Wall clock time and date at job start Tue Mar 31 2020 20:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86792 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47218 * 89.99680 * 3 2 1 5 5 H 1.48500 * 109.47431 * 210.00169 * 3 2 1 6 6 H 1.48508 * 109.46998 * 330.00114 * 3 2 1 7 7 C 1.38810 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00301 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.47824 * 120.00407 * 179.97438 * 9 7 2 11 11 C 1.52115 * 108.05516 * 278.14001 * 10 9 7 12 12 C 1.52527 * 112.85703 * 193.06342 * 11 10 9 13 13 H 1.10187 * 109.59856 * 170.78938 * 12 11 10 14 14 C 1.52539 * 111.20715 * 292.11451 * 12 11 10 15 15 C 1.51907 * 112.98444 * 68.52973 * 14 12 11 16 16 C 1.51917 * 113.95607 * 46.15775 * 15 14 12 17 17 C 1.52549 * 112.93046 * 313.74757 * 16 15 14 18 18 H 1.10188 * 109.57978 * 170.29717 * 17 16 15 19 19 C 1.52109 * 108.05829 * 154.99750 * 10 9 7 20 20 N 1.47259 * 108.60353 * 51.14044 * 17 16 15 21 21 C 1.34588 * 122.44100 * 119.34642 * 20 17 16 22 22 O 1.21277 * 120.00090 * 174.37965 * 21 20 17 23 23 C 1.50701 * 119.99689 * 354.37178 * 21 20 17 24 24 H 1.09003 * 109.46941 * 344.00316 * 23 21 20 25 25 F 1.39893 * 109.47116 * 104.00642 * 23 21 20 26 26 C 1.52999 * 109.46775 * 224.00676 * 23 21 20 27 27 F 1.39896 * 109.47164 * 60.00477 * 26 23 21 28 28 F 1.39905 * 109.46699 * 180.02562 * 26 23 21 29 29 F 1.39893 * 109.47351 * 299.99801 * 26 23 21 30 30 H 0.97002 * 119.99614 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99698 * 359.97438 * 9 7 2 32 32 H 1.09013 * 106.46427 * 36.55839 * 10 9 7 33 33 H 1.09729 * 109.14424 * 314.63512 * 11 10 9 34 34 H 1.09771 * 109.07129 * 71.64967 * 11 10 9 35 35 H 1.09796 * 109.07565 * 190.13441 * 14 12 11 36 36 H 1.09798 * 109.04500 * 306.93223 * 14 12 11 37 37 H 1.10962 * 107.46610 * 165.10674 * 15 14 12 38 38 H 1.08668 * 111.06603 * 279.84030 * 15 14 12 39 39 H 1.09782 * 109.19393 * 192.23626 * 16 15 14 40 40 H 1.09788 * 109.16948 * 75.26088 * 16 15 14 41 41 H 1.09778 * 109.05400 * 288.25821 * 19 10 9 42 42 H 1.09732 * 109.14039 * 45.23364 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4476 2.6526 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0647 -3.6683 0.0005 11 6 2.4778 -3.9742 -1.4311 12 6 2.9651 -5.4080 -1.6137 13 1 3.0919 -5.6214 -2.6872 14 6 4.2862 -5.6385 -0.8868 15 6 4.1460 -5.5993 0.6252 16 6 2.9697 -6.4004 1.1567 17 6 1.6804 -6.1489 0.3812 18 1 0.9139 -6.8763 0.6933 19 6 1.1654 -4.7319 0.6118 20 7 1.9547 -6.3223 -1.0552 21 6 1.3273 -7.2486 -1.8034 22 8 1.5112 -7.2865 -3.0015 23 6 0.3964 -8.2387 -1.1522 24 1 0.5681 -8.2452 -0.0758 25 9 -0.9288 -7.8726 -1.4108 26 6 0.6596 -9.6352 -1.7191 27 9 1.9848 -10.0013 -1.4604 28 9 -0.2050 -10.5543 -1.1150 29 9 0.4393 -9.6269 -3.1005 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.9464 -3.5160 0.6232 33 1 1.6246 -3.7960 -2.0977 34 1 3.2765 -3.2829 -1.7295 35 1 4.6950 -6.6127 -1.1858 36 1 5.0070 -4.8727 -1.2023 37 1 5.0695 -6.0376 1.0568 38 1 4.1168 -4.5755 0.9884 39 1 2.8082 -6.1472 2.2126 40 1 3.2125 -7.4702 1.1118 41 1 1.0806 -4.5523 1.6914 42 1 0.1586 -4.6405 0.1850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039276815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:30 Heat of formation + Delta-G solvation = -215.189762 kcal Electronic energy + Delta-G solvation = -31867.572896 eV Core-core repulsion = 26961.440648 eV Total energy + Delta-G solvation = -4906.132248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.64830 -48.73812 -48.03604 -47.84700 -41.01560 -38.50652 -35.21995 -33.57353 -32.84209 -32.24365 -31.07628 -28.79885 -26.22050 -25.61056 -24.53217 -23.19752 -22.18519 -21.35422 -20.43866 -19.55674 -19.09082 -18.61167 -18.00043 -17.72407 -17.02006 -16.58805 -16.05459 -15.50827 -15.11747 -14.90914 -14.75533 -14.72082 -14.46328 -14.42936 -14.41751 -14.11944 -14.09197 -13.91735 -13.77615 -13.74225 -13.59809 -13.31647 -13.08072 -13.00124 -12.10322 -12.05053 -11.63865 -11.53325 -11.05362 -10.99140 -10.82028 -10.77244 -10.61951 -10.35065 -10.12733 -10.00674 -9.74183 -9.24412 -8.95447 -8.77181 -7.09930 -6.14196 -3.14888 1.66587 2.01113 2.44190 3.03345 3.37145 3.46904 3.48145 3.52676 3.59461 3.66776 4.03636 4.35158 4.44817 4.58015 4.62780 4.72249 4.87589 5.01038 5.03923 5.18154 5.29809 5.35259 5.45986 5.61426 5.66727 5.71809 5.78547 5.89626 5.94691 6.00245 6.04907 6.08958 6.25495 6.38110 6.38390 6.75109 6.92781 7.07996 7.59800 7.74020 8.70829 9.15497 10.02428 10.18056 11.34042 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.003327 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.270274 B = 8414.391684 C = 8876.151274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.331 4.331 8 H 0.064 0.936 9 N -0.742 5.742 10 C 0.184 3.816 11 C -0.137 4.137 12 C 0.145 3.855 13 H 0.097 0.903 14 C -0.120 4.120 15 C -0.118 4.118 16 C -0.122 4.122 17 C 0.135 3.865 18 H 0.085 0.915 19 C -0.130 4.130 20 N -0.579 5.579 21 C 0.501 3.499 22 O -0.503 6.503 23 C 0.033 3.967 24 H 0.146 0.854 25 F -0.152 7.152 26 C 0.448 3.552 27 F -0.167 7.167 28 F -0.169 7.169 29 F -0.154 7.154 30 H 0.255 0.745 31 H 0.364 0.636 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.408 -20.380 2.356 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.912 3.088 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.385 5.385 10 C 0.075 3.925 11 C -0.178 4.178 12 C 0.043 3.957 13 H 0.115 0.885 14 C -0.158 4.158 15 C -0.156 4.156 16 C -0.160 4.160 17 C 0.032 3.968 18 H 0.103 0.897 19 C -0.169 4.169 20 N -0.311 5.311 21 C 0.283 3.717 22 O -0.378 6.378 23 C -0.008 4.008 24 H 0.163 0.837 25 F -0.132 7.132 26 C 0.393 3.607 27 F -0.149 7.149 28 F -0.151 7.151 29 F -0.135 7.135 30 H 0.066 0.934 31 H 0.198 0.802 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.557 -18.720 1.679 19.599 hybrid contribution -0.308 -1.876 -0.032 1.901 sum 5.249 -20.596 1.647 21.318 Atomic orbital electron populations 1.70855 1.06085 1.28463 1.53478 1.25738 0.97033 1.00955 1.00457 0.83221 0.73910 0.75473 0.76220 1.22335 1.22165 1.21410 1.20025 0.91921 0.85709 1.48515 0.91767 1.42965 1.04651 1.00667 1.90253 1.20078 0.94329 0.85376 0.92735 1.22433 1.02187 0.92352 1.00815 1.21512 0.86129 0.89458 0.98582 0.88464 1.21604 0.96431 1.02425 0.95375 1.21203 0.97352 1.01894 0.95127 1.21643 0.94076 1.00450 0.99872 1.21618 0.97294 0.98469 0.79462 0.89704 1.21973 1.00335 0.92271 1.02330 1.48341 1.39506 1.33064 1.10196 1.19738 0.81903 0.82580 0.87481 1.90829 1.62250 1.71550 1.13144 1.22919 0.81509 0.91521 1.04879 0.83687 1.93032 1.32469 1.91951 1.95735 1.20304 0.75027 0.87667 0.77742 1.93241 1.35168 1.92612 1.93839 1.93250 1.69815 1.68830 1.83175 1.93311 1.94155 1.96639 1.29433 0.93359 0.80219 0.92186 0.91919 0.90777 0.92198 0.90351 0.92566 0.90223 0.90179 0.91920 0.90334 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.63 13.70 55.49 0.76 -27.87 16 2 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 3 Si 1.08 25.36 29.92 -169.99 -5.09 20.27 16 4 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.33 -8.83 9.83 -15.06 -0.15 -8.98 16 8 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 9 N -0.74 -17.42 5.08 -53.44 -0.27 -17.69 16 10 C 0.18 3.23 2.25 -68.11 -0.15 3.08 16 11 C -0.14 -2.31 4.90 -27.42 -0.13 -2.45 16 12 C 0.15 1.99 3.21 -67.99 -0.22 1.77 16 13 H 0.10 1.43 7.21 -51.25 -0.37 1.06 16 14 C -0.12 -1.34 5.45 -27.52 -0.15 -1.49 16 15 C -0.12 -1.21 4.95 -27.84 -0.14 -1.34 16 16 C -0.12 -1.10 5.45 -27.51 -0.15 -1.25 16 17 C 0.14 1.45 3.06 -67.99 -0.21 1.24 16 18 H 0.09 0.68 5.52 -51.25 -0.28 0.40 16 19 C -0.13 -1.83 4.91 -27.43 -0.13 -1.97 16 20 N -0.58 -7.40 2.51 -157.59 -0.40 -7.79 16 21 C 0.50 6.89 6.83 -11.07 -0.08 6.82 16 22 O -0.50 -8.62 15.14 5.56 0.08 -8.53 16 23 C 0.03 0.35 3.31 -27.88 -0.09 0.26 16 24 H 0.15 1.01 5.70 -51.93 -0.30 0.71 16 25 F -0.15 -1.89 17.03 2.25 0.04 -1.85 16 26 C 0.45 5.01 2.86 37.16 0.11 5.11 16 27 F -0.17 -1.81 17.02 2.25 0.04 -1.77 16 28 F -0.17 -1.74 17.30 2.25 0.04 -1.70 16 29 F -0.15 -2.10 15.94 2.25 0.04 -2.07 16 30 H 0.26 7.63 6.77 -40.82 -0.28 7.35 16 31 H 0.36 9.02 6.46 -40.82 -0.26 8.76 16 32 H 0.06 1.07 5.40 -51.92 -0.28 0.79 16 33 H 0.06 1.22 8.20 -51.51 -0.42 0.80 16 34 H 0.07 1.31 8.21 -51.49 -0.42 0.89 16 35 H 0.06 0.62 8.21 -51.48 -0.42 0.20 16 36 H 0.08 0.84 8.21 -51.48 -0.42 0.42 16 37 H 0.06 0.49 8.29 -50.80 -0.42 0.07 16 38 H 0.08 0.93 5.66 -52.12 -0.29 0.64 16 39 H 0.08 0.63 8.21 -51.48 -0.42 0.21 16 40 H 0.06 0.48 8.21 -51.48 -0.42 0.05 16 41 H 0.08 1.05 8.21 -51.49 -0.42 0.63 16 42 H 0.06 1.00 8.01 -51.51 -0.41 0.59 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -32.21 341.76 -6.26 -38.47 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.06 Total: 5.90 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.59 Total: -0.52 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.09 Total: -53.35 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.08 Total: -8.53 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.15 Total: -7.39 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.09 Total: 20.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.21 -6.26 -38.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039276815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.719 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds