Wall clock time and date at job start Tue Mar 31 2020 20:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99760 * 2 1 4 4 H 1.48495 * 109.46747 * 240.00174 * 3 2 1 5 5 H 1.48495 * 109.46996 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47083 * 120.00241 * 3 2 1 7 7 C 1.38813 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99936 * 179.97438 * 7 2 1 9 9 N 1.36946 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99594 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49572 * 325.06739 * 10 9 7 12 12 C 1.53195 * 109.52343 * 85.14716 * 10 9 7 13 13 N 1.46928 * 108.77419 * 65.32888 * 12 10 9 14 14 C 1.34771 * 120.63061 * 233.58560 * 13 12 10 15 15 O 1.21276 * 120.00508 * 355.84897 * 14 13 12 16 16 C 1.50700 * 119.99780 * 175.85271 * 14 13 12 17 17 C 1.53000 * 115.55281 * 65.58484 * 16 14 13 18 18 F 1.39894 * 109.47410 * 174.70704 * 17 16 14 19 19 C 1.53002 * 117.49917 * 279.87659 * 16 14 13 20 20 C 1.53001 * 60.00088 * 252.51356 * 19 16 14 21 21 C 1.46925 * 118.73771 * 53.61170 * 13 12 10 22 22 C 1.53197 * 108.77448 * 306.38992 * 21 13 12 23 23 C 1.53032 * 109.49667 * 204.99927 * 10 9 7 24 24 H 1.09003 * 109.45976 * 181.35849 * 23 10 9 25 25 C 1.53003 * 109.45825 * 61.40489 * 23 10 9 26 26 F 1.39893 * 109.47269 * 299.92969 * 25 23 10 27 27 F 1.39898 * 109.47180 * 59.92981 * 25 23 10 28 28 F 1.39901 * 109.47237 * 179.97438 * 25 23 10 29 29 H 0.96996 * 119.99765 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99944 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.58800 * 185.12122 * 12 10 9 32 32 H 1.09001 * 109.58395 * 305.54615 * 12 10 9 33 33 H 1.09006 * 109.46914 * 294.70562 * 17 16 14 34 34 H 1.08998 * 109.47261 * 54.70142 * 17 16 14 35 35 H 1.09004 * 117.49499 * 359.97438 * 19 16 14 36 36 H 1.08998 * 117.50086 * 145.02342 * 19 16 14 37 37 H 1.09005 * 117.49402 * 252.51089 * 20 19 16 38 38 H 1.09001 * 117.52618 * 107.48111 * 20 19 16 39 39 H 1.08999 * 109.59139 * 186.60104 * 21 13 12 40 40 H 1.09006 * 109.58960 * 66.17515 * 21 13 12 41 41 H 1.08998 * 109.49502 * 294.68239 * 22 21 13 42 42 H 1.09001 * 109.49687 * 174.58785 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9691 -3.5504 -0.5907 12 6 2.4210 -4.0398 1.4366 13 7 1.1830 -4.3058 2.1818 14 6 0.9313 -3.6713 3.3439 15 8 1.7627 -2.9293 3.8222 16 6 -0.3835 -3.8841 4.0490 17 6 -0.6272 -5.2988 4.5782 18 9 -1.8197 -5.3243 5.3092 19 6 -1.5949 -3.1029 3.5359 20 6 -0.9438 -2.7180 4.8659 21 6 0.2250 -5.2770 1.6363 22 6 -0.1133 -4.8802 0.1958 23 6 1.1808 -4.7526 -0.6111 24 1 1.7173 -5.7012 -0.5896 25 6 0.8449 -4.3901 -2.0591 26 9 0.1557 -3.1731 -2.0873 27 9 2.0277 -4.2734 -2.7971 28 9 0.0433 -5.3920 -2.6168 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0434 -4.9346 1.4305 32 1 2.9619 -3.2191 1.9078 33 1 -0.6996 -5.9926 3.7405 34 1 0.2007 -5.5931 5.2231 35 1 -1.4407 -2.4347 2.6886 36 1 -2.5657 -3.5968 3.5751 37 1 -1.4864 -2.9588 5.7801 38 1 -0.3612 -1.7971 4.8937 39 1 -0.6830 -5.2729 2.2393 40 1 0.6682 -6.2728 1.6465 41 1 -0.6380 -3.9249 0.1953 42 1 -0.7478 -5.6447 -0.2526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998297721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:13 Heat of formation + Delta-G solvation = -209.153737 kcal Electronic energy + Delta-G solvation = -32455.887688 eV Core-core repulsion = 27550.017181 eV Total energy + Delta-G solvation = -4905.870507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.90681 -48.68438 -48.43993 -48.31813 -41.49909 -39.24705 -37.41108 -35.90010 -34.28365 -32.83152 -30.57869 -29.22256 -28.15266 -26.02726 -24.80522 -24.07992 -23.50031 -23.12619 -20.91599 -20.04324 -19.29768 -19.08222 -19.05910 -18.53946 -17.94467 -17.28174 -16.97528 -16.72987 -16.50985 -16.11417 -16.02846 -15.72534 -15.46151 -15.22264 -15.04131 -14.87789 -14.80588 -14.51727 -14.47615 -14.34147 -14.15229 -14.10233 -13.76941 -13.61822 -13.22592 -12.95293 -12.86099 -12.78270 -12.54948 -12.51935 -12.32614 -12.14726 -11.91983 -11.68609 -11.56363 -11.46215 -11.11768 -10.98308 -10.73834 -9.69728 -8.89511 -7.92553 -5.17609 1.41391 1.43970 1.48151 1.53549 1.92230 2.02212 2.53749 2.58568 2.96851 3.09144 3.25743 3.36161 3.42442 3.43434 3.69614 3.76276 3.78870 3.93946 3.95889 4.00402 4.10563 4.23915 4.32428 4.36628 4.61625 4.65267 4.67091 4.67965 4.73826 4.80552 4.82993 4.86821 4.92510 5.11181 5.14493 5.26611 5.50412 5.63294 6.28096 6.45740 7.22578 7.38260 8.10358 8.33583 9.29462 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.009411 B = 0.006070 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.433298 B = 4611.900339 C = 6505.130227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.718 5.718 10 C 0.155 3.845 11 H 0.068 0.932 12 C 0.103 3.897 13 N -0.590 5.590 14 C 0.551 3.449 15 O -0.584 6.584 16 C -0.194 4.194 17 C 0.109 3.891 18 F -0.214 7.214 19 C -0.138 4.138 20 C -0.147 4.147 21 C 0.105 3.895 22 C -0.132 4.132 23 C -0.126 4.126 24 H 0.158 0.842 25 C 0.451 3.549 26 F -0.186 7.186 27 F -0.195 7.195 28 F -0.186 7.186 29 H 0.246 0.754 30 H 0.380 0.620 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.051 0.949 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.527 -19.597 3.782 20.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.223 1.223 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.086 0.914 9 N -0.360 5.360 10 C 0.045 3.955 11 H 0.085 0.915 12 C -0.022 4.022 13 N -0.321 5.321 14 C 0.339 3.661 15 O -0.464 6.464 16 C -0.198 4.198 17 C 0.055 3.945 18 F -0.195 7.195 19 C -0.175 4.175 20 C -0.184 4.184 21 C -0.016 4.016 22 C -0.170 4.170 23 C -0.146 4.146 24 H 0.176 0.824 25 C 0.397 3.603 26 F -0.167 7.167 27 F -0.176 7.176 28 F -0.168 7.168 29 H 0.055 0.945 30 H 0.216 0.784 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.139 0.861 41 H 0.070 0.930 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.987 -19.074 3.973 19.585 hybrid contribution 0.181 2.113 -0.514 2.182 sum -1.806 -16.961 3.459 17.404 Atomic orbital electron populations 1.69769 1.06001 1.25407 1.59530 1.25286 0.96200 1.00180 1.04139 0.85486 0.77451 0.80799 0.77673 1.20462 1.22323 1.21669 1.19385 0.91002 0.85423 1.40509 0.91445 1.42525 1.05669 0.99810 1.88004 1.20830 0.94803 0.85297 0.94559 0.91462 1.22269 0.86096 1.01399 0.92476 1.47890 1.21470 1.41925 1.20786 1.19608 0.86720 0.78682 0.81078 1.90670 1.49181 1.39155 1.67352 1.22087 0.93749 0.97151 1.06784 1.21617 0.84047 0.92153 0.96723 1.92755 1.49630 1.97195 1.79877 1.23029 0.95816 1.01266 0.97405 1.22962 1.02028 0.96672 0.96776 1.22214 0.93813 0.92748 0.92827 1.21980 0.95220 1.03611 0.96190 1.22791 1.01165 1.03236 0.87448 0.82403 1.20857 0.74016 0.74370 0.91077 1.93261 1.80151 1.46400 1.96901 1.93125 1.48213 1.95974 1.80317 1.93135 1.74695 1.61092 1.87866 0.94500 0.78423 0.87969 0.92629 0.86138 0.88776 0.90776 0.84801 0.85425 0.90927 0.87471 0.86068 0.93046 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.57 13.06 21.65 0.28 -58.28 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 3 Si 0.96 48.31 29.55 68.60 2.03 50.34 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 6 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 7 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 9 N -0.72 -33.51 3.69 -322.57 -1.19 -34.70 16 10 C 0.16 5.26 2.45 45.07 0.11 5.37 16 11 H 0.07 2.36 7.70 -2.39 -0.02 2.34 16 12 C 0.10 3.18 6.03 86.36 0.52 3.70 16 13 N -0.59 -16.56 2.89 -818.90 -2.37 -18.93 16 14 C 0.55 18.91 6.98 87.66 0.61 19.52 16 15 O -0.58 -26.52 16.13 -3.02 -0.05 -26.57 16 16 C -0.19 -5.13 1.38 -52.93 -0.07 -5.20 16 17 C 0.11 1.86 7.20 71.98 0.52 2.38 16 18 F -0.21 -4.15 15.94 44.97 0.72 -3.43 16 19 C -0.14 -3.82 9.36 30.60 0.29 -3.53 16 20 C -0.15 -4.28 9.48 30.60 0.29 -3.99 16 21 C 0.11 1.84 5.57 86.36 0.48 2.32 16 22 C -0.13 -2.87 4.95 30.67 0.15 -2.72 16 23 C -0.13 -3.12 2.01 -10.77 -0.02 -3.14 16 24 H 0.16 2.40 8.14 -2.39 -0.02 2.38 16 25 C 0.45 13.90 2.69 71.98 0.19 14.10 16 26 F -0.19 -7.68 14.40 44.97 0.65 -7.03 16 27 F -0.19 -6.40 16.77 44.97 0.75 -5.64 16 28 F -0.19 -4.97 16.77 44.97 0.75 -4.22 16 29 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.38 19.11 4.94 -92.71 -0.46 18.65 16 31 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 2.27 7.03 -2.39 -0.02 2.25 16 33 H 0.12 1.24 5.69 -2.38 -0.01 1.23 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 35 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 36 H 0.13 2.87 7.94 -2.39 -0.02 2.85 16 37 H 0.13 3.04 7.63 -2.38 -0.02 3.02 16 38 H 0.07 2.62 8.00 -2.39 -0.02 2.60 16 39 H 0.11 1.59 4.31 -2.39 -0.01 1.58 16 40 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.05 1.59 6.11 -2.39 -0.01 1.58 16 42 H 0.12 1.80 7.76 -2.39 -0.02 1.78 16 Total: -1.00 -77.30 348.02 6.57 -70.72 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.62 Total: 24.17 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 4.37 Total: 13.58 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -3.27 Total: -111.91 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 9 Polarization: -23.20 SS G_CDS: 2.87 Total: -20.33 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -77.30 6.57 -70.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998297721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.429 kcal (2) G-P(sol) polarization free energy of solvation -77.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds