Wall clock time and date at job start Tue Mar 31 2020 20:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99981 * 2 1 4 4 H 1.48506 * 109.46867 * 239.99836 * 3 2 1 5 5 H 1.48491 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46823 * 120.00310 * 3 2 1 7 7 C 1.38817 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00002 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99608 * 0.02562 * 7 2 1 10 10 C 1.46709 * 119.99786 * 180.02562 * 9 7 2 11 11 C 1.52876 * 109.19957 * 84.14295 * 10 9 7 12 12 C 1.53222 * 109.86276 * 178.51872 * 11 10 9 13 13 H 1.09111 * 110.64086 * 118.86042 * 12 11 10 14 14 C 1.53349 * 109.03684 * 240.65335 * 12 11 10 15 15 C 1.52842 * 109.83485 * 61.09803 * 14 12 11 16 16 C 1.52829 * 110.55093 * 58.31207 * 15 14 12 17 17 C 1.53330 * 109.87629 * 301.81667 * 16 15 14 18 18 H 1.09138 * 110.52928 * 176.84114 * 17 16 15 19 19 C 1.52864 * 109.20790 * 204.99832 * 10 9 7 20 20 N 1.47507 * 107.81550 * 55.95197 * 17 16 15 21 21 C 1.34791 * 121.93846 * 120.20729 * 20 17 16 22 22 O 1.21285 * 119.99815 * 354.88176 * 21 20 17 23 23 C 1.50698 * 120.00563 * 174.88619 * 21 20 17 24 24 H 1.09006 * 109.46745 * 344.04330 * 23 21 20 25 25 F 1.39901 * 109.47005 * 224.04673 * 23 21 20 26 26 C 1.52998 * 109.47257 * 104.04199 * 23 21 20 27 27 F 1.39891 * 109.47037 * 60.00331 * 26 23 21 28 28 F 1.39906 * 109.46846 * 180.02562 * 26 23 21 29 29 F 1.39895 * 109.47167 * 300.00198 * 26 23 21 30 30 H 0.96996 * 119.99941 * 0.02562 * 1 2 3 31 31 H 0.96994 * 120.00198 * 359.97438 * 9 7 2 32 32 H 1.09054 * 108.91278 * 324.57910 * 10 9 7 33 33 H 1.08975 * 109.68253 * 57.68398 * 11 10 9 34 34 H 1.09277 * 109.22935 * 298.39259 * 11 10 9 35 35 H 1.09112 * 109.45269 * 181.31319 * 14 12 11 36 36 H 1.09108 * 109.42963 * 300.88667 * 14 12 11 37 37 H 1.09389 * 108.99295 * 178.10883 * 15 14 12 38 38 H 1.08893 * 109.79937 * 297.01835 * 15 14 12 39 39 H 1.09140 * 109.45037 * 181.65342 * 16 15 14 40 40 H 1.09103 * 109.49392 * 62.10069 * 16 15 14 41 41 H 1.09270 * 109.23516 * 61.76714 * 19 10 9 42 42 H 1.08976 * 109.67746 * 302.43961 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0590 -3.6586 -0.0016 11 6 2.4369 -4.0210 1.4347 12 6 3.1722 -5.3651 1.4563 13 1 4.1813 -5.2451 1.8536 14 6 2.3729 -6.3588 2.3079 15 6 0.9884 -6.5701 1.6959 16 6 1.1086 -7.0852 0.2620 17 6 1.9144 -6.0915 -0.5831 18 1 2.0545 -6.4752 -1.5951 19 6 1.1779 -4.7480 -0.6128 20 7 3.2174 -5.8894 0.0781 21 6 4.3816 -6.1753 -0.5380 22 8 4.3761 -6.6986 -1.6322 23 6 5.6901 -5.8450 0.1325 24 1 5.5136 -5.1433 0.9478 25 9 6.5591 -5.2678 -0.7996 26 6 6.3159 -7.1257 0.6884 27 9 6.5424 -8.0262 -0.3579 28 9 7.5304 -6.8189 1.3114 29 9 5.4469 -7.7029 1.6205 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0016 32 1 2.9643 -3.5441 -0.5988 33 1 1.5373 -4.0816 2.0468 34 1 3.0904 -3.2454 1.8416 35 1 2.9026 -7.3120 2.3471 36 1 2.2672 -5.9662 3.3204 37 1 0.4431 -7.3057 2.2943 38 1 0.4338 -5.6330 1.7059 39 1 0.1119 -7.2016 -0.1670 40 1 1.6118 -8.0532 0.2639 41 1 0.9473 -4.4857 -1.6482 42 1 0.2469 -4.8247 -0.0516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039276814.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:25 Heat of formation + Delta-G solvation = -230.336661 kcal Electronic energy + Delta-G solvation = -32234.177087 eV Core-core repulsion = 27327.388020 eV Total energy + Delta-G solvation = -4906.789067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.55622 -49.60311 -48.93538 -48.78104 -42.16813 -39.53812 -36.68726 -34.61636 -33.97896 -33.59033 -31.97028 -30.65526 -27.02139 -26.74197 -25.64720 -24.81675 -23.07149 -22.29969 -21.70473 -20.41639 -19.96236 -19.81026 -19.36719 -18.83444 -18.19919 -17.56379 -17.06557 -16.85100 -16.20851 -15.96735 -15.82603 -15.69513 -15.67096 -15.57016 -15.31893 -15.19592 -15.11591 -15.04974 -15.01022 -14.84365 -14.76332 -14.20222 -13.94995 -13.84627 -13.59042 -12.95553 -12.89183 -12.83299 -12.58928 -12.36695 -12.22636 -11.98139 -11.89542 -11.83741 -11.58114 -11.48621 -11.24180 -10.95532 -10.88784 -9.79621 -9.00030 -7.93618 -5.21484 0.62224 1.12320 1.47684 1.49476 1.51037 1.55334 2.15741 2.45843 2.54589 2.56357 2.85987 3.17232 3.40019 3.49655 3.53859 3.79707 3.84424 3.96097 3.99244 4.06989 4.24904 4.33122 4.33785 4.52687 4.62803 4.67390 4.88829 4.94946 4.96204 5.02242 5.09522 5.16802 5.24071 5.37548 5.42260 5.49754 5.52010 5.62102 6.09049 6.28551 6.59565 7.35522 8.10228 8.34109 9.29257 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.004174 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.971939 B = 6706.604958 C = 7769.104203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.964 3.036 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.185 3.815 11 C -0.137 4.137 12 C 0.128 3.872 13 H 0.112 0.888 14 C -0.121 4.121 15 C -0.122 4.122 16 C -0.118 4.118 17 C 0.148 3.852 18 H 0.090 0.910 19 C -0.127 4.127 20 N -0.577 5.577 21 C 0.493 3.507 22 O -0.542 6.542 23 C 0.032 3.968 24 H 0.182 0.818 25 F -0.162 7.162 26 C 0.452 3.548 27 F -0.173 7.173 28 F -0.161 7.161 29 F -0.156 7.156 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.022 0.978 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 -18.187 7.650 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.076 3.924 11 C -0.178 4.178 12 C 0.025 3.975 13 H 0.130 0.870 14 C -0.159 4.159 15 C -0.160 4.160 16 C -0.156 4.156 17 C 0.045 3.955 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.308 5.308 21 C 0.277 3.723 22 O -0.420 6.420 23 C -0.008 4.008 24 H 0.198 0.802 25 F -0.142 7.142 26 C 0.396 3.604 27 F -0.154 7.154 28 F -0.142 7.142 29 F -0.137 7.137 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.040 0.960 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.007 -18.350 7.039 21.222 hybrid contribution 0.215 1.274 -0.426 1.361 sum 8.222 -17.076 6.613 20.073 Atomic orbital electron populations 1.69782 1.06413 1.25983 1.59521 1.25431 0.96241 1.00659 1.03900 0.85352 0.77320 0.79872 0.78077 1.21117 1.22301 1.20109 1.19489 0.91177 0.85274 1.40979 0.91108 1.42639 1.05410 1.00705 1.88758 1.20071 0.93439 0.84745 0.94104 1.22579 1.01178 0.94917 0.99104 1.22136 1.01442 0.93972 0.79909 0.87036 1.21966 0.95816 0.98880 0.99194 1.21505 0.97105 1.02232 0.95123 1.21920 1.00446 0.97448 0.95791 1.21611 0.80937 0.95437 0.97466 0.89154 1.22195 0.99571 0.93508 1.01291 1.48605 1.04928 1.61146 1.16105 1.20219 0.85478 0.80299 0.86305 1.90775 1.86854 1.43008 1.21316 1.23028 0.87986 0.95301 0.94513 0.80156 1.92993 1.69198 1.84536 1.67490 1.20269 0.77649 0.85706 0.76758 1.93274 1.94659 1.69894 1.57618 1.93277 1.45283 1.92839 1.82805 1.93263 1.68841 1.85694 1.65931 0.94097 0.79423 0.96011 0.90287 0.92216 0.90366 0.88422 0.89724 0.91708 0.89249 0.91111 0.92958 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.23 13.06 21.65 0.28 -56.95 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 3 Si 0.96 45.03 29.55 68.60 2.03 47.06 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -12.60 9.91 84.03 0.83 -11.77 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 9 N -0.74 -34.65 5.11 -322.86 -1.65 -36.30 16 10 C 0.19 6.62 2.50 44.87 0.11 6.73 16 11 C -0.14 -3.80 5.00 30.63 0.15 -3.65 16 12 C 0.13 2.53 3.32 44.99 0.15 2.68 16 13 H 0.11 1.62 5.52 -2.33 -0.01 1.61 16 14 C -0.12 -1.81 5.38 30.66 0.16 -1.65 16 15 C -0.12 -1.98 5.36 30.48 0.16 -1.81 16 16 C -0.12 -2.14 5.37 30.65 0.16 -1.98 16 17 C 0.15 3.68 3.47 44.99 0.16 3.84 16 18 H 0.09 2.51 7.20 -2.31 -0.02 2.49 16 19 C -0.13 -3.78 4.90 30.63 0.15 -3.63 16 20 N -0.58 -13.98 1.80 -766.82 -1.38 -15.37 16 21 C 0.49 13.60 6.47 87.65 0.57 14.16 16 22 O -0.54 -18.95 16.18 -3.04 -0.05 -19.00 16 23 C 0.03 0.71 3.28 29.85 0.10 0.81 16 24 H 0.18 2.71 5.69 -2.38 -0.01 2.70 16 25 F -0.16 -4.38 16.95 44.97 0.76 -3.61 16 26 C 0.45 9.27 2.90 71.98 0.21 9.48 16 27 F -0.17 -4.40 16.69 44.97 0.75 -3.65 16 28 F -0.16 -3.08 17.30 44.97 0.78 -2.30 16 29 F -0.16 -2.74 17.02 44.97 0.77 -1.98 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.37 18.95 7.79 -92.71 -0.72 18.23 16 32 H 0.02 0.88 7.82 -2.36 -0.02 0.86 16 33 H 0.08 2.17 6.36 -2.40 -0.02 2.15 16 34 H 0.06 1.80 8.17 -2.24 -0.02 1.78 16 35 H 0.08 1.06 8.15 -2.33 -0.02 1.04 16 36 H 0.10 1.19 8.15 -2.33 -0.02 1.17 16 37 H 0.08 1.07 8.17 -2.18 -0.02 1.05 16 38 H 0.06 1.25 5.22 -2.44 -0.01 1.24 16 39 H 0.09 1.43 8.15 -2.31 -0.02 1.41 16 40 H 0.07 1.24 8.15 -2.33 -0.02 1.22 16 41 H 0.05 1.73 8.16 -2.24 -0.02 1.72 16 42 H 0.09 2.38 6.38 -2.40 -0.02 2.36 16 Total: -1.00 -67.18 343.59 6.04 -61.14 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.37 Total: 21.14 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 3.39 Total: 9.81 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -2.75 Total: -108.61 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.05 Total: -19.00 kcal Atomic # 9 Polarization: -14.60 SS G_CDS: 3.06 Total: -11.54 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -67.18 6.04 -61.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039276814.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.197 kcal (2) G-P(sol) polarization free energy of solvation -67.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds