 3.897 18 F -0.210 7.210 19 C -0.147 4.147 20 C -0.135 4.135 21 C 0.110 3.890 22 C -0.135 4.135 23 C -0.139 4.139 24 H 0.107 0.893 25 C 0.456 3.544 26 F -0.154 7.154 27 F -0.188 7.188 28 F -0.199 7.199 29 H 0.255 0.745 30 H 0.388 0.612 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -15.578 3.589 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.051 3.949 11 H 0.091 0.909 12 C -0.029 4.029 13 N -0.326 5.326 14 C 0.349 3.651 15 O -0.399 6.399 16 C -0.209 4.209 17 C 0.048 3.952 18 F -0.191 7.191 19 C -0.184 4.184 20 C -0.172 4.172 21 C -0.013 4.013 22 C -0.173 4.173 23 C -0.159 4.159 24 H 0.126 0.874 25 C 0.402 3.598 26 F -0.136 7.136 27 F -0.169 7.169 28 F -0.181 7.181 29 H 0.065 0.935 30 H 0.225 0.775 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.789 -14.983 3.812 15.564 hybrid contribution 0.049 0.937 -0.381 1.013 sum -1.740 -14.046 3.431 14.564 Atomic orbital electron populations 1.69635 1.05023 1.25726 1.56992 1.24660 0.95441 0.97506 1.02299 0.86314 0.78644 0.83676 0.77817 1.21289 1.21764 1.21236 1.19072 0.90864 0.83791 1.43557 0.91275 1.42445 1.05890 0.98848 1.88009 1.20596 0.94668 0.86152 0.93463 0.90917 1.22501 0.85189 1.00857 0.94359 1.47757 1.21199 1.41931 1.21715 1.18985 0.86186 0.79502 0.80433 1.90698 1.47083 1.36583 1.65526 1.22055 0.95929 0.95057 1.07857 1.21482 0.83818 0.94545 0.95371 1.92756 1.49324 1.97375 1.79654 1.23160 0.94315 1.01606 0.99286 1.22979 1.01576 0.97240 0.95446 1.21779 0.93564 0.91856 0.94135 1.21955 0.95881 1.04412 0.95041 1.22754 1.00648 1.02965 0.89578 0.87440 1.20454 0.74410 0.75216 0.89761 1.93315 1.79408 1.44122 1.96705 1.93139 1.47883 1.95962 1.79918 1.93117 1.75035 1.62023 1.87879 0.93535 0.77484 0.92769 0.88078 0.89635 0.90087 0.86777 0.87811 0.87831 0.87430 0.89038 0.91263 0.89022 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 2 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 3 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.46 9.93 -15.05 -0.15 -6.61 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -16.20 3.69 -53.31 -0.20 -16.39 16 10 C 0.16 2.87 2.45 -67.81 -0.17 2.71 16 11 H 0.07 1.31 7.70 -51.93 -0.40 0.91 16 12 C 0.10 1.57 6.03 -3.71 -0.02 1.54 16 13 N -0.59 -8.97 2.89 -172.76 -0.50 -9.46 16 14 C 0.56 9.73 6.98 -10.99 -0.08 9.66 16 15 O -0.52 -11.42 16.13 5.56 0.09 -11.33 16 16 C -0.21 -2.85 1.38 -155.66 -0.22 -3.07 16 17 C 0.10 1.08 7.20 37.16 0.27 1.35 16 18 F -0.21 -2.45 15.94 2.25 0.04 -2.42 16 19 C -0.15 -2.05 9.36 -26.73 -0.25 -2.30 16 20 C -0.14 -1.94 9.48 -26.73 -0.25 -2.20 16 21 C 0.11 1.23 5.57 -3.71 -0.02 1.21 16 22 C -0.13 -1.71 4.95 -26.61 -0.13 -1.84 16 23 C -0.14 -1.95 2.01 -90.58 -0.18 -2.13 16 24 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 25 C 0.46 7.47 2.69 37.16 0.10 7.57 16 26 F -0.15 -3.17 14.40 2.25 0.03 -3.14 16 27 F -0.19 -3.23 16.77 2.25 0.04 -3.19 16 28 F -0.20 -2.96 16.77 2.25 0.04 -2.92 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.39 9.44 4.94 -40.82 -0.20 9.24 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.02 7.03 -51.93 -0.37 1.66 16 33 H 0.09 0.70 5.69 -51.93 -0.30 0.41 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 36 H 0.10 1.23 7.94 -51.93 -0.41 0.82 16 37 H 0.10 1.29 7.63 -51.93 -0.40 0.89 16 38 H 0.11 1.79 8.00 -51.93 -0.42 1.37 16 39 H 0.09 0.91 4.31 -51.93 -0.22 0.69 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.47 6.11 -51.93 -0.32 1.15 16 42 H 0.08 0.84 7.76 -51.93 -0.40 0.44 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -32.18 348.02 -5.80 -37.98 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.09 Total: 8.66 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.20 Total: 5.73 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.03 Total: -52.23 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 9 Polarization: -11.81 SS G_CDS: 0.14 Total: -11.66 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.18 -5.80 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998297721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.857 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds