Wall clock time and date at job start Tue Mar 31 2020 20:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48506 * 109.46867 * 239.99836 * 3 2 1 5 5 H 1.48491 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46823 * 120.00310 * 3 2 1 7 7 C 1.38817 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99608 * 0.02562 * 7 2 1 10 10 C 1.46709 * 119.99786 * 180.02562 * 9 7 2 11 11 C 1.52876 * 109.19957 * 84.14295 * 10 9 7 12 12 C 1.53222 * 109.86276 * 178.51872 * 11 10 9 13 13 H 1.09111 * 110.64086 * 118.86042 * 12 11 10 14 14 C 1.53349 * 109.03684 * 240.65335 * 12 11 10 15 15 C 1.52842 * 109.83485 * 61.09803 * 14 12 11 16 16 C 1.52829 * 110.55093 * 58.31207 * 15 14 12 17 17 C 1.53330 * 109.87629 * 301.81667 * 16 15 14 18 18 H 1.09138 * 110.52928 * 176.84114 * 17 16 15 19 19 C 1.52864 * 109.20790 * 204.99832 * 10 9 7 20 20 N 1.47507 * 107.81550 * 55.95197 * 17 16 15 21 21 C 1.34791 * 121.93846 * 120.20729 * 20 17 16 22 22 O 1.21285 * 119.99815 * 354.88176 * 21 20 17 23 23 C 1.50698 * 120.00563 * 174.88619 * 21 20 17 24 24 H 1.09006 * 109.46745 * 344.04330 * 23 21 20 25 25 F 1.39901 * 109.47005 * 224.04673 * 23 21 20 26 26 C 1.52998 * 109.47257 * 104.04199 * 23 21 20 27 27 F 1.39891 * 109.47037 * 60.00331 * 26 23 21 28 28 F 1.39906 * 109.46846 * 180.02562 * 26 23 21 29 29 F 1.39895 * 109.47167 * 300.00198 * 26 23 21 30 30 H 0.96996 * 119.99941 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00198 * 359.97438 * 9 7 2 32 32 H 1.09054 * 108.91278 * 324.57910 * 10 9 7 33 33 H 1.08975 * 109.68253 * 57.68398 * 11 10 9 34 34 H 1.09277 * 109.22935 * 298.39259 * 11 10 9 35 35 H 1.09112 * 109.45269 * 181.31319 * 14 12 11 36 36 H 1.09108 * 109.42963 * 300.88667 * 14 12 11 37 37 H 1.09389 * 108.99295 * 178.10883 * 15 14 12 38 38 H 1.08893 * 109.79937 * 297.01835 * 15 14 12 39 39 H 1.09140 * 109.45037 * 181.65342 * 16 15 14 40 40 H 1.09103 * 109.49392 * 62.10069 * 16 15 14 41 41 H 1.09270 * 109.23516 * 61.76714 * 19 10 9 42 42 H 1.08976 * 109.67746 * 302.43961 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0590 -3.6586 -0.0016 11 6 2.4369 -4.0210 1.4347 12 6 3.1722 -5.3651 1.4563 13 1 4.1813 -5.2451 1.8536 14 6 2.3729 -6.3588 2.3079 15 6 0.9884 -6.5701 1.6959 16 6 1.1086 -7.0852 0.2620 17 6 1.9144 -6.0915 -0.5831 18 1 2.0545 -6.4752 -1.5951 19 6 1.1779 -4.7480 -0.6128 20 7 3.2174 -5.8894 0.0781 21 6 4.3816 -6.1753 -0.5380 22 8 4.3761 -6.6986 -1.6322 23 6 5.6901 -5.8450 0.1325 24 1 5.5136 -5.1433 0.9478 25 9 6.5591 -5.2678 -0.7996 26 6 6.3159 -7.1257 0.6884 27 9 6.5424 -8.0262 -0.3579 28 9 7.5304 -6.8189 1.3114 29 9 5.4469 -7.7029 1.6205 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.9643 -3.5441 -0.5988 33 1 1.5373 -4.0816 2.0468 34 1 3.0904 -3.2454 1.8416 35 1 2.9026 -7.3120 2.3471 36 1 2.2672 -5.9662 3.3204 37 1 0.4431 -7.3057 2.2943 38 1 0.4338 -5.6330 1.7059 39 1 0.1119 -7.2016 -0.1670 40 1 1.6118 -8.0532 0.2639 41 1 0.9473 -4.4857 -1.6482 42 1 0.2469 -4.8247 -0.0516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039276814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:26 Heat of formation + Delta-G solvation = -212.643806 kcal Electronic energy + Delta-G solvation = -32233.409867 eV Core-core repulsion = 27327.388020 eV Total energy + Delta-G solvation = -4906.021847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.64958 -48.61338 -48.02463 -47.84888 -41.07802 -38.36415 -35.06018 -33.60308 -32.76307 -32.04091 -30.93173 -29.01191 -25.93025 -25.53645 -24.45002 -23.29155 -22.03761 -21.26206 -20.42648 -19.45255 -19.03489 -18.81011 -17.85482 -17.73628 -16.81430 -16.48738 -15.89783 -15.59231 -14.97634 -14.87664 -14.76770 -14.73888 -14.52784 -14.43398 -14.35379 -14.15579 -14.11981 -13.91364 -13.87628 -13.55143 -13.50338 -12.99199 -12.95863 -12.57414 -12.17448 -11.87446 -11.53384 -11.37268 -11.07997 -11.02958 -10.95758 -10.85864 -10.60791 -10.36320 -10.19228 -10.09393 -9.84298 -9.70942 -9.01011 -8.67967 -7.05745 -5.83972 -3.13543 1.62985 2.18588 2.51456 3.07688 3.39213 3.43494 3.44951 3.45068 3.45669 3.80020 4.08194 4.45126 4.47621 4.58880 4.73551 4.80459 4.91803 5.10441 5.13057 5.23914 5.34308 5.41550 5.52964 5.61233 5.75209 5.81044 5.87446 5.95296 6.02301 6.05992 6.10300 6.16858 6.35637 6.43612 6.46700 6.73835 6.92188 7.17095 7.62135 7.69421 8.34013 9.45785 10.00973 10.36304 11.38277 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.004174 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.971939 B = 6706.604958 C = 7769.104203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.723 5.723 10 C 0.189 3.811 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.085 0.915 14 C -0.125 4.125 15 C -0.122 4.122 16 C -0.125 4.125 17 C 0.147 3.853 18 H 0.103 0.897 19 C -0.136 4.136 20 N -0.579 5.579 21 C 0.499 3.501 22 O -0.503 6.503 23 C 0.033 3.967 24 H 0.150 0.850 25 F -0.149 7.149 26 C 0.444 3.556 27 F -0.160 7.160 28 F -0.167 7.167 29 F -0.166 7.166 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 -16.947 5.732 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.078 3.922 11 C -0.190 4.190 12 C 0.024 3.976 13 H 0.102 0.898 14 C -0.163 4.163 15 C -0.159 4.159 16 C -0.163 4.163 17 C 0.045 3.955 18 H 0.121 0.879 19 C -0.175 4.175 20 N -0.312 5.312 21 C 0.282 3.718 22 O -0.378 6.378 23 C -0.008 4.008 24 H 0.167 0.833 25 F -0.129 7.129 26 C 0.389 3.611 27 F -0.141 7.141 28 F -0.148 7.148 29 F -0.147 7.147 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.164 -17.073 5.090 19.202 hybrid contribution 0.461 0.937 0.209 1.065 sum 7.626 -16.136 5.299 18.617 Atomic orbital electron populations 1.69640 1.05108 1.25876 1.57318 1.24725 0.95481 0.97659 1.02727 0.86301 0.78590 0.83593 0.77900 1.21224 1.21648 1.21240 1.19156 0.90889 0.84068 1.43239 0.91349 1.42465 1.05734 0.99589 1.88565 1.19886 0.94397 0.85866 0.92046 1.22831 1.00821 0.93172 1.02216 1.21967 0.99891 0.95420 0.80352 0.89761 1.21946 0.96407 0.98997 0.98937 1.21492 0.96744 1.02295 0.95394 1.21952 1.00363 0.98259 0.95774 1.21656 0.80612 0.96188 0.97058 0.87881 1.22314 0.99351 0.93244 1.02626 1.48498 1.05211 1.61909 1.15571 1.19825 0.84519 0.80833 0.86673 1.90794 1.86195 1.41157 1.19609 1.22851 0.89437 0.94196 0.94278 0.83314 1.93022 1.68892 1.84257 1.66754 1.20465 0.77427 0.86338 0.76909 1.93296 1.94552 1.69449 1.56798 1.93260 1.45618 1.92921 1.83026 1.93245 1.69148 1.85894 1.66437 0.93397 0.78233 0.93715 0.90652 0.91083 0.91654 0.90289 0.91905 0.90374 0.90418 0.91813 0.91015 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.10 13.06 55.49 0.72 -26.38 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.40 9.91 -15.06 -0.15 -6.55 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.82 5.11 -53.40 -0.27 -17.10 16 10 C 0.19 3.38 2.50 -67.95 -0.17 3.21 16 11 C -0.15 -2.19 5.00 -26.68 -0.13 -2.32 16 12 C 0.13 1.44 3.32 -67.08 -0.22 1.22 16 13 H 0.08 0.78 5.52 -51.87 -0.29 0.50 16 14 C -0.12 -1.19 5.38 -26.63 -0.14 -1.33 16 15 C -0.12 -1.19 5.36 -26.90 -0.14 -1.33 16 16 C -0.13 -1.29 5.37 -26.65 -0.14 -1.44 16 17 C 0.15 1.90 3.47 -67.09 -0.23 1.67 16 18 H 0.10 1.42 7.20 -51.85 -0.37 1.05 16 19 C -0.14 -2.04 4.90 -26.68 -0.13 -2.17 16 20 N -0.58 -7.50 1.80 -156.31 -0.28 -7.78 16 21 C 0.50 7.15 6.47 -10.98 -0.07 7.08 16 22 O -0.50 -8.79 16.18 5.55 0.09 -8.70 16 23 C 0.03 0.40 3.28 -27.88 -0.09 0.31 16 24 H 0.15 1.35 5.69 -51.93 -0.30 1.05 16 25 F -0.15 -2.08 16.95 2.25 0.04 -2.05 16 26 C 0.44 5.04 2.90 37.16 0.11 5.15 16 27 F -0.16 -2.12 16.69 2.25 0.04 -2.09 16 28 F -0.17 -1.80 17.30 2.25 0.04 -1.76 16 29 F -0.17 -1.72 17.02 2.25 0.04 -1.68 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.38 9.53 7.79 -40.82 -0.32 9.21 16 32 H 0.04 0.89 7.82 -51.90 -0.41 0.48 16 33 H 0.07 1.11 6.36 -51.94 -0.33 0.78 16 34 H 0.07 1.13 8.17 -51.77 -0.42 0.71 16 35 H 0.06 0.60 8.15 -51.87 -0.42 0.18 16 36 H 0.08 0.67 8.15 -51.87 -0.42 0.25 16 37 H 0.06 0.53 8.17 -51.71 -0.42 0.11 16 38 H 0.08 0.86 5.22 -51.99 -0.27 0.59 16 39 H 0.08 0.72 8.15 -51.85 -0.42 0.29 16 40 H 0.06 0.65 8.15 -51.87 -0.42 0.23 16 41 H 0.07 1.15 8.16 -51.78 -0.42 0.73 16 42 H 0.07 1.06 6.38 -51.94 -0.33 0.73 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -30.57 343.59 -6.17 -36.74 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.12 Total: 5.73 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.62 Total: 3.14 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: 0.17 Total: -51.25 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 0.15 Total: -7.58 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.57 -6.17 -36.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039276814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.907 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds