Wall clock time and date at job start Tue Mar 31 2020 20:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86792 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47218 * 89.99680 * 3 2 1 5 5 H 1.48500 * 109.47431 * 210.00169 * 3 2 1 6 6 H 1.48508 * 109.46998 * 330.00114 * 3 2 1 7 7 C 1.38810 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00301 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00126 * 0.02562 * 7 2 1 10 10 C 1.47824 * 120.00407 * 179.97438 * 9 7 2 11 11 C 1.52115 * 108.05516 * 278.14001 * 10 9 7 12 12 C 1.52527 * 112.85703 * 193.06342 * 11 10 9 13 13 H 1.10187 * 109.59856 * 170.78938 * 12 11 10 14 14 C 1.52539 * 111.20715 * 292.11451 * 12 11 10 15 15 C 1.51907 * 112.98444 * 68.52973 * 14 12 11 16 16 C 1.51917 * 113.95607 * 46.15775 * 15 14 12 17 17 C 1.52549 * 112.93046 * 313.74757 * 16 15 14 18 18 H 1.10188 * 109.57978 * 170.29717 * 17 16 15 19 19 C 1.52109 * 108.05829 * 154.99750 * 10 9 7 20 20 N 1.47259 * 108.60353 * 51.14044 * 17 16 15 21 21 C 1.34588 * 122.44100 * 119.34642 * 20 17 16 22 22 O 1.21277 * 120.00090 * 174.37965 * 21 20 17 23 23 C 1.50701 * 119.99689 * 354.37178 * 21 20 17 24 24 H 1.09003 * 109.46941 * 344.00316 * 23 21 20 25 25 F 1.39893 * 109.47116 * 104.00642 * 23 21 20 26 26 C 1.52999 * 109.46775 * 224.00676 * 23 21 20 27 27 F 1.39896 * 109.47164 * 60.00477 * 26 23 21 28 28 F 1.39905 * 109.46699 * 180.02562 * 26 23 21 29 29 F 1.39893 * 109.47351 * 299.99801 * 26 23 21 30 30 H 0.97002 * 119.99614 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99698 * 359.97438 * 9 7 2 32 32 H 1.09013 * 106.46427 * 36.55839 * 10 9 7 33 33 H 1.09729 * 109.14424 * 314.63512 * 11 10 9 34 34 H 1.09771 * 109.07129 * 71.64967 * 11 10 9 35 35 H 1.09796 * 109.07565 * 190.13441 * 14 12 11 36 36 H 1.09798 * 109.04500 * 306.93223 * 14 12 11 37 37 H 1.10962 * 107.46610 * 165.10674 * 15 14 12 38 38 H 1.08668 * 111.06603 * 279.84030 * 15 14 12 39 39 H 1.09782 * 109.19393 * 192.23626 * 16 15 14 40 40 H 1.09788 * 109.16948 * 75.26088 * 16 15 14 41 41 H 1.09778 * 109.05400 * 288.25821 * 19 10 9 42 42 H 1.09732 * 109.14039 * 45.23364 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4476 2.6526 -0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0647 -3.6683 0.0005 11 6 2.4778 -3.9742 -1.4311 12 6 2.9651 -5.4080 -1.6137 13 1 3.0919 -5.6214 -2.6872 14 6 4.2862 -5.6385 -0.8868 15 6 4.1460 -5.5993 0.6252 16 6 2.9697 -6.4004 1.1567 17 6 1.6804 -6.1489 0.3812 18 1 0.9139 -6.8763 0.6933 19 6 1.1654 -4.7319 0.6118 20 7 1.9547 -6.3223 -1.0552 21 6 1.3273 -7.2486 -1.8034 22 8 1.5112 -7.2865 -3.0015 23 6 0.3964 -8.2387 -1.1522 24 1 0.5681 -8.2452 -0.0758 25 9 -0.9288 -7.8726 -1.4108 26 6 0.6596 -9.6352 -1.7191 27 9 1.9848 -10.0013 -1.4604 28 9 -0.2050 -10.5543 -1.1150 29 9 0.4393 -9.6269 -3.1005 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 2.9464 -3.5160 0.6232 33 1 1.6246 -3.7960 -2.0977 34 1 3.2765 -3.2829 -1.7295 35 1 4.6950 -6.6127 -1.1858 36 1 5.0070 -4.8727 -1.2023 37 1 5.0695 -6.0376 1.0568 38 1 4.1168 -4.5755 0.9884 39 1 2.8082 -6.1472 2.2126 40 1 3.2125 -7.4702 1.1118 41 1 1.0806 -4.5523 1.6914 42 1 0.1586 -4.6405 0.1850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039276815.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:29 Heat of formation + Delta-G solvation = -235.193960 kcal Electronic energy + Delta-G solvation = -31868.440344 eV Core-core repulsion = 26961.440648 eV Total energy + Delta-G solvation = -4906.999695 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.52230 -49.64791 -48.89561 -48.76192 -42.09085 -39.66231 -36.90752 -34.61158 -33.94478 -33.81419 -32.05159 -30.45479 -27.29317 -26.85657 -25.67279 -24.92206 -23.22360 -22.33653 -21.70689 -20.47843 -19.96686 -19.59143 -19.51843 -18.86617 -18.26106 -17.63954 -17.11281 -16.87115 -16.19792 -16.06947 -15.79111 -15.65850 -15.64773 -15.59425 -15.38381 -15.28417 -15.01151 -15.00202 -14.91060 -14.77807 -14.74935 -14.65142 -14.33035 -14.04826 -13.48032 -13.02168 -12.81312 -12.66369 -12.57317 -12.50379 -12.04081 -12.02567 -11.90531 -11.73900 -11.57392 -11.31600 -11.06513 -10.96485 -10.76661 -9.87806 -9.11031 -8.36063 -5.29950 0.71164 0.99549 1.47419 1.58166 1.68593 1.81841 2.16858 2.47704 2.59610 2.71573 2.76495 3.18649 3.42045 3.43572 3.54388 3.59769 3.78286 3.87696 3.91974 3.98854 4.16178 4.19691 4.30555 4.36934 4.51774 4.59125 4.81686 4.82084 4.93193 4.96227 5.01466 5.10496 5.13371 5.27277 5.33504 5.43206 5.59319 5.64198 6.04576 6.51390 6.54229 7.10376 8.00487 8.13332 9.15889 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.020252 B = 0.003327 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.270274 B = 8414.391684 C = 8876.151274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.107 4.107 3 Si 1.126 2.874 4 H -0.283 1.283 5 H -0.273 1.273 6 H -0.299 1.299 7 C -0.320 4.320 8 H 0.069 0.931 9 N -0.757 5.757 10 C 0.183 3.817 11 C -0.124 4.124 12 C 0.151 3.849 13 H 0.082 0.918 14 C -0.115 4.115 15 C -0.122 4.122 16 C -0.122 4.122 17 C 0.134 3.866 18 H 0.125 0.875 19 C -0.126 4.126 20 N -0.576 5.576 21 C 0.494 3.506 22 O -0.545 6.545 23 C 0.038 3.962 24 H 0.194 0.806 25 F -0.161 7.161 26 C 0.450 3.550 27 F -0.163 7.163 28 F -0.161 7.161 29 F -0.174 7.174 30 H 0.243 0.757 31 H 0.354 0.646 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -22.421 4.390 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.298 4.298 3 Si 0.951 3.049 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.226 1.226 7 C -0.452 4.452 8 H 0.086 0.914 9 N -0.400 5.400 10 C 0.076 3.924 11 C -0.165 4.165 12 C 0.048 3.952 13 H 0.100 0.900 14 C -0.153 4.153 15 C -0.159 4.159 16 C -0.160 4.160 17 C 0.032 3.968 18 H 0.142 0.858 19 C -0.164 4.164 20 N -0.308 5.308 21 C 0.278 3.722 22 O -0.423 6.423 23 C -0.002 4.002 24 H 0.210 0.790 25 F -0.141 7.141 26 C 0.395 3.605 27 F -0.144 7.144 28 F -0.143 7.143 29 F -0.155 7.155 30 H 0.053 0.947 31 H 0.186 0.814 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.126 -20.817 3.741 22.319 hybrid contribution -0.749 -1.292 -0.704 1.650 sum 6.377 -22.109 3.038 23.210 Atomic orbital electron populations 1.70969 1.07309 1.27793 1.56832 1.27070 0.97072 1.04571 1.01121 0.82638 0.73546 0.71828 0.76863 1.20973 1.19867 1.22574 1.20367 0.92272 0.86907 1.45638 0.91353 1.43268 1.04424 1.02061 1.90206 1.20354 0.94632 0.84287 0.93100 1.22230 1.00072 0.94741 0.99475 1.21319 0.87951 0.87372 0.98605 0.89999 1.21571 0.94344 1.03265 0.96141 1.21214 0.99407 1.01307 0.94013 1.21697 0.91984 1.01988 1.00291 1.21874 0.99748 0.96861 0.78314 0.85793 1.21901 0.98564 0.93458 1.02499 1.48420 1.38820 1.32379 1.11141 1.20256 0.81811 0.83002 0.87099 1.90813 1.63585 1.72797 1.15083 1.23064 0.80056 0.90046 1.07037 0.78954 1.93018 1.33147 1.91998 1.95976 1.20318 0.75280 0.88022 0.76911 1.93250 1.34859 1.92601 1.93695 1.93269 1.69591 1.68543 1.82861 1.93276 1.94303 1.96750 1.31161 0.94689 0.81448 0.91715 0.95692 0.92409 0.90617 0.90405 0.90098 0.92190 0.88164 0.89025 0.89062 0.93404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.20 13.70 21.65 0.30 -60.90 16 2 C -0.11 -6.14 5.50 84.86 0.47 -5.67 16 3 Si 1.13 51.42 29.92 68.60 2.05 53.47 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 7 C -0.32 -17.31 9.83 84.03 0.83 -16.49 16 8 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 9 N -0.76 -36.38 5.08 -323.00 -1.64 -38.02 16 10 C 0.18 6.43 2.25 44.15 0.10 6.53 16 11 C -0.12 -4.32 4.90 30.15 0.15 -4.17 16 12 C 0.15 4.05 3.21 44.54 0.14 4.20 16 13 H 0.08 2.47 7.21 -1.75 -0.01 2.46 16 14 C -0.12 -2.31 5.45 30.08 0.16 -2.15 16 15 C -0.12 -2.05 4.95 29.88 0.15 -1.91 16 16 C -0.12 -1.59 5.45 30.09 0.16 -1.43 16 17 C 0.13 2.40 3.06 44.54 0.14 2.53 16 18 H 0.12 1.31 5.52 -1.75 -0.01 1.30 16 19 C -0.13 -3.33 4.91 30.14 0.15 -3.18 16 20 N -0.58 -13.63 2.51 -771.01 -1.94 -15.57 16 21 C 0.49 12.86 6.83 87.69 0.60 13.46 16 22 O -0.55 -18.70 15.14 -3.02 -0.05 -18.75 16 23 C 0.04 0.72 3.31 29.85 0.10 0.82 16 24 H 0.19 1.66 5.70 -2.39 -0.01 1.64 16 25 F -0.16 -3.71 17.03 44.97 0.77 -2.94 16 26 C 0.45 9.03 2.86 71.98 0.21 9.24 16 27 F -0.16 -3.06 17.02 44.97 0.77 -2.29 16 28 F -0.16 -2.88 17.30 44.97 0.78 -2.10 16 29 F -0.17 -4.61 15.94 44.97 0.72 -3.89 16 30 H 0.24 15.13 6.77 -92.71 -0.63 14.51 16 31 H 0.35 18.23 6.46 -92.70 -0.60 17.64 16 32 H 0.07 2.26 5.40 -2.38 -0.01 2.25 16 33 H 0.02 1.02 8.20 -2.00 -0.02 1.00 16 34 H 0.06 2.14 8.21 -1.98 -0.02 2.12 16 35 H 0.08 1.33 8.21 -1.96 -0.02 1.32 16 36 H 0.08 1.56 8.21 -1.96 -0.02 1.55 16 37 H 0.08 1.03 8.29 -1.33 -0.01 1.02 16 38 H 0.06 1.25 5.66 -2.56 -0.01 1.24 16 39 H 0.10 1.01 8.21 -1.97 -0.02 1.00 16 40 H 0.09 0.79 8.21 -1.97 -0.02 0.77 16 41 H 0.09 2.22 8.21 -1.97 -0.02 2.20 16 42 H 0.05 1.44 8.01 -2.00 -0.02 1.43 16 Total: -1.00 -73.57 341.76 5.77 -67.81 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.67 Total: 21.41 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 3.35 Total: 1.78 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -3.28 Total: -114.49 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 9 Polarization: -14.25 SS G_CDS: 3.03 Total: -11.23 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.47 kcal Total: -73.57 5.77 -67.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039276815.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.388 kcal (2) G-P(sol) polarization free energy of solvation -73.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds